RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 NDRG1Q92597 394 aaKnown RBP16.04■□□□□ 0.16
UPF3B-202ENST00000345865 KLHL29Q96CT2 875 aa16.04■□□□□ 0.16
UPF3B-202ENST00000345865 CFAP36Q96G28 342 aa16.04■□□□□ 0.16
UPF3B-202ENST00000345865 TRIM6Q9C030 488 aaPredicted RBP16.04■□□□□ 0.16
UPF3B-202ENST00000345865 DHX35Q9H5Z1 703 aaKnown RBP16.04■□□□□ 0.16
UPF3B-202ENST00000345865 POPDC2Q9HBU9 364 aa16.04■□□□□ 0.16
UPF3B-202ENST00000345865 ALG13Q9NP73 1137 aaKnown RBP16.04■□□□□ 0.16
UPF3B-202ENST00000345865 TTLL3Q9Y4R7 772 aa16.04■□□□□ 0.16
UPF3B-202ENST00000345865 ZNF638Q14966 1978 aaKnown RBP16.04■□□□□ 0.16
UPF3B-202ENST00000345865 NRCAMQ92823 1304 aa16.04■□□□□ 0.16
UPF3B-202ENST00000345865 KPNA7A9QM74 516 aa16.03■□□□□ 0.16
UPF3B-202ENST00000345865 KRT16P08779 473 aa16.03■□□□□ 0.16
UPF3B-202ENST00000345865 IGFBP6P24592 240 aaPredicted RBP16.03■□□□□ 0.16
UPF3B-202ENST00000345865 TKTP29401 623 aaKnown RBP16.03■□□□□ 0.16
UPF3B-202ENST00000345865 GNL1P36915 607 aaPredicted RBP16.03■□□□□ 0.16
UPF3B-202ENST00000345865 RPL34P49207 117 aaKnown RBP16.03■□□□□ 0.16
UPF3B-202ENST00000345865 CCDC15Q0P6D6 951 aa16.03■□□□□ 0.16
UPF3B-202ENST00000345865 BST2Q10589 180 aaKnown RBP16.03■□□□□ 0.16
UPF3B-202ENST00000345865 PLEKHG4Q58EX7 1191 aa16.03■□□□□ 0.16
UPF3B-202ENST00000345865 ZDHHC17Q8IUH5 632 aa16.03■□□□□ 0.16
UPF3B-202ENST00000345865 PYROXD2Q8N2H3 581 aa16.03■□□□□ 0.16
UPF3B-202ENST00000345865 UPF1Q92900 1129 aaKnown RBP eCLIP16.03■□□□□ 0.16
UPF3B-202ENST00000345865 ARHGEF3Q9NR81 526 aa16.03■□□□□ 0.16
UPF3B-202ENST00000345865 UBQLN1Q9UMX0 589 aaKnown RBP16.03■□□□□ 0.16
UPF3B-202ENST00000345865 GNEQ9Y223 722 aaKnown RBP16.03■□□□□ 0.16
UPF3B-202ENST00000345865 PIN4Q9Y237 131 aaKnown RBP16.03■□□□□ 0.16
UPF3B-202ENST00000345865 SMIM35A0A1B0GVV1 85 aa16.03■□□□□ 0.16
UPF3B-202ENST00000345865 CCNB1P14635 433 aa16.03■□□□□ 0.16
UPF3B-202ENST00000345865 ATP2A2P16615 1042 aaKnown RBP16.03■□□□□ 0.16
UPF3B-202ENST00000345865 ADAM17P78536 824 aa16.03■□□□□ 0.16
UPF3B-202ENST00000345865 UBXN11Q5T124 520 aa16.03■□□□□ 0.16
UPF3B-202ENST00000345865 ZNF534Q76KX8 674 aa16.03■□□□□ 0.16
UPF3B-202ENST00000345865 VSIG1Q86XK7 387 aa16.03■□□□□ 0.16
UPF3B-202ENST00000345865 ARRDC4Q8NCT1 418 aa16.03■□□□□ 0.16
UPF3B-202ENST00000345865 SLC2A14Q8TDB8 520 aa16.03■□□□□ 0.16
UPF3B-202ENST00000345865 ERP27Q96DN0 273 aa16.03■□□□□ 0.16
UPF3B-202ENST00000345865 KCTD15Q96SI1 283 aaPredicted RBP16.03■□□□□ 0.16
UPF3B-202ENST00000345865 NOD2Q9HC29 1040 aa16.03■□□□□ 0.16
UPF3B-202ENST00000345865 SMYD2Q9NRG4 433 aa16.03■□□□□ 0.16
UPF3B-202ENST00000345865 CLEC11AQ9Y240 323 aa16.03■□□□□ 0.16
UPF3B-202ENST00000345865 NUMBLQ9Y6R0 609 aa16.03■□□□□ 0.16
UPF3B-202ENST00000345865 MYO18AQ92614 2054 aaKnown RBP16.03■□□□□ 0.16
UPF3B-202ENST00000345865 BRCA2P51587 3418 aa16.03■□□□□ 0.16
UPF3B-202ENST00000345865 CFAP69A5D8W1 941 aa16.02■□□□□ 0.16
UPF3B-202ENST00000345865 TREHO43280 583 aa16.02■□□□□ 0.16
UPF3B-202ENST00000345865 ETV4P43268 484 aa16.02■□□□□ 0.16
UPF3B-202ENST00000345865 MAGEA6P43360 314 aa16.02■□□□□ 0.16
UPF3B-202ENST00000345865 BCAT1P54687 386 aa16.02■□□□□ 0.16
UPF3B-202ENST00000345865 SNX17Q15036 470 aa16.02■□□□□ 0.16
UPF3B-202ENST00000345865 OLFML2BQ68BL8 750 aa16.02■□□□□ 0.16
UPF3B-202ENST00000345865 CSPG4P5Q96PW8 444 aa16.02■□□□□ 0.16
UPF3B-202ENST00000345865 PNPLA8Q9NP80 782 aa16.02■□□□□ 0.16
UPF3B-202ENST00000345865 FLRT1Q9NZU1 646 aa16.02■□□□□ 0.16
UPF3B-202ENST00000345865 BAIAP2L1Q9UHR4 511 aa16.02■□□□□ 0.16
UPF3B-202ENST00000345865 AP4E1Q9UPM8 1137 aa16.02■□□□□ 0.16
UPF3B-202ENST00000345865 USH1CQ9Y6N9 552 aa16.02■□□□□ 0.16
UPF3B-202ENST00000345865 A8MUI8 341 aa16.02■□□□□ 0.15
UPF3B-202ENST00000345865 TM9SF1O15321 606 aa16.02■□□□□ 0.15
UPF3B-202ENST00000345865 UNC5CO95185 931 aa16.02■□□□□ 0.15
UPF3B-202ENST00000345865 MT-ND3P03897 115 aa16.02■□□□□ 0.15
UPF3B-202ENST00000345865 INHBAP08476 426 aa16.02■□□□□ 0.15
UPF3B-202ENST00000345865 PYGBP11216 843 aa16.02■□□□□ 0.15
UPF3B-202ENST00000345865 GBP2P32456 591 aaPredicted RBP16.02■□□□□ 0.15
UPF3B-202ENST00000345865 GRIA1P42261 906 aa16.02■□□□□ 0.15
UPF3B-202ENST00000345865 NEK3P51956 506 aa16.02■□□□□ 0.15
UPF3B-202ENST00000345865 FAM110CQ1W6H9 321 aa16.02■□□□□ 0.15
UPF3B-202ENST00000345865 MPP5Q8N3R9 675 aa16.02■□□□□ 0.15
UPF3B-202ENST00000345865 NETO2Q8NC67 525 aa16.02■□□□□ 0.15
UPF3B-202ENST00000345865 KLC2Q9H0B6 622 aa16.02■□□□□ 0.15
UPF3B-202ENST00000345865 SLC15A5A6NIM6 579 aa16.01■□□□□ 0.15
UPF3B-202ENST00000345865 UGT1A9O60656 530 aa16.01■□□□□ 0.15
UPF3B-202ENST00000345865 DHRS4L1P0CG22 281 aa16.01■□□□□ 0.15
UPF3B-202ENST00000345865 AMPD1P23109 780 aa16.01■□□□□ 0.15
UPF3B-202ENST00000345865 GTF2A1P52655 376 aaPredicted RBP16.01■□□□□ 0.15
UPF3B-202ENST00000345865 PITX1P78337 314 aaPredicted RBP16.01■□□□□ 0.15
UPF3B-202ENST00000345865 SLC18A2Q05940 514 aa16.01■□□□□ 0.15
UPF3B-202ENST00000345865 OVGP1Q12889 678 aa16.01■□□□□ 0.15
UPF3B-202ENST00000345865 KCNT2Q6UVM3 1135 aa16.01■□□□□ 0.15
UPF3B-202ENST00000345865 CDHR3Q6ZTQ4 885 aa16.01■□□□□ 0.15
UPF3B-202ENST00000345865 LIMS2Q7Z4I7 341 aa16.01■□□□□ 0.15
UPF3B-202ENST00000345865 APBB1IPQ7Z5R6 666 aaPredicted RBP16.01■□□□□ 0.15
UPF3B-202ENST00000345865 OSTM1Q86WC4 334 aa16.01■□□□□ 0.15
UPF3B-202ENST00000345865 ALKBH8Q96BT7 664 aaKnown RBP16.01■□□□□ 0.15
UPF3B-202ENST00000345865 UGT1A7Q9HAW7 530 aa16.01■□□□□ 0.15
UPF3B-202ENST00000345865 UGT1A10Q9HAW8 530 aa16.01■□□□□ 0.15
UPF3B-202ENST00000345865 UGT1A8Q9HAW9 530 aa16.01■□□□□ 0.15
UPF3B-202ENST00000345865 TMPRSS4Q9NRS4 437 aa16.01■□□□□ 0.15
UPF3B-202ENST00000345865 GDAP2Q9NXN4 497 aa16.01■□□□□ 0.15
UPF3B-202ENST00000345865 KANSL3Q9P2N6 904 aa16.01■□□□□ 0.15
UPF3B-202ENST00000345865 ZC3H7BQ9UGR2 993 aaKnown RBP16.01■□□□□ 0.15
UPF3B-202ENST00000345865 GTF2IRD1Q9UHL9 959 aa16.01■□□□□ 0.15
UPF3B-202ENST00000345865 USP3Q9Y6I4 520 aa16.01■□□□□ 0.15
UPF3B-202ENST00000345865 IQANK1A0A1B0GTG1 560 aa16.01■□□□□ 0.15
UPF3B-202ENST00000345865 ZNF487B1APH4 448 aa16.01■□□□□ 0.15
UPF3B-202ENST00000345865 LPXNO60711 386 aa16.01■□□□□ 0.15
UPF3B-202ENST00000345865 GOT1P17174 413 aa16.01■□□□□ 0.15
UPF3B-202ENST00000345865 MAGEA3P43357 314 aa16.01■□□□□ 0.15
UPF3B-202ENST00000345865 MFSD10Q14728 455 aa16.01■□□□□ 0.15
UPF3B-202ENST00000345865 SLC45A4Q5BKX6 768 aa16.01■□□□□ 0.15
UPF3B-202ENST00000345865 XKR4Q5GH76 650 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms