RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 PCDHB4Q9Y5E5 795 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 C2CD2LO14523 706 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 CABYRO75952 493 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 P4HA1P13674 534 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 PHBP35232 272 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 ZBTB17Q13105 803 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 PKN2Q16513 984 aaKnown RBP11.31□□□□□ -0.6
LSM3-201ENST00000306024 DNAL1Q4LDG9 190 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 EEF1DP3Q658K8 133 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 KAZNQ674X7 775 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 RIPOR1Q6ZS17 1223 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 KIAA0319LQ8IZA0 1049 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 PYDC1Q8WXC3 89 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 SEC14L1Q92503 715 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 GATA6Q92908 595 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 MANSC1Q9H8J5 431 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 MYADML2A6NDP7 307 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 FCHO1O14526 889 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 OR6B1O95007 311 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 STBD1O95210 358 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 ASMTLO95671 621 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 ADRB2P07550 413 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 MYL2P10916 166 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 AMPD1P23109 780 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 HOXD13P35453 343 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 CCR3P51677 355 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 ALDH18A1P54886 795 aaKnown RBP11.3□□□□□ -0.6
LSM3-201ENST00000306024 WDR4P57081 412 aaKnown RBP11.3□□□□□ -0.6
LSM3-201ENST00000306024 PURAQ00577 322 aaKnown RBP11.3□□□□□ -0.6
LSM3-201ENST00000306024 RASA2Q15283 850 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 PDK4Q16654 411 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 WDR72Q3MJ13 1102 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 SLC9A9Q8IVB4 645 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 PI4K2AQ9BTU6 479 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 KLHL4Q9C0H6 718 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 EBF3Q9H4W6 596 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 TMEM8AQ9HCN3 771 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 PCYOX1Q9UHG3 505 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 ADGRA2Q96PE1 1338 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 LSM1O15116 133 aaKnown RBP11.3□□□□□ -0.6
LSM3-201ENST00000306024 STAG3L1P0CL83 205 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 CTGFP29279 349 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 CDC16Q13042 620 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 TTC27Q6P3X3 843 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 PRUNE1Q86TP1 453 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 CTAGE3PQ8IX95 158 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 ZBED8Q8IZ13 594 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 ZNF564Q8TBZ8 553 aaPredicted RBP11.3□□□□□ -0.6
LSM3-201ENST00000306024 LRGUKQ96M69 825 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 PHF12Q96QT6 1004 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 TXLNGYQ9BZA5 131 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 RAB20Q9NX57 234 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 PTTG2Q9NZH5 202 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 MARCOQ9UEW3 520 aaPredicted RBP11.3□□□□□ -0.6
LSM3-201ENST00000306024 APPL1Q9UKG1 709 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 SMIM35A0A1B0GVV1 85 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 GOLGA8SH3BPF8 625 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 GOLGA8MH3BSY2 632 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 DDX3YO15523 660 aaKnown RBP11.3□□□□□ -0.6
LSM3-201ENST00000306024 PQBP1O60828 265 aaKnown RBP11.3□□□□□ -0.6
LSM3-201ENST00000306024 CXCL8P10145 99 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 GJA9P57773 515 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 TMPRSS15P98073 1019 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 ACAP1Q15027 740 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 PDK3Q15120 406 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 C16orf87Q6PH81 154 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 FOXR2Q6PJQ5 311 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 NCCRP1Q6ZVX7 275 aaPredicted RBP11.3□□□□□ -0.6
LSM3-201ENST00000306024 ABI1Q8IZP0 508 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 NRG4Q8WWG1 115 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 CASP10Q92851 521 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 CNBD2Q96M20 576 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 ACO2Q99798 780 aaKnown RBP11.3□□□□□ -0.6
LSM3-201ENST00000306024 IFT122Q9HBG6 1241 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 KLK14Q9P0G3 267 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 NUB1Q9Y5A7 615 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 CDY2AQ9Y6F7 541 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 SCINQ9Y6U3 715 aa11.3□□□□□ -0.6
LSM3-201ENST00000306024 HLA-DRAP01903 254 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 RPL5P46777 297 aaKnown RBP11.29□□□□□ -0.6
LSM3-201ENST00000306024 CHN2P52757 468 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 DLG4P78352 724 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 NCOA4Q13772 614 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 ZNF699Q32M78 642 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 ZNF667Q5HYK9 610 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 SV2AQ7L0J3 742 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 TMPRSS6Q8IU80 811 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 BTBD6Q96KE9 485 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 NUP85Q9BW27 656 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 SENP6Q9GZR1 1112 aaPredicted RBP11.29□□□□□ -0.6
LSM3-201ENST00000306024 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.29□□□□□ -0.6
LSM3-201ENST00000306024 TBC1D23Q9NUY8 699 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 PTPRFP10586 1907 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 ADCY6O43306 1168 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 NOL3O60936 208 aaKnown RBP11.29□□□□□ -0.6
LSM3-201ENST00000306024 ATF7P17544 494 aaPredicted RBP11.29□□□□□ -0.6
LSM3-201ENST00000306024 ARF4P18085 180 aaPredicted RBP11.29□□□□□ -0.6
LSM3-201ENST00000306024 ADRA1DP25100 572 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 IRF5Q13568 498 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 KYAT1Q16773 422 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms