RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 SPRY2O43597 315 aa3.89□□□□□ -1.79
HMGB1-201ENST00000326004 USP1O94782 785 aa3.89□□□□□ -1.79
HMGB1-201ENST00000326004 LMNAP02545 664 aaKnown RBP3.89□□□□□ -1.79
HMGB1-201ENST00000326004 FGAP02671 866 aa3.89□□□□□ -1.79
HMGB1-201ENST00000326004 MCM5P33992 734 aa3.89□□□□□ -1.79
HMGB1-201ENST00000326004 PLA2G5P39877 138 aa3.89□□□□□ -1.79
HMGB1-201ENST00000326004 PBX1P40424 430 aa3.89□□□□□ -1.79
HMGB1-201ENST00000326004 GSTM5P46439 218 aa3.89□□□□□ -1.79
HMGB1-201ENST00000326004 TGFB2P61812 414 aa3.89□□□□□ -1.79
HMGB1-201ENST00000326004 TXNL4AP83876 142 aaKnown RBP3.89□□□□□ -1.79
HMGB1-201ENST00000326004 KCNJ12Q14500 433 aa3.89□□□□□ -1.79
HMGB1-201ENST00000326004 AASDHQ4L235 1098 aaPredicted RBP3.89□□□□□ -1.79
HMGB1-201ENST00000326004 INO80DQ53TQ3 878 aaPredicted RBP3.89□□□□□ -1.79
HMGB1-201ENST00000326004 TMEM196Q5HYL7 178 aa3.89□□□□□ -1.79
HMGB1-201ENST00000326004 PCID2Q5JVF3 399 aa3.89□□□□□ -1.79
HMGB1-201ENST00000326004 ATPAF1Q5TC12 328 aaPredicted RBP3.89□□□□□ -1.79
HMGB1-201ENST00000326004 CEP85Q6P2H3 762 aa3.89□□□□□ -1.79
HMGB1-201ENST00000326004 KLHL17Q6TDP4 642 aa3.89□□□□□ -1.79
HMGB1-201ENST00000326004 PCSK4Q6UW60 755 aa3.89□□□□□ -1.79
HMGB1-201ENST00000326004 SLC29A4Q7RTT9 530 aa3.89□□□□□ -1.79
HMGB1-201ENST00000326004 CLASRPQ8N2M8 674 aaKnown RBP3.89□□□□□ -1.79
HMGB1-201ENST00000326004 MYCT1Q8N699 235 aa3.89□□□□□ -1.79
HMGB1-201ENST00000326004 ANKRD42Q8N9B4 389 aa3.89□□□□□ -1.79
HMGB1-201ENST00000326004 BBC3Q96PG8 261 aaPredicted RBP3.89□□□□□ -1.79
HMGB1-201ENST00000326004 LENG8Q96PV6 779 aaPredicted RBP3.89□□□□□ -1.79
HMGB1-201ENST00000326004 EIF3CQ99613 913 aaKnown RBP3.89□□□□□ -1.79
HMGB1-201ENST00000326004 PAGR1Q9BTK6 254 aa3.89□□□□□ -1.79
HMGB1-201ENST00000326004 TMEM120AQ9BXJ8 343 aa3.89□□□□□ -1.79
HMGB1-201ENST00000326004 MAGEH1Q9H213 219 aa3.89□□□□□ -1.79
HMGB1-201ENST00000326004 ALG13Q9NP73 1137 aaKnown RBP3.89□□□□□ -1.79
HMGB1-201ENST00000326004 MORC2Q9Y6X9 1032 aaPredicted RBP3.89□□□□□ -1.79
HMGB1-201ENST00000326004 WDR33Q9C0J8 1336 aaKnown RBP3.89□□□□□ -1.79
HMGB1-201ENST00000326004 LOC102724159A0A0B4J2E5 919 aa3.88□□□□□ -1.79
HMGB1-201ENST00000326004 GXYLT2A0PJZ3 443 aa3.88□□□□□ -1.79
HMGB1-201ENST00000326004 TRIM38O00635 465 aa3.88□□□□□ -1.79
HMGB1-201ENST00000326004 FCHO1O14526 889 aa3.88□□□□□ -1.79
HMGB1-201ENST00000326004 MGST3O14880 152 aa3.88□□□□□ -1.79
HMGB1-201ENST00000326004 TNFRSF6BO95407 300 aa3.88□□□□□ -1.79
HMGB1-201ENST00000326004 ZNF37AP17032 561 aaPredicted RBP3.88□□□□□ -1.79
HMGB1-201ENST00000326004 DRD1P21728 446 aa3.88□□□□□ -1.79
HMGB1-201ENST00000326004 MMP8P22894 467 aa3.88□□□□□ -1.79
HMGB1-201ENST00000326004 YY1P25490 414 aa3.88□□□□□ -1.79
HMGB1-201ENST00000326004 DNASE1L3Q13609 305 aa3.88□□□□□ -1.79
HMGB1-201ENST00000326004 PWP2Q15269 919 aaKnown RBP3.88□□□□□ -1.79
HMGB1-201ENST00000326004 C4orf46Q504U0 113 aa3.88□□□□□ -1.79
HMGB1-201ENST00000326004 L1TD1Q5T7N2 865 aaKnown RBP3.88□□□□□ -1.79
HMGB1-201ENST00000326004 TSTD2Q5T7W7 516 aa3.88□□□□□ -1.79
HMGB1-201ENST00000326004 FAM90A2PQ658T7 463 aa3.88□□□□□ -1.79
HMGB1-201ENST00000326004 CCDC144NLQ6NUI1 221 aa3.88□□□□□ -1.79
HMGB1-201ENST00000326004 RINT1Q6NUQ1 792 aa3.88□□□□□ -1.79
HMGB1-201ENST00000326004 OLFML1Q6UWY5 402 aa3.88□□□□□ -1.79
HMGB1-201ENST00000326004 RINLQ6ZS11 566 aa3.88□□□□□ -1.79
HMGB1-201ENST00000326004 RFX8Q6ZV50 586 aa3.88□□□□□ -1.79
HMGB1-201ENST00000326004 RASAL3Q86YV0 1011 aa3.88□□□□□ -1.79
HMGB1-201ENST00000326004 P3H2Q8IVL5 708 aa3.88□□□□□ -1.79
HMGB1-201ENST00000326004 SLC16A11Q8NCK7 471 aa3.88□□□□□ -1.79
HMGB1-201ENST00000326004 SIMC1Q8NDZ2 872 aa3.88□□□□□ -1.79
HMGB1-201ENST00000326004 STT3BQ8TCJ2 826 aa3.88□□□□□ -1.79
HMGB1-201ENST00000326004 TRIM63Q969Q1 353 aa3.88□□□□□ -1.79
HMGB1-201ENST00000326004 PAAF1Q9BRP4 392 aa3.88□□□□□ -1.79
HMGB1-201ENST00000326004 RTKNQ9BST9 563 aa3.88□□□□□ -1.79
HMGB1-201ENST00000326004 ISCA1Q9BUE6 129 aa3.88□□□□□ -1.79
HMGB1-201ENST00000326004 CINPQ9BW66 212 aaPredicted RBP3.88□□□□□ -1.79
HMGB1-201ENST00000326004 SCAND2PQ9GZW5 306 aaPredicted RBP3.88□□□□□ -1.79
HMGB1-201ENST00000326004 EPS8L2Q9H6S3 715 aa3.88□□□□□ -1.79
HMGB1-201ENST00000326004 FSCN3Q9NQT6 498 aa3.88□□□□□ -1.79
HMGB1-201ENST00000326004 TFCP2L1Q9NZI6 479 aa3.88□□□□□ -1.79
HMGB1-201ENST00000326004 ING1Q9UK53 422 aaPredicted RBP3.88□□□□□ -1.79
HMGB1-201ENST00000326004 ST3GAL5Q9UNP4 418 aa3.88□□□□□ -1.79
HMGB1-201ENST00000326004 SCAF8Q9UPN6 1271 aaKnown RBP3.88□□□□□ -1.79
HMGB1-201ENST00000326004 DMRT1Q9Y5R6 373 aa3.88□□□□□ -1.79
HMGB1-201ENST00000326004 EFCAB8A8MWE9 144 aa3.87□□□□□ -1.79
HMGB1-201ENST00000326004 CTIFO43310 598 aaKnown RBP3.87□□□□□ -1.79
HMGB1-201ENST00000326004 DNPH1O43598 174 aa3.87□□□□□ -1.79
HMGB1-201ENST00000326004 TAF5LO75529 589 aa3.87□□□□□ -1.79
HMGB1-201ENST00000326004 JTBO76095 146 aa3.87□□□□□ -1.79
HMGB1-201ENST00000326004 ACTL6BO94805 426 aa3.87□□□□□ -1.79
HMGB1-201ENST00000326004 VEGFAP15692 232 aaPredicted RBP3.87□□□□□ -1.79
HMGB1-201ENST00000326004 GPD1P21695 349 aa3.87□□□□□ -1.79
HMGB1-201ENST00000326004 ITPKBP27987 946 aa3.87□□□□□ -1.79
HMGB1-201ENST00000326004 DIO1P49895 249 aa3.87□□□□□ -1.79
HMGB1-201ENST00000326004 AP2B1P63010 937 aa3.87□□□□□ -1.79
HMGB1-201ENST00000326004 PSG6Q00889 435 aa3.87□□□□□ -1.79
HMGB1-201ENST00000326004 CCDC15Q0P6D6 951 aa3.87□□□□□ -1.79
HMGB1-201ENST00000326004 LMAN2Q12907 356 aa3.87□□□□□ -1.79
HMGB1-201ENST00000326004 SEMA3BQ13214 749 aa3.87□□□□□ -1.79
HMGB1-201ENST00000326004 PRKG1Q13976 671 aa3.87□□□□□ -1.79
HMGB1-201ENST00000326004 GRM4Q14833 912 aa3.87□□□□□ -1.79
HMGB1-201ENST00000326004 P3H1Q32P28 736 aa3.87□□□□□ -1.79
HMGB1-201ENST00000326004 TRIM60Q495X7 471 aa3.87□□□□□ -1.79
HMGB1-201ENST00000326004 AKNAD1Q5T1N1 836 aa3.87□□□□□ -1.79
HMGB1-201ENST00000326004 GRHL2Q6ISB3 625 aa3.87□□□□□ -1.79
HMGB1-201ENST00000326004 MSANTD2Q6P1R3 559 aa3.87□□□□□ -1.79
HMGB1-201ENST00000326004 PIK3AP1Q6ZUJ8 805 aa3.87□□□□□ -1.79
HMGB1-201ENST00000326004 RAB11FIP2Q7L804 512 aa3.87□□□□□ -1.79
HMGB1-201ENST00000326004 SLC44A2Q8IWA5 706 aaPredicted RBP3.87□□□□□ -1.79
HMGB1-201ENST00000326004 CCDC117Q8IWD4 279 aaPredicted RBP3.87□□□□□ -1.79
HMGB1-201ENST00000326004 GALNT15Q8N3T1 639 aa3.87□□□□□ -1.79
HMGB1-201ENST00000326004 TERB1Q8NA31 727 aa3.87□□□□□ -1.79
HMGB1-201ENST00000326004 OTUD7AQ8TE49 926 aaPredicted RBP3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms