RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 CLCN3P51790 818 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 NEK3P51956 506 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 CCL15Q16663 113 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 TSNAXIP1Q2TAA8 658 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 MPP5Q8N3R9 675 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 ENDOVQ8N8Q3 282 aaKnown RBP10.44□□□□□ -0.74
LIG3-201ENST00000262327 PHC3Q8NDX5 983 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 SLC44A1Q8WWI5 657 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 SKA1Q96BD8 255 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 TMEM165Q9HC07 324 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 SAR1AQ9NR31 198 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 BLOC1S6Q9UL45 172 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 TRAFD1O14545 582 aaPredicted RBP10.44□□□□□ -0.74
LIG3-201ENST00000262327 USP1O94782 785 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 TNNC2P02585 160 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 PDGFRAP16234 1089 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 PAPOLAP51003 745 aaKnown RBP10.44□□□□□ -0.74
LIG3-201ENST00000262327 CRADDP78560 199 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 CA9Q16790 459 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 ZNF667Q5HYK9 610 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 C16orf46Q6P387 395 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 POLNQ7Z5Q5 900 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 MYLK4Q86YV6 388 aaPredicted RBP10.44□□□□□ -0.74
LIG3-201ENST00000262327 NIPA2Q8N8Q9 360 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 RXFP2Q8WXD0 754 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 STMN2Q93045 179 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 ZNF333Q96JL9 665 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 RILPQ96NA2 401 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 PGLYRP2Q96PD5 576 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 EBF4Q9BQW3 602 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 MROH8Q9H579 483 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 ZC3H7BQ9UGR2 993 aaKnown RBP10.44□□□□□ -0.74
LIG3-201ENST00000262327 LNPEPQ9UIQ6 1025 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 SIX4Q9UIU6 781 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 CPSF3Q9UKF6 684 aaKnown RBP10.44□□□□□ -0.74
LIG3-201ENST00000262327 TEX264Q9Y6I9 313 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 FARP2O94887 1054 aaPredicted RBP10.43□□□□□ -0.74
LIG3-201ENST00000262327 PSMG1O95456 288 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 BAG2O95816 211 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 PTPN7P35236 360 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 YWHAZP63104 245 aaKnown RBP10.43□□□□□ -0.74
LIG3-201ENST00000262327 UBAP2LQ14157 1087 aaKnown RBP10.43□□□□□ -0.74
LIG3-201ENST00000262327 KRT81Q14533 505 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 HSDL1Q3SXM5 330 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 ARMCX6Q7L4S7 300 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 KBTBD2Q8IY47 623 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 TEX9Q8N6V9 391 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 TTC13Q8NBP0 860 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 SLC4A11Q8NBS3 891 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 ANKRD36BP1Q96IX9 119 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 TTC1Q99614 292 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 LPIN3Q9BQK8 851 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 THTPAQ9BU02 230 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 ARHGEF4Q9NR80 690 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 NRBP2Q9NSY0 501 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 IL1RAPL1Q9NZN1 696 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 STOML1Q9UBI4 398 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 STRIP2Q9ULQ0 834 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 PCDHGC3Q9UN70 934 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 TRPM7Q96QT4 1865 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 PDHXO00330 501 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 LYPLA1O75608 230 aaPredicted RBP10.43□□□□□ -0.74
LIG3-201ENST00000262327 IQCF3P0C7M6 154 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 UBTFL6P0CB48 400 aaPredicted RBP10.43□□□□□ -0.74
LIG3-201ENST00000262327 CSH1P0DML2 217 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 CSH2P0DML3 217 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 IMPDH2P12268 514 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 VHLP40337 213 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 ATXN1P54253 815 aaKnown RBP10.43□□□□□ -0.74
LIG3-201ENST00000262327 AQP5P55064 265 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 MRPS5P82675 430 aaKnown RBP10.43□□□□□ -0.74
LIG3-201ENST00000262327 TAP1Q03518 808 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 KLC1Q07866 573 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 LRRC36Q1X8D7 754 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 BSPRYQ5W0U4 402 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 LRRC74BQ6ZQY2 392 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 SH2D5Q6ZV89 423 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 MFN1Q8IWA4 741 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 EFCAB3Q8N7B9 438 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 C1orf127Q8N9H9 656 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 RBM15BQ8NDT2 890 aaKnown RBP10.43□□□□□ -0.74
LIG3-201ENST00000262327 BRI3BPQ8WY22 251 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 COPS5Q92905 334 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 ZNF518BQ9C0D4 1074 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 TLE6Q9H808 572 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 PAPOLBQ9NRJ5 636 aaKnown RBP10.43□□□□□ -0.74
LIG3-201ENST00000262327 ARID2Q68CP9 1835 aa10.43□□□□□ -0.74
LIG3-201ENST00000262327 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.42□□□□□ -0.74
LIG3-201ENST00000262327 BTBD19C9JJ37 291 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 ZSCAN9O15535 394 aaPredicted RBP10.42□□□□□ -0.74
LIG3-201ENST00000262327 SMIM24O75264 130 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 ARIH2O95376 493 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 PGK2P07205 417 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 DHRS4L1P0CG22 281 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 GNAT1P11488 350 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 TFE3P19532 575 aaPredicted RBP10.42□□□□□ -0.74
LIG3-201ENST00000262327 PTPN11Q06124 597 aaPredicted RBP10.42□□□□□ -0.74
LIG3-201ENST00000262327 KCNJ11Q14654 390 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 POU5F2Q8N7G0 328 aa10.42□□□□□ -0.74
LIG3-201ENST00000262327 CMASQ8NFW8 434 aaPredicted RBP10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms