RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 GHRP10912 638 aa10.74□□□□□ -0.69
LIMA1-201ENST00000341247 PYGBP11216 843 aa10.74□□□□□ -0.69
LIMA1-201ENST00000341247 YWHAZP63104 245 aaKnown RBP10.74□□□□□ -0.69
LIMA1-201ENST00000341247 BST2Q10589 180 aaKnown RBP10.74□□□□□ -0.69
LIMA1-201ENST00000341247 NR1H3Q13133 447 aa10.74□□□□□ -0.69
LIMA1-201ENST00000341247 KCNJ11Q14654 390 aa10.74□□□□□ -0.69
LIMA1-201ENST00000341247 ZBTB6Q15916 424 aa10.74□□□□□ -0.69
LIMA1-201ENST00000341247 KLHL38Q2WGJ6 581 aa10.74□□□□□ -0.69
LIMA1-201ENST00000341247 PAN2Q504Q3 1202 aaKnown RBP10.74□□□□□ -0.69
LIMA1-201ENST00000341247 SPRYD7Q5W111 196 aa10.74□□□□□ -0.69
LIMA1-201ENST00000341247 CASC4Q6P4E1 433 aa10.74□□□□□ -0.69
LIMA1-201ENST00000341247 PIGZQ86VD9 579 aa10.74□□□□□ -0.69
LIMA1-201ENST00000341247 TDRPQ86YL5 185 aa10.74□□□□□ -0.69
LIMA1-201ENST00000341247 TP53INP2Q8IXH6 220 aa10.74□□□□□ -0.69
LIMA1-201ENST00000341247 ADGRF2Q8IZF7 708 aa10.74□□□□□ -0.69
LIMA1-201ENST00000341247 GTF3C2Q8WUA4 911 aaPredicted RBP10.74□□□□□ -0.69
LIMA1-201ENST00000341247 LPPQ93052 612 aa10.74□□□□□ -0.69
LIMA1-201ENST00000341247 KCTD15Q96SI1 283 aaPredicted RBP10.74□□□□□ -0.69
LIMA1-201ENST00000341247 CYTH2Q99418 400 aa10.74□□□□□ -0.69
LIMA1-201ENST00000341247 SLC13A1Q9BZW2 595 aa10.74□□□□□ -0.69
LIMA1-201ENST00000341247 ZC3H7BQ9UGR2 993 aaKnown RBP10.74□□□□□ -0.69
LIMA1-201ENST00000341247 IPPQ9Y573 584 aa10.74□□□□□ -0.69
LIMA1-201ENST00000341247 NRCAMQ92823 1304 aa10.74□□□□□ -0.69
LIMA1-201ENST00000341247 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.73□□□□□ -0.69
LIMA1-201ENST00000341247 LOC102724159A0A0B4J2E5 919 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 TYROBPO43914 113 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 HUS1O60921 280 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 DESP17661 470 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 SULT1E1P49888 294 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 IRX4P78413 519 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 ELF3P78545 371 aaPredicted RBP10.73□□□□□ -0.69
LIMA1-201ENST00000341247 PWP2Q15269 919 aaKnown RBP10.73□□□□□ -0.69
LIMA1-201ENST00000341247 STILQ15468 1287 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 FAM110CQ1W6H9 321 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 WSCD1Q658N2 575 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 ANKRD23Q86SG2 305 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 VSIG1Q86XK7 387 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 UNC5BQ8IZJ1 945 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 TMEM237Q96Q45 408 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 PLEKHA5Q9HAU0 1116 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 PAK5Q9P286 719 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 SLC17A6Q9P2U8 582 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 ZMYND8Q9ULU4 1186 aaPredicted RBP10.73□□□□□ -0.69
LIMA1-201ENST00000341247 SMG5Q9UPR3 1016 aaKnown RBP10.73□□□□□ -0.69
LIMA1-201ENST00000341247 LPXNO60711 386 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 F2P00734 622 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 F7P08709 466 aaPredicted RBP10.73□□□□□ -0.69
LIMA1-201ENST00000341247 L1CAMP32004 1257 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 PSEN2P49810 448 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 TAF6P49848 677 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 PDK2Q15119 407 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 ICE2Q659A1 982 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 ADGRD1Q6QNK2 874 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 NT5DC4Q86YG4 428 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 C2orf69Q8N8R5 385 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 ANKRD52Q8NB46 1076 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 ZNF75CPQ92670 426 aaPredicted RBP10.73□□□□□ -0.69
LIMA1-201ENST00000341247 KLC2Q9H0B6 622 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 MYLK2Q9H1R3 596 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 IL1RAPL1Q9NZN1 696 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 SCN4AP35499 1836 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 C2orf71A6NGG8 1288 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 TRIM49D1C9J1S8 452 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 PRPF4O43172 522 aaKnown RBP eCLIP10.73□□□□□ -0.69
LIMA1-201ENST00000341247 TARSP26639 723 aaKnown RBP10.73□□□□□ -0.69
LIMA1-201ENST00000341247 CTGFP29279 349 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 BCAT1P54687 386 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 SNCBQ16143 134 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 TRMT10BQ6PF06 316 aaKnown RBP10.73□□□□□ -0.69
LIMA1-201ENST00000341247 HFE2Q6ZVN8 426 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 OTOAQ7RTW8 1153 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 ZNF467Q7Z7K2 595 aaPredicted RBP10.73□□□□□ -0.69
LIMA1-201ENST00000341247 LRRC6Q86X45 466 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 NME8Q8N427 588 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 ANKLE1Q8NAG6 615 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 CCNYQ8ND76 341 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 PTPRN2Q92932 1015 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 FRMD8P1Q9BZ68 369 aaPredicted RBP10.73□□□□□ -0.69
LIMA1-201ENST00000341247 UNC80Q8N2C7 3258 aa10.73□□□□□ -0.69
LIMA1-201ENST00000341247 A0A0G2JND7 137 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 CCDC195A0A1B0GUA6 201 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 E7ESA3 106 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 I3L4J1 428 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 DNAJC8O75937 253 aaPredicted RBP10.72□□□□□ -0.69
LIMA1-201ENST00000341247 MAP3K7CLP57077 242 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 XRCC4Q13426 336 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 PDK4Q16654 411 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 APBB1IPQ7Z5R6 666 aaPredicted RBP10.72□□□□□ -0.69
LIMA1-201ENST00000341247 CAND1Q86VP6 1230 aaKnown RBP10.72□□□□□ -0.69
LIMA1-201ENST00000341247 CSPG4P5Q96PW8 444 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 CNTN3Q9P232 1028 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 TEX264Q9Y6I9 313 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 PIRO00625 290 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 CYB561D2O14569 222 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 TOP3BO95985 862 aaKnown RBP10.72□□□□□ -0.69
LIMA1-201ENST00000341247 C6orf222P0C671 652 aaPredicted RBP10.72□□□□□ -0.69
LIMA1-201ENST00000341247 LILRA4P59901 499 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 CAP1Q01518 475 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 AP1B1Q10567 949 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 OLIG2Q13516 323 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms