RNA–Protein interactions for RNA: ENST00000367255.9

SYNE1-207, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SYNE1, Length 27,748 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-207ENST00000367255 XKP51811 444 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 TMEM62Q0P6H9 643 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 TBC1D15Q8TC07 691 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 DDX50Q9BQ39 737 aaKnown RBP3.87□□□□□ -1.79
SYNE1-207ENST00000367255 RGS17Q9UGC6 210 aaPredicted RBP3.87□□□□□ -1.79
SYNE1-207ENST00000367255 CFAP65Q6ZU64 1925 aaKnown RBP3.87□□□□□ -1.79
SYNE1-207ENST00000367255 TOM1O60784 492 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 PHC1P78364 1004 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 CCNG2Q16589 344 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 C2CD6Q53TS8 623 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 IARS2Q9NSE4 1012 aaKnown RBP3.87□□□□□ -1.79
SYNE1-207ENST00000367255 PCDHGB1Q9Y5G3 927 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 STMND1H3BQB6 276 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 AP5Z1O43299 807 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 MMP1P03956 469 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 GNA12Q03113 381 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 SLC26A11Q86WA9 606 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 NIM1KQ8IY84 436 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 TAGAPQ8N103 731 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 ZNF555Q8NEP9 628 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 DDX52Q9Y2R4 599 aaKnown RBP eCLIP3.87□□□□□ -1.79
SYNE1-207ENST00000367255 CAB39Q9Y376 341 aaPredicted RBP3.87□□□□□ -1.79
SYNE1-207ENST00000367255 PCDHB12Q9Y5F1 795 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 ARHGEF33A8MVX0 844 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 ZNF185O15231 689 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 COL6A2P12110 1019 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 EIF2DP41214 584 aaKnown RBP3.87□□□□□ -1.79
SYNE1-207ENST00000367255 ADCY7P51828 1080 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 FBXL13Q8NEE6 735 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 RAD54LQ92698 747 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 TESCQ96BS2 214 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 SLC41A3Q96GZ6 507 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 RASSF1Q9NS23 344 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 PPP1R14DQ9NXH3 145 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 CDC42BPGQ6DT37 1551 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 NPM3O75607 178 aaKnown RBP3.87□□□□□ -1.79
SYNE1-207ENST00000367255 RAG1P15918 1043 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 KCNK10P57789 538 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 CDC73Q6P1J9 531 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 KYQ8NBH2 561 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 GLB1L3Q8NCI6 653 aaPredicted RBP3.87□□□□□ -1.79
SYNE1-207ENST00000367255 SCGB3A2Q96PL1 93 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 TWNKQ96RR1 684 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 ELAC2Q9BQ52 826 aaKnown RBP3.87□□□□□ -1.79
SYNE1-207ENST00000367255 TFCP2L1Q9NZI6 479 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 FAM153AQ9UHL3 310 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 TAGLN3Q9UI15 199 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 GJA3Q9Y6H8 435 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 TRIM49P0CI25 452 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 TRIM49CP0CI26 452 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 PLEKHA7Q6IQ23 1121 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 C2CD5Q86YS7 1000 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 PTCD3Q96EY7 689 aaKnown RBP3.87□□□□□ -1.79
SYNE1-207ENST00000367255 ZBTB3Q9H5J0 574 aa3.87□□□□□ -1.79
SYNE1-207ENST00000367255 KCNA2P16389 499 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 CYP2C18P33260 490 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 RAB2AP61019 212 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 GPC5P78333 572 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 SLC13A2Q13183 592 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 FASTKD1Q53R41 847 aaKnown RBP3.86□□□□□ -1.79
SYNE1-207ENST00000367255 PPP1R15BQ5SWA1 713 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 TATDN2Q93075 761 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 ZNF275Q9NSD4 429 aaPredicted RBP3.86□□□□□ -1.79
SYNE1-207ENST00000367255 PI4KAP2A4QPH2 592 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 TPD52L2O43399 206 aaKnown RBP3.86□□□□□ -1.79
SYNE1-207ENST00000367255 ENTPD5O75356 428 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 AFPP02771 609 aaKnown RBP3.86□□□□□ -1.79
SYNE1-207ENST00000367255 MYBP10242 640 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 ACLYP53396 1101 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 SMARCB1Q12824 385 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 TFDP1Q14186 410 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 PCK2Q16822 640 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 FUKQ8N0W3 1084 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 CNTD1Q8N815 330 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 PI4KAP1Q8N8J0 262 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 GMCL1Q96IK5 515 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 PRDM8Q9NQV8 689 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 TMEM39AQ9NV64 488 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 DNMT1P26358 1616 aaKnown RBP3.86□□□□□ -1.79
SYNE1-207ENST00000367255 CHST10O43529 356 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 LRIF1Q5T3J3 769 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 KBTBD2Q8IY47 623 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 DPH5Q9H2P9 285 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 NLRC4Q9NPP4 1024 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 MN1Q10571 1320 aaPredicted RBP3.86□□□□□ -1.79
SYNE1-207ENST00000367255 KLF18A0A0U1RQI7 1052 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 RNF103-CHMP3A0A140T963 221 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 CACNB4O00305 520 aaPredicted RBP3.86□□□□□ -1.79
SYNE1-207ENST00000367255 PABPC4LP0CB38 370 aaKnown RBP3.86□□□□□ -1.79
SYNE1-207ENST00000367255 NDUFA9Q16795 377 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 PARD3BQ8TEW8 1205 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 MYO19Q96H55 970 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 CLK4Q9HAZ1 481 aaKnown RBP3.86□□□□□ -1.79
SYNE1-207ENST00000367255 WWP2O00308 870 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 CD40LGP29965 261 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 MAGEA10P43363 369 aaPredicted RBP3.86□□□□□ -1.79
SYNE1-207ENST00000367255 PLEKHO2Q8TD55 490 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 ATG4AQ8WYN0 398 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 P2RX5Q93086 422 aa3.86□□□□□ -1.79
SYNE1-207ENST00000367255 IRX2Q9BZI1 471 aaPredicted RBP3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms