RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 ZNF484Q5JVG2 852 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 OTOP1Q7RTM1 612 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 CCDC126Q96EE4 140 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 NAT9Q9BTE0 207 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 C1orf50Q9BV19 199 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 MROH8Q9H579 483 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 ZFYVE28Q9HCC9 887 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 WDR70Q9NW82 654 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 TUBA8Q9NY65 449 aaPredicted RBP11.84□□□□□ -0.51
VPS39-201ENST00000318006 CLIC5Q9NZA1 410 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 ARMCX1Q9P291 453 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 KIF1AQ12756 1690 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 TIMM44O43615 452 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 WFS1O76024 890 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 SLITRK3O94933 977 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 MED26O95402 600 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 MYBL2P10244 700 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 MAPTP10636 758 aaKnown RBP11.84□□□□□ -0.51
VPS39-201ENST00000318006 ALADP13716 330 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 CPA3P15088 417 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 PTGER2P43116 358 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 RARRES1P49788 294 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 CLCN3P51790 818 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 RAD23AP54725 363 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 RIPK1Q13546 671 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 TP53BP2Q13625 1128 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 ZNF235Q14590 738 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 CWF19L1Q69YN2 538 aaKnown RBP11.84□□□□□ -0.51
VPS39-201ENST00000318006 TTC27Q6P3X3 843 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 LRRC8DQ7L1W4 858 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 KLHL23Q8NBE8 558 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 RSPH1Q8WYR4 309 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 RMDN1Q96DB5 314 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 SGF29Q96ES7 293 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 APOPT1Q96IL0 206 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 MTMR12Q9C0I1 747 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 ADARB2Q9NS39 739 aaKnown RBP11.84□□□□□ -0.51
VPS39-201ENST00000318006 CLASP2O75122 1294 aaKnown RBP11.84□□□□□ -0.51
VPS39-201ENST00000318006 GNL1P36915 607 aaPredicted RBP11.84□□□□□ -0.51
VPS39-201ENST00000318006 PNPLA4P41247 253 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 RPL10AP62906 217 aaKnown RBP11.84□□□□□ -0.51
VPS39-201ENST00000318006 CYP24A1Q07973 514 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 CACNB2Q08289 660 aaPredicted RBP11.84□□□□□ -0.51
VPS39-201ENST00000318006 MAPK11Q15759 364 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 NEDD8Q15843 81 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 KIZQ2M2Z5 673 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 DCAF4L1Q3SXM0 396 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 BOLA3Q53S33 107 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 MPZL3Q6UWV2 235 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 NET1Q7Z628 596 aaPredicted RBP11.84□□□□□ -0.51
VPS39-201ENST00000318006 USP13Q92995 863 aaPredicted RBP11.84□□□□□ -0.51
VPS39-201ENST00000318006 PHF21AQ96BD5 680 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 PPP1R2P1Q96PQ5 205 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 CGRRF1Q99675 332 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 MTFR1LQ9H019 292 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 TCF7L2Q9NQB0 619 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 THAP1Q9NVV9 213 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 TJP2Q9UDY2 1190 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 PPP2R3BQ9Y5P8 575 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 RPS6KL1Q9Y6S9 549 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 MEI4A8MW99 385 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 ZNF862O60290 1169 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 ENTPD5O75356 428 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 TOMM70O94826 608 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 ME2P23368 584 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 NR1H2P55055 460 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 HUNKP57058 714 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 TRAF2Q12933 501 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 VEPH1Q14D04 833 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 FAXCQ5TGI0 409 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 NOP9Q86U38 636 aaKnown RBP11.84□□□□□ -0.51
VPS39-201ENST00000318006 ZFPM1Q8IX07 1006 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.84□□□□□ -0.51
VPS39-201ENST00000318006 ELMOD1Q8N336 334 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 RAET1EQ8TD07 263 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 OTULINQ96BN8 352 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 KCNQ5Q9NR82 932 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 TSR3Q9UJK0 312 aaKnown RBP11.84□□□□□ -0.51
VPS39-201ENST00000318006 UBQLN1Q9UMX0 589 aaKnown RBP11.84□□□□□ -0.51
VPS39-201ENST00000318006 TMA7Q9Y2S6 64 aaKnown RBP11.84□□□□□ -0.51
VPS39-201ENST00000318006 AKAP12Q02952 1782 aa11.83□□□□□ -0.51
VPS39-201ENST00000318006 SUPT3HB4E1H0 165 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 TAF4O00268 1085 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 WNT10BO00744 389 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 PGK2P07205 417 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 CAPN1P07384 714 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 SKIV2L2P42285 1042 aaKnown RBP11.83□□□□□ -0.52
VPS39-201ENST00000318006 GRIK5Q16478 980 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 DGUOKQ16854 277 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 ARMCX6Q7L4S7 300 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 SLC5A5Q92911 643 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 MTMR9Q96QG7 549 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 POP1Q99575 1024 aaKnown RBP11.83□□□□□ -0.52
VPS39-201ENST00000318006 THUMPD3Q9BV44 507 aaKnown RBP11.83□□□□□ -0.52
VPS39-201ENST00000318006 PEAK1Q9H792 1746 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 LRRC10BA6NIK2 292 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 C5orf58C9J3I9 102 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 EEF2KO00418 725 aaKnown RBP11.83□□□□□ -0.52
VPS39-201ENST00000318006 MTSS1O43312 755 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 TSC22D2O75157 780 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms