RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 LMNAP02545 664 aaKnown RBP12.58□□□□□ -0.39
CLIP3-201ENST00000360535 VTNP04004 478 aa12.58□□□□□ -0.39
CLIP3-201ENST00000360535 SKIP12755 728 aa12.58□□□□□ -0.39
CLIP3-201ENST00000360535 GPD2P43304 727 aa12.58□□□□□ -0.39
CLIP3-201ENST00000360535 MRPS5P82675 430 aaKnown RBP12.58□□□□□ -0.39
CLIP3-201ENST00000360535 SLC25A3Q00325 362 aa12.58□□□□□ -0.39
CLIP3-201ENST00000360535 GBE1Q04446 702 aa12.58□□□□□ -0.39
CLIP3-201ENST00000360535 KCNJ11Q14654 390 aa12.58□□□□□ -0.39
CLIP3-201ENST00000360535 LGSNQ5TDP6 509 aa12.58□□□□□ -0.39
CLIP3-201ENST00000360535 UNC5AQ6ZN44 842 aa12.58□□□□□ -0.39
CLIP3-201ENST00000360535 TEKT4Q8WW24 435 aa12.58□□□□□ -0.39
CLIP3-201ENST00000360535 ETNK2Q9NVF9 386 aa12.58□□□□□ -0.39
CLIP3-201ENST00000360535 SPECC1L-ADORA2AF8WAN1 911 aa12.58□□□□□ -0.4
CLIP3-201ENST00000360535 HCRTO43612 131 aa12.58□□□□□ -0.4
CLIP3-201ENST00000360535 CDH5P33151 784 aaPredicted RBP12.58□□□□□ -0.4
CLIP3-201ENST00000360535 CCNG1P51959 295 aa12.58□□□□□ -0.4
CLIP3-201ENST00000360535 ENPEPQ07075 957 aa12.58□□□□□ -0.4
CLIP3-201ENST00000360535 GOLGA7BQ2TAP0 167 aa12.58□□□□□ -0.4
CLIP3-201ENST00000360535 DENND5BQ6ZUT9 1274 aa12.58□□□□□ -0.4
CLIP3-201ENST00000360535 CAND1Q86VP6 1230 aaKnown RBP12.58□□□□□ -0.4
CLIP3-201ENST00000360535 MAP7D3Q8IWC1 876 aa12.58□□□□□ -0.4
CLIP3-201ENST00000360535 CNPY3Q9BT09 278 aa12.58□□□□□ -0.4
CLIP3-201ENST00000360535 PAK5Q9P286 719 aa12.58□□□□□ -0.4
CLIP3-201ENST00000360535 WDR35Q9P2L0 1181 aa12.58□□□□□ -0.4
CLIP3-201ENST00000360535 PLLPQ9Y342 182 aa12.58□□□□□ -0.4
CLIP3-201ENST00000360535 MFHAS1Q9Y4C4 1052 aa12.58□□□□□ -0.4
CLIP3-201ENST00000360535 A0A087WZ62 844 aa12.58□□□□□ -0.4
CLIP3-201ENST00000360535 ZMPSTE24O75844 475 aa12.58□□□□□ -0.4
CLIP3-201ENST00000360535 GNAT1P11488 350 aa12.58□□□□□ -0.4
CLIP3-201ENST00000360535 ABCG1P45844 678 aa12.58□□□□□ -0.4
CLIP3-201ENST00000360535 ZNF143P52747 638 aaPredicted RBP12.58□□□□□ -0.4
CLIP3-201ENST00000360535 PPP2R5DQ14738 602 aa12.58□□□□□ -0.4
CLIP3-201ENST00000360535 SCUBE1Q8IWY4 988 aa12.58□□□□□ -0.4
CLIP3-201ENST00000360535 PCDH19Q8TAB3 1148 aa12.58□□□□□ -0.4
CLIP3-201ENST00000360535 ZNF398Q8TD17 642 aa12.58□□□□□ -0.4
CLIP3-201ENST00000360535 FDXACB1Q9BRP7 624 aaPredicted RBP12.58□□□□□ -0.4
CLIP3-201ENST00000360535 SNRNP25Q9BV90 132 aaKnown RBP12.58□□□□□ -0.4
CLIP3-201ENST00000360535 USP29Q9HBJ7 922 aa12.58□□□□□ -0.4
CLIP3-201ENST00000360535 SSU72Q9NP77 194 aaKnown RBP12.58□□□□□ -0.4
CLIP3-201ENST00000360535 SPATS2LQ9NUQ6 558 aaKnown RBP12.58□□□□□ -0.4
CLIP3-201ENST00000360535 A6NHS1 94 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 PDE5AO76074 875 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 SORBS2O94875 1100 aaKnown RBP12.57□□□□□ -0.4
CLIP3-201ENST00000360535 RARBP10826 455 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 NCF2P19878 526 aaPredicted RBP12.57□□□□□ -0.4
CLIP3-201ENST00000360535 GTF2A2P52657 109 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 MRPS35P82673 323 aaKnown RBP12.57□□□□□ -0.4
CLIP3-201ENST00000360535 SLC18A2Q05940 514 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 STX3Q13277 289 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 MXD4Q14582 209 aaPredicted RBP12.57□□□□□ -0.4
CLIP3-201ENST00000360535 SURF1Q15526 300 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 C6orf163Q5TEZ5 329 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 ATG16L1Q676U5 607 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 RIPOR1Q6ZS17 1223 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 KBTBD2Q8IY47 623 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 HACE1Q8IYU2 909 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 CLEC4CQ8WTT0 213 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 CLMNQ96JQ2 1002 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 PHACTR1Q9C0D0 580 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 SCOCQ9UIL1 159 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 WDR27A2RRH5 827 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 ACKR2O00590 384 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 KRT38O76015 456 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 ZBTB7AO95365 584 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 PDGFRBP09619 1106 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 C6orf222P0C671 652 aaPredicted RBP12.57□□□□□ -0.4
CLIP3-201ENST00000360535 LCP1P13796 627 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 CYP3A5P20815 502 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 ADORA2AP29274 412 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 SDC4P31431 198 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 TMEM62Q0P6H9 643 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 ZRSR2Q15696 482 aaKnown RBP12.57□□□□□ -0.4
CLIP3-201ENST00000360535 HSF5Q4G112 596 aaPredicted RBP12.57□□□□□ -0.4
CLIP3-201ENST00000360535 CDCA2Q69YH5 1023 aaPredicted RBP12.57□□□□□ -0.4
CLIP3-201ENST00000360535 PMF1Q6P1K2 205 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 PYDC1Q8WXC3 89 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 TUBB6Q9BUF5 446 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 LHX5Q9H2C1 402 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 POPDC2Q9HBU9 364 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 EFR3BQ9Y2G0 817 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 SNX9Q9Y5X1 595 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 DNAH12Q6ZR08 3092 aa12.57□□□□□ -0.4
CLIP3-201ENST00000360535 CCDC78A2IDD5 438 aa12.56□□□□□ -0.4
CLIP3-201ENST00000360535 ITM2AO43736 263 aa12.56□□□□□ -0.4
CLIP3-201ENST00000360535 CILPO75339 1184 aa12.56□□□□□ -0.4
CLIP3-201ENST00000360535 RFPL1O75677 317 aa12.56□□□□□ -0.4
CLIP3-201ENST00000360535 APOEP02649 317 aa12.56□□□□□ -0.4
CLIP3-201ENST00000360535 DHRS4L1P0CG22 281 aa12.56□□□□□ -0.4
CLIP3-201ENST00000360535 ACADSP16219 412 aa12.56□□□□□ -0.4
CLIP3-201ENST00000360535 SP100P23497 879 aaPredicted RBP12.56□□□□□ -0.4
CLIP3-201ENST00000360535 SARNPP82979 210 aaKnown RBP12.56□□□□□ -0.4
CLIP3-201ENST00000360535 PDE1BQ01064 536 aa12.56□□□□□ -0.4
CLIP3-201ENST00000360535 CCDC14Q49A88 953 aa12.56□□□□□ -0.4
CLIP3-201ENST00000360535 GLRA4Q5JXX5 417 aa12.56□□□□□ -0.4
CLIP3-201ENST00000360535 VWA5B1Q5TIE3 1220 aa12.56□□□□□ -0.4
CLIP3-201ENST00000360535 IZUMO2Q6UXV1 221 aa12.56□□□□□ -0.4
CLIP3-201ENST00000360535 CCNJLQ8IV13 435 aa12.56□□□□□ -0.4
CLIP3-201ENST00000360535 ARHGAP24Q8N264 748 aa12.56□□□□□ -0.4
CLIP3-201ENST00000360535 PHC3Q8NDX5 983 aa12.56□□□□□ -0.4
CLIP3-201ENST00000360535 GSTCDQ8NEC7 633 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms