RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 DEUP1Q05D60 604 aa17.17■□□□□ 0.34
USP4-201ENST00000265560 CFAP58Q5T655 872 aa17.17■□□□□ 0.34
USP4-201ENST00000265560 KCTD16Q68DU8 428 aa17.17■□□□□ 0.34
USP4-201ENST00000265560 FUT10Q6P4F1 479 aa17.17■□□□□ 0.34
USP4-201ENST00000265560 FBXO46Q6PJ61 603 aaPredicted RBP17.17■□□□□ 0.34
USP4-201ENST00000265560 RNF157Q96PX1 679 aa17.17■□□□□ 0.34
USP4-201ENST00000265560 LCMT1Q9UIC8 334 aa17.17■□□□□ 0.34
USP4-201ENST00000265560 MICAL3Q7RTP6 2002 aa17.17■□□□□ 0.34
USP4-201ENST00000265560 FAM72CH0Y354 149 aa17.17■□□□□ 0.34
USP4-201ENST00000265560 TRAPPC3O43617 180 aa17.17■□□□□ 0.34
USP4-201ENST00000265560 CLTBP09497 229 aa17.17■□□□□ 0.34
USP4-201ENST00000265560 HSPA8P11142 646 aaKnown RBP17.17■□□□□ 0.34
USP4-201ENST00000265560 VCPP55072 806 aaKnown RBP17.17■□□□□ 0.34
USP4-201ENST00000265560 EIF3EP60228 445 aaKnown RBP17.17■□□□□ 0.34
USP4-201ENST00000265560 GPS1Q13098 491 aa17.17■□□□□ 0.34
USP4-201ENST00000265560 CALCOCO2Q13137 446 aa17.17■□□□□ 0.34
USP4-201ENST00000265560 FAM72AQ5TYM5 149 aa17.17■□□□□ 0.34
USP4-201ENST00000265560 FAM72DQ6L9T8 149 aa17.17■□□□□ 0.34
USP4-201ENST00000265560 BBS12Q6ZW61 710 aa17.17■□□□□ 0.34
USP4-201ENST00000265560 BHLHA9Q7RTU4 235 aa17.17■□□□□ 0.34
USP4-201ENST00000265560 TMC3Q7Z5M5 1100 aa17.17■□□□□ 0.34
USP4-201ENST00000265560 FAM72BQ86X60 149 aa17.17■□□□□ 0.34
USP4-201ENST00000265560 RUBCNQ92622 972 aa17.17■□□□□ 0.34
USP4-201ENST00000265560 CENPIQ92674 756 aaPredicted RBP17.17■□□□□ 0.34
USP4-201ENST00000265560 SEMA4AQ9H3S1 761 aa17.17■□□□□ 0.34
USP4-201ENST00000265560 MTMR10Q9NXD2 777 aa17.17■□□□□ 0.34
USP4-201ENST00000265560 VPS18Q9P253 973 aa17.17■□□□□ 0.34
USP4-201ENST00000265560 F5H423 210 aaPredicted RBP17.16■□□□□ 0.34
USP4-201ENST00000265560 FAM163BP0C2L3 166 aa17.16■□□□□ 0.34
USP4-201ENST00000265560 RBP3P10745 1247 aa17.16■□□□□ 0.34
USP4-201ENST00000265560 ATF2P15336 505 aa17.16■□□□□ 0.34
USP4-201ENST00000265560 TYMPP19971 482 aa17.16■□□□□ 0.34
USP4-201ENST00000265560 NOS2P35228 1153 aa17.16■□□□□ 0.34
USP4-201ENST00000265560 USP46P62068 366 aa17.16■□□□□ 0.34
USP4-201ENST00000265560 GBE1Q04446 702 aa17.16■□□□□ 0.34
USP4-201ENST00000265560 IKBKEQ14164 716 aa17.16■□□□□ 0.34
USP4-201ENST00000265560 OASLQ15646 514 aaKnown RBP17.16■□□□□ 0.34
USP4-201ENST00000265560 RAB41Q5JT25 222 aa17.16■□□□□ 0.34
USP4-201ENST00000265560 TP53INP2Q8IXH6 220 aa17.16■□□□□ 0.34
USP4-201ENST00000265560 ELAC1Q9H777 363 aaKnown RBP17.16■□□□□ 0.34
USP4-201ENST00000265560 CSNK1G1Q9HCP0 422 aa17.16■□□□□ 0.34
USP4-201ENST00000265560 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.16■□□□□ 0.34
USP4-201ENST00000265560 CWC15Q9P013 229 aaKnown RBP17.16■□□□□ 0.34
USP4-201ENST00000265560 SFMBT1Q9UHJ3 866 aa17.16■□□□□ 0.34
USP4-201ENST00000265560 PLAAQ9Y263 795 aa17.16■□□□□ 0.34
USP4-201ENST00000265560 FNDC1Q4ZHG4 1894 aaPredicted RBP17.16■□□□□ 0.34
USP4-201ENST00000265560 MSI1O43347 362 aaKnown RBP17.16■□□□□ 0.34
USP4-201ENST00000265560 CXCL10P02778 98 aa17.16■□□□□ 0.34
USP4-201ENST00000265560 GJA8P48165 433 aa17.16■□□□□ 0.34
USP4-201ENST00000265560 GAD2Q05329 585 aa17.16■□□□□ 0.34
USP4-201ENST00000265560 MTMR3Q13615 1198 aa17.16■□□□□ 0.34
USP4-201ENST00000265560 DNAJC21Q5F1R6 531 aaKnown RBP17.16■□□□□ 0.34
USP4-201ENST00000265560 PLD5Q8N7P1 536 aa17.16■□□□□ 0.34
USP4-201ENST00000265560 UBE2Q2Q8WVN8 375 aa17.16■□□□□ 0.34
USP4-201ENST00000265560 P3H4Q92791 437 aa17.16■□□□□ 0.34
USP4-201ENST00000265560 ARL8AQ96BM9 186 aa17.16■□□□□ 0.34
USP4-201ENST00000265560 NPY6RQ99463 290 aa17.16■□□□□ 0.34
USP4-201ENST00000265560 PRDM10Q9NQV6 1147 aa17.16■□□□□ 0.34
USP4-201ENST00000265560 MYO9BQ13459 2157 aa17.16■□□□□ 0.34
USP4-201ENST00000265560 NLRC5Q86WI3 1866 aa17.16■□□□□ 0.34
USP4-201ENST00000265560 DAB1O75553 588 aa17.16■□□□□ 0.34
USP4-201ENST00000265560 OAZ2O95190 189 aa17.16■□□□□ 0.34
USP4-201ENST00000265560 ALDH7A1P49419 539 aaKnown RBP17.16■□□□□ 0.34
USP4-201ENST00000265560 SEPT5Q99719 369 aaPredicted RBP17.16■□□□□ 0.34
USP4-201ENST00000265560 CNGB3Q9NQW8 809 aa17.16■□□□□ 0.34
USP4-201ENST00000265560 NEU2Q9Y3R4 380 aa17.16■□□□□ 0.34
USP4-201ENST00000265560 SMIM23A6NLE4 172 aa17.15■□□□□ 0.34
USP4-201ENST00000265560 H7C0C1 242 aa17.15■□□□□ 0.34
USP4-201ENST00000265560 ATP5OP48047 213 aa17.15■□□□□ 0.34
USP4-201ENST00000265560 SLC35B2Q8TB61 432 aa17.15■□□□□ 0.34
USP4-201ENST00000265560 GRK7Q8WTQ7 553 aa17.15■□□□□ 0.34
USP4-201ENST00000265560 APBB2Q92870 758 aa17.15■□□□□ 0.34
USP4-201ENST00000265560 FAM204AQ9H8W3 233 aa17.15■□□□□ 0.34
USP4-201ENST00000265560 CYLDQ9NQC7 956 aa17.15■□□□□ 0.34
USP4-201ENST00000265560 CHD9Q3L8U1 2897 aa17.15■□□□□ 0.34
USP4-201ENST00000265560 SZT2Q5T011 3432 aa17.15■□□□□ 0.34
USP4-201ENST00000265560 PTPRDP23468 1912 aa17.15■□□□□ 0.34
USP4-201ENST00000265560 ENDOD1O94919 500 aa17.15■□□□□ 0.34
USP4-201ENST00000265560 DESP17661 470 aa17.15■□□□□ 0.34
USP4-201ENST00000265560 NUMBP49757 651 aa17.15■□□□□ 0.34
USP4-201ENST00000265560 SLC10A2Q12908 348 aaPredicted RBP17.15■□□□□ 0.34
USP4-201ENST00000265560 PTK6Q13882 451 aa17.15■□□□□ 0.34
USP4-201ENST00000265560 TAZQ16635 292 aa17.15■□□□□ 0.34
USP4-201ENST00000265560 HSP90B2PQ58FF3 399 aa17.15■□□□□ 0.34
USP4-201ENST00000265560 IZUMO3Q5VZ72 239 aa17.15■□□□□ 0.34
USP4-201ENST00000265560 SMYD5Q6GMV2 418 aa17.15■□□□□ 0.34
USP4-201ENST00000265560 DARS2Q6PI48 645 aaKnown RBP17.15■□□□□ 0.34
USP4-201ENST00000265560 RNF19BQ6ZMZ0 732 aa17.15■□□□□ 0.34
USP4-201ENST00000265560 MAP7D3Q8IWC1 876 aa17.15■□□□□ 0.34
USP4-201ENST00000265560 RNF34Q969K3 372 aa17.15■□□□□ 0.34
USP4-201ENST00000265560 TOX2Q96NM4 488 aa17.15■□□□□ 0.34
USP4-201ENST00000265560 COLEC11Q9BWP8 271 aa17.15■□□□□ 0.34
USP4-201ENST00000265560 C11orf49Q9H6J7 331 aa17.15■□□□□ 0.34
USP4-201ENST00000265560 NMUR1Q9HB89 426 aa17.15■□□□□ 0.34
USP4-201ENST00000265560 ANAPC5Q9UJX4 755 aa17.15■□□□□ 0.34
USP4-201ENST00000265560 KLRC2P26717 231 aa17.14■□□□□ 0.34
USP4-201ENST00000265560 DUSP4Q13115 394 aa17.14■□□□□ 0.34
USP4-201ENST00000265560 MGAT5BQ3V5L5 792 aa17.14■□□□□ 0.34
USP4-201ENST00000265560 ALLCQ8N6M5 410 aa17.14■□□□□ 0.34
USP4-201ENST00000265560 AUTS2Q8WXX7 1259 aa17.14■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms