RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 EXOC7Q9UPT5 735 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 ZNF510Q9Y2H8 683 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 ZNFX1Q9P2E3 1918 aaKnown RBP14.88□□□□□ -0.03
SDC1-201ENST00000254351 KLRG2A4D1S0 409 aaPredicted RBP14.88□□□□□ -0.03
SDC1-201ENST00000254351 STX16-NPEPL1H3BU86 382 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 KCNN4O15554 427 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 CSDE1O75534 798 aaKnown RBP14.88□□□□□ -0.03
SDC1-201ENST00000254351 STAM2O75886 525 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 CSPG5O95196 566 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 CRTAMO95727 393 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 SLC5A2P31639 672 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 PPM1JQ5JR12 505 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 PPM1LQ5SGD2 360 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 TNS4Q8IZW8 715 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 TTC13Q8NBP0 860 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 LRGUKQ96M69 825 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 ZNF512Q96ME7 567 aaPredicted RBP14.88□□□□□ -0.03
SDC1-201ENST00000254351 MXRA8Q9BRK3 442 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 SSU72Q9NP77 194 aaKnown RBP14.88□□□□□ -0.03
SDC1-201ENST00000254351 GPATCH2LQ9NWQ4 482 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 FAM198AQ9UFP1 575 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 ZNF232Q9UNY5 417 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 COQ4Q9Y3A0 265 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 MCF2LO15068 1137 aa14.87□□□□□ -0.03
SDC1-201ENST00000254351 AMHP03971 560 aa14.87□□□□□ -0.03
SDC1-201ENST00000254351 SETSIPP0DME0 302 aa14.87□□□□□ -0.03
SDC1-201ENST00000254351 NUDT2P50583 147 aa14.87□□□□□ -0.03
SDC1-201ENST00000254351 PTP4A2Q12974 167 aa14.87□□□□□ -0.03
SDC1-201ENST00000254351 MTMR1Q13613 665 aa14.87□□□□□ -0.03
SDC1-201ENST00000254351 PDE1CQ14123 709 aaPredicted RBP14.87□□□□□ -0.03
SDC1-201ENST00000254351 SCYL2Q6P3W7 929 aa14.87□□□□□ -0.03
SDC1-201ENST00000254351 TMEM179Q6ZVK1 233 aa14.87□□□□□ -0.03
SDC1-201ENST00000254351 PCGF5Q86SE9 256 aa14.87□□□□□ -0.03
SDC1-201ENST00000254351 GLIS2Q9BZE0 524 aaPredicted RBP14.87□□□□□ -0.03
SDC1-201ENST00000254351 DRG1Q9Y295 367 aaKnown RBP14.87□□□□□ -0.03
SDC1-201ENST00000254351 SMIM31A0A1B0GVY4 71 aa14.87□□□□□ -0.03
SDC1-201ENST00000254351 SDR42E2A6NKP2 422 aa14.87□□□□□ -0.03
SDC1-201ENST00000254351 RFPL1O75677 317 aa14.87□□□□□ -0.03
SDC1-201ENST00000254351 VNN1O95497 513 aa14.87□□□□□ -0.03
SDC1-201ENST00000254351 ITGBL1O95965 494 aaPredicted RBP14.87□□□□□ -0.03
SDC1-201ENST00000254351 PENKP01210 267 aaPredicted RBP14.87□□□□□ -0.03
SDC1-201ENST00000254351 OSTNP61366 133 aa14.87□□□□□ -0.03
SDC1-201ENST00000254351 SLC18A2Q05940 514 aa14.87□□□□□ -0.03
SDC1-201ENST00000254351 CBX3Q13185 183 aa14.87□□□□□ -0.03
SDC1-201ENST00000254351 MYBPC2Q14324 1141 aa14.87□□□□□ -0.03
SDC1-201ENST00000254351 C16orf72Q14CZ0 275 aa14.87□□□□□ -0.03
SDC1-201ENST00000254351 PDPK2PQ6A1A2 396 aa14.87□□□□□ -0.03
SDC1-201ENST00000254351 KLHL35Q6PF15 583 aa14.87□□□□□ -0.03
SDC1-201ENST00000254351 SH2D5Q6ZV89 423 aa14.87□□□□□ -0.03
SDC1-201ENST00000254351 LDHDQ86WU2 507 aa14.87□□□□□ -0.03
SDC1-201ENST00000254351 NKD2Q969F2 451 aaPredicted RBP14.87□□□□□ -0.03
SDC1-201ENST00000254351 TBC1D22BQ9NU19 505 aa14.87□□□□□ -0.03
SDC1-201ENST00000254351 ASTN2O75129 1339 aaPredicted RBP14.86□□□□□ -0.03
SDC1-201ENST00000254351 ZNF541Q9H0D2 1346 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 TCP10L2B9ZVM9 353 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 DNAJA2O60884 412 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 CST3P01034 146 aaPredicted RBP14.86□□□□□ -0.03
SDC1-201ENST00000254351 VIL1P09327 827 aaKnown RBP14.86□□□□□ -0.03
SDC1-201ENST00000254351 PGGT1BP53609 377 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 MYBPC1Q00872 1141 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 ANO5Q75V66 913 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 ZBTB33Q86T24 672 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 TRIML2Q8N7C3 387 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 TFB1MQ8WVM0 346 aaKnown RBP14.86□□□□□ -0.03
SDC1-201ENST00000254351 PTTG2Q9NZH5 202 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 NXF1Q9UBU9 619 aaKnown RBP14.86□□□□□ -0.03
SDC1-201ENST00000254351 GNEQ9Y223 722 aaKnown RBP14.86□□□□□ -0.03
SDC1-201ENST00000254351 TMX2-CTNND1H3BSU7 103 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 ITGAXP20702 1163 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 ACO1P21399 889 aaKnown RBP14.86□□□□□ -0.03
SDC1-201ENST00000254351 SLC1A6P48664 564 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 CDH15P55291 814 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 CDKL1Q00532 357 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 PLOD1Q02809 727 aaPredicted RBP14.86□□□□□ -0.03
SDC1-201ENST00000254351 PRKG1Q13976 671 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 CCDC142Q17RM4 750 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 TEX44Q53QW1 395 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 KLC3Q6P597 504 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 CES3Q6UWW8 571 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 RBM12BQ8IXT5 1001 aaKnown RBP14.86□□□□□ -0.03
SDC1-201ENST00000254351 GAB3Q8WWW8 586 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 TMEM143Q96AN5 459 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 CATSPER2Q96P56 530 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 TUT1Q9H6E5 874 aaKnown RBP14.86□□□□□ -0.03
SDC1-201ENST00000254351 CAAP1Q9H8G2 361 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 GPAMQ9HCL2 828 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 CLRN2A0PK11 232 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 MMP8P22894 467 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 ADORA2AP29274 412 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 MAPK10P53779 464 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 HNRNPDQ14103 355 aaKnown RBP14.86□□□□□ -0.03
SDC1-201ENST00000254351 AOC3Q16853 763 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 ANKDD1AQ495B1 522 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 N4BP2L1Q5TBK1 243 aaPredicted RBP14.86□□□□□ -0.03
SDC1-201ENST00000254351 ITPRIPL1Q6GPH6 555 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 USP37Q86T82 979 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 ARFGAP1Q8N6T3 406 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 RNF169Q8NCN4 708 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 PIWIL2Q8TC59 973 aaKnown RBP14.86□□□□□ -0.03
SDC1-201ENST00000254351 DEPDC1BQ8WUY9 529 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms