RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 PGBD4Q96DM1 585 aa13.59□□□□□ -0.23
COL18A1-201ENST00000342220 PCED1BQ96HM7 432 aa13.59□□□□□ -0.23
COL18A1-201ENST00000342220 SLC38A7Q9NVC3 462 aa13.59□□□□□ -0.23
COL18A1-201ENST00000342220 USP18Q9UMW8 372 aa13.59□□□□□ -0.23
COL18A1-201ENST00000342220 ARVCFO00192 962 aa13.59□□□□□ -0.23
COL18A1-201ENST00000342220 RASGRF2O14827 1237 aa13.59□□□□□ -0.23
COL18A1-201ENST00000342220 PAPSS1O43252 624 aaPredicted RBP13.59□□□□□ -0.23
COL18A1-201ENST00000342220 AGTP01019 485 aa13.59□□□□□ -0.23
COL18A1-201ENST00000342220 FAM200BP0CF97 657 aa13.59□□□□□ -0.23
COL18A1-201ENST00000342220 GPD1P21695 349 aa13.59□□□□□ -0.23
COL18A1-201ENST00000342220 AUHQ13825 339 aaKnown RBP13.59□□□□□ -0.23
COL18A1-201ENST00000342220 TRIM60Q495X7 471 aa13.59□□□□□ -0.23
COL18A1-201ENST00000342220 LACTB2Q53H82 288 aaPredicted RBP13.59□□□□□ -0.23
COL18A1-201ENST00000342220 HIBCHQ6NVY1 386 aaPredicted RBP13.59□□□□□ -0.23
COL18A1-201ENST00000342220 GSTCDQ8NEC7 633 aa13.59□□□□□ -0.23
COL18A1-201ENST00000342220 ART4Q93070 314 aa13.59□□□□□ -0.23
COL18A1-201ENST00000342220 DDX23Q9BUQ8 820 aaKnown RBP13.59□□□□□ -0.23
COL18A1-201ENST00000342220 ULBP1Q9BZM6 244 aa13.59□□□□□ -0.23
COL18A1-201ENST00000342220 TMEM39AQ9NV64 488 aa13.59□□□□□ -0.23
COL18A1-201ENST00000342220 LRCH4O75427 683 aa13.58□□□□□ -0.23
COL18A1-201ENST00000342220 SMNDC1O75940 238 aaKnown RBP eCLIP13.58□□□□□ -0.233e-10■■■□□ 16.7
COL18A1-201ENST00000342220 MTA2O94776 668 aa13.58□□□□□ -0.23
COL18A1-201ENST00000342220 RARGP13631 454 aa13.58□□□□□ -0.23
COL18A1-201ENST00000342220 PAPOLAP51003 745 aaKnown RBP13.58□□□□□ -0.23
COL18A1-201ENST00000342220 ZNF252P-AS1Q0IIN9 211 aa13.58□□□□□ -0.23
COL18A1-201ENST00000342220 CYP1B1Q16678 543 aa13.58□□□□□ -0.23
COL18A1-201ENST00000342220 DDR2Q16832 855 aa13.58□□□□□ -0.23
COL18A1-201ENST00000342220 SLC39A12Q504Y0 691 aa13.58□□□□□ -0.23
COL18A1-201ENST00000342220 HFE2Q6ZVN8 426 aa13.58□□□□□ -0.23
COL18A1-201ENST00000342220 OTOP2Q7RTS6 562 aa13.58□□□□□ -0.23
COL18A1-201ENST00000342220 DEFB106AQ8N104 65 aa13.58□□□□□ -0.23
COL18A1-201ENST00000342220 ATAD1Q8NBU5 361 aa13.58□□□□□ -0.23
COL18A1-201ENST00000342220 SCAMP5Q8TAC9 235 aa13.58□□□□□ -0.23
COL18A1-201ENST00000342220 SEPT5Q99719 369 aaPredicted RBP13.58□□□□□ -0.23
COL18A1-201ENST00000342220 ELAC2Q9BQ52 826 aaKnown RBP13.58□□□□□ -0.23
COL18A1-201ENST00000342220 CASP8AP2Q9UKL3 1982 aa13.58□□□□□ -0.23
COL18A1-201ENST00000342220 DDHD2O94830 711 aa13.58□□□□□ -0.24
COL18A1-201ENST00000342220 ANP32DO95626 131 aa13.58□□□□□ -0.24
COL18A1-201ENST00000342220 VIMP08670 466 aaKnown RBP13.58□□□□□ -0.24
COL18A1-201ENST00000342220 SRGAP2BP0DMP2 458 aa13.58□□□□□ -0.24
COL18A1-201ENST00000342220 CYP2F1P24903 491 aa13.58□□□□□ -0.24
COL18A1-201ENST00000342220 SULT1E1P49888 294 aa13.58□□□□□ -0.24
COL18A1-201ENST00000342220 LONRF1Q17RB8 773 aa13.58□□□□□ -0.24
COL18A1-201ENST00000342220 ECHDC2Q86YB7 292 aa13.58□□□□□ -0.24
COL18A1-201ENST00000342220 URGCPQ8TCY9 931 aa13.58□□□□□ -0.24
COL18A1-201ENST00000342220 PAWRQ96IZ0 340 aaKnown RBP13.58□□□□□ -0.24
COL18A1-201ENST00000342220 HHIPL1Q96JK4 782 aa13.58□□□□□ -0.24
COL18A1-201ENST00000342220 TSC22D3Q99576 134 aa13.58□□□□□ -0.24
COL18A1-201ENST00000342220 PAPOLBQ9NRJ5 636 aaKnown RBP13.58□□□□□ -0.24
COL18A1-201ENST00000342220 DNPEPQ9ULA0 475 aa13.58□□□□□ -0.24
COL18A1-201ENST00000342220 A0A0U1RQF3 1178 aa13.58□□□□□ -0.24
COL18A1-201ENST00000342220 CCT8L1PA6NM43 557 aa13.58□□□□□ -0.24
COL18A1-201ENST00000342220 M0QYT0 321 aa13.58□□□□□ -0.24
COL18A1-201ENST00000342220 B4GALT3O60512 393 aa13.58□□□□□ -0.24
COL18A1-201ENST00000342220 SMIM24O75264 130 aa13.58□□□□□ -0.24
COL18A1-201ENST00000342220 ATP6V1G2O95670 118 aa13.58□□□□□ -0.24
COL18A1-201ENST00000342220 CACNA2D1P54289 1103 aa13.58□□□□□ -0.24
COL18A1-201ENST00000342220 PTK7Q13308 1070 aa13.58□□□□□ -0.24
COL18A1-201ENST00000342220 SLMAPQ14BN4 828 aa13.58□□□□□ -0.24
COL18A1-201ENST00000342220 RTN4RL1Q86UN2 441 aaPredicted RBP13.58□□□□□ -0.24
COL18A1-201ENST00000342220 PYROXD2Q8N2H3 581 aa13.58□□□□□ -0.24
COL18A1-201ENST00000342220 LRRC52Q8N7C0 313 aa13.58□□□□□ -0.24
COL18A1-201ENST00000342220 CCNYQ8ND76 341 aa13.58□□□□□ -0.24
COL18A1-201ENST00000342220 TMEM174Q8WUU8 243 aa13.58□□□□□ -0.24
COL18A1-201ENST00000342220 ASNSD1Q9NWL6 643 aa13.58□□□□□ -0.24
COL18A1-201ENST00000342220 PIRO00625 290 aa13.57□□□□□ -0.24
COL18A1-201ENST00000342220 LSM8O95777 96 aaKnown RBP13.57□□□□□ -0.24
COL18A1-201ENST00000342220 FAM163BP0C2L3 166 aa13.57□□□□□ -0.24
COL18A1-201ENST00000342220 GBP1P32455 592 aa13.57□□□□□ -0.24
COL18A1-201ENST00000342220 PNPLA4P41247 253 aa13.57□□□□□ -0.24
COL18A1-201ENST00000342220 BASP1P80723 227 aaKnown RBP13.57□□□□□ -0.24
COL18A1-201ENST00000342220 YWHAHQ04917 246 aaPredicted RBP13.57□□□□□ -0.24
COL18A1-201ENST00000342220 PTP4A2Q12974 167 aa13.57□□□□□ -0.24
COL18A1-201ENST00000342220 LRRC14Q15048 493 aa13.57□□□□□ -0.24
COL18A1-201ENST00000342220 SPATA21Q7Z572 469 aa13.57□□□□□ -0.24
COL18A1-201ENST00000342220 CCDC89Q8N998 374 aa13.57□□□□□ -0.24
COL18A1-201ENST00000342220 CXorf38Q8TB03 319 aa13.57□□□□□ -0.24
COL18A1-201ENST00000342220 MGARPQ8TDB4 240 aa13.57□□□□□ -0.24
COL18A1-201ENST00000342220 RSAD2Q8WXG1 361 aa13.57□□□□□ -0.24
COL18A1-201ENST00000342220 EPAS1Q99814 870 aa13.57□□□□□ -0.24
COL18A1-201ENST00000342220 KDM4CQ9H3R0 1056 aa13.57□□□□□ -0.24
COL18A1-201ENST00000342220 AVENQ9NQS1 362 aaPredicted RBP13.57□□□□□ -0.24
COL18A1-201ENST00000342220 PIH1D1Q9NWS0 290 aaKnown RBP13.57□□□□□ -0.24
COL18A1-201ENST00000342220 SNX10Q9Y5X0 201 aa13.57□□□□□ -0.24
COL18A1-201ENST00000342220 FOXO6A8MYZ6 492 aa13.57□□□□□ -0.24
COL18A1-201ENST00000342220 SETSIPP0DME0 302 aa13.57□□□□□ -0.24
COL18A1-201ENST00000342220 CREB1P16220 341 aa13.57□□□□□ -0.24
COL18A1-201ENST00000342220 BCAT1P54687 386 aa13.57□□□□□ -0.24
COL18A1-201ENST00000342220 BST2Q10589 180 aaKnown RBP13.57□□□□□ -0.24
COL18A1-201ENST00000342220 MGAT5BQ3V5L5 792 aa13.57□□□□□ -0.24
COL18A1-201ENST00000342220 LCLAT1Q6UWP7 414 aa13.57□□□□□ -0.24
COL18A1-201ENST00000342220 CDC42EP4Q9H3Q1 356 aaKnown RBP13.57□□□□□ -0.24
COL18A1-201ENST00000342220 NAALADL1Q9UQQ1 740 aa13.57□□□□□ -0.24
COL18A1-201ENST00000342220 C15orf41Q9Y2V0 281 aa13.57□□□□□ -0.24
COL18A1-201ENST00000342220 GAS8O95995 478 aa13.57□□□□□ -0.24
COL18A1-201ENST00000342220 TSPY1Q01534 308 aa13.57□□□□□ -0.24
COL18A1-201ENST00000342220 PIGHQ14442 188 aaPredicted RBP13.57□□□□□ -0.24
COL18A1-201ENST00000342220 ZBTB6Q15916 424 aa13.57□□□□□ -0.24
COL18A1-201ENST00000342220 NOMO2Q5JPE7 1267 aa13.57□□□□□ -0.24
COL18A1-201ENST00000342220 KIAA0319Q5VV43 1072 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms