RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 CRYBG2Q8N1P7 616 aa15.6■□□□□ 0.09
CCDC88B-201ENST00000301897 DEFB119Q8N690 84 aa15.6■□□□□ 0.09
CCDC88B-201ENST00000301897 PARD3BQ8TEW8 1205 aa15.6■□□□□ 0.09
CCDC88B-201ENST00000301897 DNAI2Q9GZS0 605 aa15.6■□□□□ 0.09
CCDC88B-201ENST00000301897 GZF1Q9H116 711 aaPredicted RBP15.6■□□□□ 0.09
CCDC88B-201ENST00000301897 CD248Q9HCU0 757 aa15.6■□□□□ 0.09
CCDC88B-201ENST00000301897 HCN2Q9UL51 889 aa15.6■□□□□ 0.09
CCDC88B-201ENST00000301897 LHX6Q9UPM6 363 aa15.6■□□□□ 0.09
CCDC88B-201ENST00000301897 SCML2Q9UQR0 700 aa15.6■□□□□ 0.09
CCDC88B-201ENST00000301897 MTMR6Q9Y217 621 aa15.6■□□□□ 0.09
CCDC88B-201ENST00000301897 LAMA5O15230 3695 aa15.59■□□□□ 0.09
CCDC88B-201ENST00000301897 STX6O43752 255 aa15.59■□□□□ 0.09
CCDC88B-201ENST00000301897 GREM1O60565 184 aa15.59■□□□□ 0.09
CCDC88B-201ENST00000301897 CUTAO60888 179 aa15.59■□□□□ 0.09
CCDC88B-201ENST00000301897 YEATS4O95619 227 aa15.59■□□□□ 0.09
CCDC88B-201ENST00000301897 FAM200BP0CF97 657 aa15.59■□□□□ 0.09
CCDC88B-201ENST00000301897 DGKGP49619 791 aa15.59■□□□□ 0.09
CCDC88B-201ENST00000301897 RING1Q06587 406 aa15.59■□□□□ 0.09
CCDC88B-201ENST00000301897 STARD3Q14849 445 aa15.59■□□□□ 0.09
CCDC88B-201ENST00000301897 ACAP1Q15027 740 aa15.59■□□□□ 0.09
CCDC88B-201ENST00000301897 TRIP6Q15654 476 aaKnown RBP15.59■□□□□ 0.09
CCDC88B-201ENST00000301897 SGSM1Q2NKQ1 1148 aa15.59■□□□□ 0.09
CCDC88B-201ENST00000301897 SCARA5Q6ZMJ2 495 aa15.59■□□□□ 0.09
CCDC88B-201ENST00000301897 TPGS1Q6ZTW0 290 aa15.59■□□□□ 0.09
CCDC88B-201ENST00000301897 CHCHD4Q8N4Q1 142 aa15.59■□□□□ 0.09
CCDC88B-201ENST00000301897 SLC2A14Q8TDB8 520 aa15.59■□□□□ 0.09
CCDC88B-201ENST00000301897 MRGPRX1Q96LB2 322 aa15.59■□□□□ 0.09
CCDC88B-201ENST00000301897 CDK5RAP1Q96SZ6 601 aaKnown RBP15.59■□□□□ 0.09
CCDC88B-201ENST00000301897 SMOQ99835 787 aa15.59■□□□□ 0.09
CCDC88B-201ENST00000301897 PNPLA8Q9NP80 782 aa15.59■□□□□ 0.09
CCDC88B-201ENST00000301897 FSCN3Q9NQT6 498 aa15.59■□□□□ 0.09
CCDC88B-201ENST00000301897 DNMT3LQ9UJW3 386 aa15.59■□□□□ 0.09
CCDC88B-201ENST00000301897 ZNF510Q9Y2H8 683 aa15.59■□□□□ 0.09
CCDC88B-201ENST00000301897 PCDHA5Q9Y5H7 936 aa15.59■□□□□ 0.09
CCDC88B-201ENST00000301897 TRIM24O15164 1050 aa15.58■□□□□ 0.08
CCDC88B-201ENST00000301897 GJB3O75712 270 aa15.58■□□□□ 0.08
CCDC88B-201ENST00000301897 C4BPAP04003 597 aaKnown RBP15.58■□□□□ 0.08
CCDC88B-201ENST00000301897 PLA2G4AP47712 749 aa15.58■□□□□ 0.08
CCDC88B-201ENST00000301897 MAP3K7CLP57077 242 aa15.58■□□□□ 0.08
CCDC88B-201ENST00000301897 KIAA1324Q6UXG2 1013 aaKnown RBP15.58■□□□□ 0.08
CCDC88B-201ENST00000301897 ZMIZ2Q8NF64 920 aa15.58■□□□□ 0.08
CCDC88B-201ENST00000301897 TMEM174Q8WUU8 243 aa15.58■□□□□ 0.08
CCDC88B-201ENST00000301897 WBP2Q969T9 261 aa15.58■□□□□ 0.08
CCDC88B-201ENST00000301897 ACOX2Q99424 681 aa15.58■□□□□ 0.08
CCDC88B-201ENST00000301897 APOBEC2Q9Y235 224 aaKnown RBP15.58■□□□□ 0.08
CCDC88B-201ENST00000301897 APC2O95996 2303 aa15.58■□□□□ 0.08
CCDC88B-201ENST00000301897 KNL1Q8NG31 2342 aa15.58■□□□□ 0.08
CCDC88B-201ENST00000301897 A0A1B0GTW7 788 aa15.57■□□□□ 0.08
CCDC88B-201ENST00000301897 LRRIQ3A6PVS8 624 aaPredicted RBP15.57■□□□□ 0.08
CCDC88B-201ENST00000301897 PRRT4C9JH25 899 aa15.57■□□□□ 0.08
CCDC88B-201ENST00000301897 SH3BP5O60239 455 aa15.57■□□□□ 0.08
CCDC88B-201ENST00000301897 TBX18O95935 607 aa15.57■□□□□ 0.08
CCDC88B-201ENST00000301897 CCDC130P13994 396 aa15.57■□□□□ 0.08
CCDC88B-201ENST00000301897 CD6P30203 668 aa15.57■□□□□ 0.08
CCDC88B-201ENST00000301897 CASP4P49662 377 aa15.57■□□□□ 0.08
CCDC88B-201ENST00000301897 PSEN1P49768 467 aa15.57■□□□□ 0.08
CCDC88B-201ENST00000301897 NDST1P52848 882 aa15.57■□□□□ 0.08
CCDC88B-201ENST00000301897 FAM193AP78312 1265 aa15.57■□□□□ 0.08
CCDC88B-201ENST00000301897 PROSER1Q86XN7 944 aa15.57■□□□□ 0.08
CCDC88B-201ENST00000301897 SLC9A9Q8IVB4 645 aa15.57■□□□□ 0.08
CCDC88B-201ENST00000301897 NAXDQ8IW45 347 aa15.57■□□□□ 0.08
CCDC88B-201ENST00000301897 ZNF276Q8N554 614 aa15.57■□□□□ 0.08
CCDC88B-201ENST00000301897 CADM4Q8NFZ8 388 aa15.57■□□□□ 0.08
CCDC88B-201ENST00000301897 UCMAQ8WVF2 138 aa15.57■□□□□ 0.08
CCDC88B-201ENST00000301897 ADAMTS14Q8WXS8 1223 aa15.57■□□□□ 0.08
CCDC88B-201ENST00000301897 SLC39A2Q9NP94 309 aa15.57■□□□□ 0.08
CCDC88B-201ENST00000301897 CACNA2D2Q9NY47 1150 aa15.57■□□□□ 0.08
CCDC88B-201ENST00000301897 FBXO10Q9UK96 956 aa15.57■□□□□ 0.08
CCDC88B-201ENST00000301897 SLC27A6Q9Y2P4 619 aa15.57■□□□□ 0.08
CCDC88B-201ENST00000301897 CABIN1Q9Y6J0 2220 aa15.56■□□□□ 0.08
CCDC88B-201ENST00000301897 IGSF10Q6WRI0 2623 aa15.56■□□□□ 0.08
CCDC88B-201ENST00000301897 MEI4A8MW99 385 aa15.56■□□□□ 0.08
CCDC88B-201ENST00000301897 POLR2DO15514 142 aaKnown RBP15.56■□□□□ 0.08
CCDC88B-201ENST00000301897 BEST1O76090 585 aa15.56■□□□□ 0.08
CCDC88B-201ENST00000301897 VNN1O95497 513 aa15.56■□□□□ 0.08
CCDC88B-201ENST00000301897 CISD3P0C7P0 127 aa15.56■□□□□ 0.08
CCDC88B-201ENST00000301897 FTH1P19P0C7X4 201 aa15.56■□□□□ 0.08
CCDC88B-201ENST00000301897 OXTRP30559 389 aa15.56■□□□□ 0.08
CCDC88B-201ENST00000301897 CHKAP35790 457 aa15.56■□□□□ 0.08
CCDC88B-201ENST00000301897 ZACNQ401N2 412 aa15.56■□□□□ 0.08
CCDC88B-201ENST00000301897 C10orf120Q5SQS8 335 aa15.56■□□□□ 0.08
CCDC88B-201ENST00000301897 IL27RAQ6UWB1 636 aa15.56■□□□□ 0.08
CCDC88B-201ENST00000301897 Q6ZNB5 142 aa15.56■□□□□ 0.08
CCDC88B-201ENST00000301897 TOGARAM2Q6ZUX3 1019 aa15.56■□□□□ 0.08
CCDC88B-201ENST00000301897 GLRX5Q86SX6 157 aa15.56■□□□□ 0.08
CCDC88B-201ENST00000301897 PLEKHO2Q8TD55 490 aa15.56■□□□□ 0.08
CCDC88B-201ENST00000301897 TMC2Q8TDI7 906 aa15.56■□□□□ 0.08
CCDC88B-201ENST00000301897 DNASE2BQ8WZ79 361 aa15.56■□□□□ 0.08
CCDC88B-201ENST00000301897 HNRNPABQ99729 332 aaKnown RBP15.56■□□□□ 0.08
CCDC88B-201ENST00000301897 IMPG2Q9BZV3 1241 aa15.56■□□□□ 0.08
CCDC88B-201ENST00000301897 DCLK3Q9C098 648 aa15.56■□□□□ 0.08
CCDC88B-201ENST00000301897 SDCBP2Q9H190 292 aa15.56■□□□□ 0.08
CCDC88B-201ENST00000301897 PRDM16Q9HAZ2 1276 aa15.56■□□□□ 0.08
CCDC88B-201ENST00000301897 MTPAPQ9NVV4 582 aaKnown RBP eCLIP15.56■□□□□ 0.08
CCDC88B-201ENST00000301897 DMAC2Q9NW81 257 aa15.56■□□□□ 0.08
CCDC88B-201ENST00000301897 FAM13BQ9NYF5 915 aa15.56■□□□□ 0.08
CCDC88B-201ENST00000301897 USP36Q9P275 1121 aaKnown RBP15.56■□□□□ 0.08
CCDC88B-201ENST00000301897 IKBKBO14920 756 aa15.55■□□□□ 0.08
CCDC88B-201ENST00000301897 CYP26A1O43174 497 aa15.55■□□□□ 0.08
CCDC88B-201ENST00000301897 SYNCRIPO60506 623 aaKnown RBP15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms