RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 PCDH18Q9HCL0 1135 aa22.12■■□□□ 1.13
TRIM28-201ENST00000253024 C11orf97A0A1B0GVM6 126 aaPredicted RBP22.12■■□□□ 1.13
TRIM28-201ENST00000253024 EDNRBP24530 442 aa22.12■■□□□ 1.13
TRIM28-201ENST00000253024 MXRA7P84157 204 aa22.12■■□□□ 1.13
TRIM28-201ENST00000253024 KCNJ11Q14654 390 aa22.12■■□□□ 1.13
TRIM28-201ENST00000253024 R3HDM1Q15032 1099 aaKnown RBP22.12■■□□□ 1.13
TRIM28-201ENST00000253024 PPP1R14CQ8TAE6 165 aa22.12■■□□□ 1.13
TRIM28-201ENST00000253024 APOPT1Q96IL0 206 aa22.12■■□□□ 1.13
TRIM28-201ENST00000253024 ZMAT2Q96NC0 199 aaKnown RBP22.12■■□□□ 1.13
TRIM28-201ENST00000253024 CYLDQ9NQC7 956 aa22.12■■□□□ 1.13
TRIM28-201ENST00000253024 GABBR2O75899 941 aa22.11■■□□□ 1.13
TRIM28-201ENST00000253024 KCNA4P22459 653 aa22.11■■□□□ 1.13
TRIM28-201ENST00000253024 PEX6Q13608 980 aa22.11■■□□□ 1.13
TRIM28-201ENST00000253024 UBAP2LQ14157 1087 aaKnown RBP22.11■■□□□ 1.13
TRIM28-201ENST00000253024 HIPK4Q8NE63 616 aa22.11■■□□□ 1.13
TRIM28-201ENST00000253024 NT5C1AQ9BXI3 368 aa22.11■■□□□ 1.13
TRIM28-201ENST00000253024 PLAC1Q9HBJ0 212 aa22.11■■□□□ 1.13
TRIM28-201ENST00000253024 TTLL3Q9Y4R7 772 aa22.11■■□□□ 1.13
TRIM28-201ENST00000253024 CALB2P22676 271 aa22.11■■□□□ 1.13
TRIM28-201ENST00000253024 CYP2F1P24903 491 aa22.11■■□□□ 1.13
TRIM28-201ENST00000253024 PTPN4P29074 926 aa22.11■■□□□ 1.13
TRIM28-201ENST00000253024 SURF1Q15526 300 aa22.11■■□□□ 1.13
TRIM28-201ENST00000253024 UNC5AQ6ZN44 842 aa22.11■■□□□ 1.13
TRIM28-201ENST00000253024 POU5F2Q8N7G0 328 aa22.11■■□□□ 1.13
TRIM28-201ENST00000253024 ADAM32Q8TC27 787 aa22.11■■□□□ 1.13
TRIM28-201ENST00000253024 STK32AQ8WU08 396 aa22.11■■□□□ 1.13
TRIM28-201ENST00000253024 NAF1Q96HR8 494 aaKnown RBP22.11■■□□□ 1.13
TRIM28-201ENST00000253024 FAM161BQ96MY7 647 aa22.11■■□□□ 1.13
TRIM28-201ENST00000253024 YIPF3Q9GZM5 350 aa22.11■■□□□ 1.13
TRIM28-201ENST00000253024 TNFSF13BQ9Y275 285 aa22.11■■□□□ 1.13
TRIM28-201ENST00000253024 PAPSS1O43252 624 aaPredicted RBP22.11■■□□□ 1.13
TRIM28-201ENST00000253024 C22orf31O95567 290 aa22.11■■□□□ 1.13
TRIM28-201ENST00000253024 LMO2P25791 158 aa22.11■■□□□ 1.13
TRIM28-201ENST00000253024 AQP5P55064 265 aa22.11■■□□□ 1.13
TRIM28-201ENST00000253024 RSPH3Q86UC2 560 aa22.11■■□□□ 1.13
TRIM28-201ENST00000253024 CCDC185Q8N715 623 aa22.11■■□□□ 1.13
TRIM28-201ENST00000253024 USP6NLQ92738 828 aa22.11■■□□□ 1.13
TRIM28-201ENST00000253024 SMARCAD1Q9H4L7 1026 aa22.11■■□□□ 1.13
TRIM28-201ENST00000253024 BARX2Q9UMQ3 279 aaPredicted RBP22.11■■□□□ 1.13
TRIM28-201ENST00000253024 WASF2Q9Y6W5 498 aa22.11■■□□□ 1.13
TRIM28-201ENST00000253024 WDR27A2RRH5 827 aa22.1■■□□□ 1.13
TRIM28-201ENST00000253024 CNMDO75829 334 aa22.1■■□□□ 1.13
TRIM28-201ENST00000253024 IGFBP6P24592 240 aaPredicted RBP22.1■■□□□ 1.13
TRIM28-201ENST00000253024 RPL10AP62906 217 aaKnown RBP22.1■■□□□ 1.13
TRIM28-201ENST00000253024 MRPS5P82675 430 aaKnown RBP22.1■■□□□ 1.13
TRIM28-201ENST00000253024 RASA2Q15283 850 aa22.1■■□□□ 1.13
TRIM28-201ENST00000253024 MUM1Q2TAK8 710 aa22.1■■□□□ 1.13
TRIM28-201ENST00000253024 SLC45A4Q5BKX6 768 aa22.1■■□□□ 1.13
TRIM28-201ENST00000253024 KCNT2Q6UVM3 1135 aa22.1■■□□□ 1.13
TRIM28-201ENST00000253024 TREML1Q86YW5 311 aa22.1■■□□□ 1.13
TRIM28-201ENST00000253024 CCNYQ8ND76 341 aa22.1■■□□□ 1.13
TRIM28-201ENST00000253024 EIF2AQ9BY44 585 aaKnown RBP22.1■■□□□ 1.13
TRIM28-201ENST00000253024 CDHR5Q9HBB8 845 aa22.1■■□□□ 1.13
TRIM28-201ENST00000253024 B2RBV5 119 aa22.1■■□□□ 1.13
TRIM28-201ENST00000253024 E7ESA3 106 aa22.1■■□□□ 1.13
TRIM28-201ENST00000253024 HDAC4P56524 1084 aa22.1■■□□□ 1.13
TRIM28-201ENST00000253024 ENPEPQ07075 957 aa22.1■■□□□ 1.13
TRIM28-201ENST00000253024 CCDC15Q0P6D6 951 aa22.1■■□□□ 1.13
TRIM28-201ENST00000253024 THOC5Q13769 683 aaKnown RBP22.1■■□□□ 1.13
TRIM28-201ENST00000253024 ACSBG2Q5FVE4 666 aa22.1■■□□□ 1.13
TRIM28-201ENST00000253024 PPP1R2P3Q6NXS1 205 aa22.1■■□□□ 1.13
TRIM28-201ENST00000253024 NUDCD3Q8IVD9 361 aa22.1■■□□□ 1.13
TRIM28-201ENST00000253024 PDCD7Q8N8D1 485 aaKnown RBP22.1■■□□□ 1.13
TRIM28-201ENST00000253024 DEPDC1BQ8WUY9 529 aa22.1■■□□□ 1.13
TRIM28-201ENST00000253024 OSBPL1AQ9BXW6 950 aa22.1■■□□□ 1.13
TRIM28-201ENST00000253024 PPP1R12CQ9BZL4 782 aa22.1■■□□□ 1.13
TRIM28-201ENST00000253024 SDAD1Q9NVU7 687 aaKnown RBP eCLIP22.1■■□□□ 1.134e-8■■□□□ 14.4
TRIM28-201ENST00000253024 TAS2R1Q9NYW7 299 aa22.1■■□□□ 1.13
TRIM28-201ENST00000253024 SCN1AP35498 2009 aa22.09■■□□□ 1.13
TRIM28-201ENST00000253024 CREB3O43889 395 aa22.09■■□□□ 1.13
TRIM28-201ENST00000253024 DLDP09622 509 aaKnown RBP22.09■■□□□ 1.13
TRIM28-201ENST00000253024 VDRP11473 427 aa22.09■■□□□ 1.13
TRIM28-201ENST00000253024 GOT1P17174 413 aa22.09■■□□□ 1.13
TRIM28-201ENST00000253024 PTPN7P35236 360 aa22.09■■□□□ 1.13
TRIM28-201ENST00000253024 ETV4P43268 484 aa22.09■■□□□ 1.13
TRIM28-201ENST00000253024 NUMBP49757 651 aa22.09■■□□□ 1.13
TRIM28-201ENST00000253024 LRRC36Q1X8D7 754 aa22.09■■□□□ 1.13
TRIM28-201ENST00000253024 SLC26A11Q86WA9 606 aa22.09■■□□□ 1.13
TRIM28-201ENST00000253024 DHRS4Q9BTZ2 278 aa22.09■■□□□ 1.13
TRIM28-201ENST00000253024 VPS33BQ9H267 617 aa22.09■■□□□ 1.13
TRIM28-201ENST00000253024 POPDC2Q9HBU9 364 aa22.09■■□□□ 1.13
TRIM28-201ENST00000253024 ZNF358Q9NW07 568 aa22.09■■□□□ 1.13
TRIM28-201ENST00000253024 PACSIN3Q9UKS6 424 aa22.09■■□□□ 1.13
TRIM28-201ENST00000253024 PARP14Q460N5 1801 aa22.09■■□□□ 1.13
TRIM28-201ENST00000253024 IGKV6-21A0A0C4DH24 114 aa22.09■■□□□ 1.13
TRIM28-201ENST00000253024 A8MXQ7 604 aa22.09■■□□□ 1.13
TRIM28-201ENST00000253024 LGALS2P05162 132 aa22.09■■□□□ 1.13
TRIM28-201ENST00000253024 TGFB3P10600 412 aa22.09■■□□□ 1.13
TRIM28-201ENST00000253024 TUBP50607 506 aa22.09■■□□□ 1.13
TRIM28-201ENST00000253024 PPM1JQ5JR12 505 aa22.09■■□□□ 1.13
TRIM28-201ENST00000253024 CCDC62Q6P9F0 684 aa22.09■■□□□ 1.13
TRIM28-201ENST00000253024 SETD4Q9NVD3 440 aa22.09■■□□□ 1.13
TRIM28-201ENST00000253024 WDR35Q9P2L0 1181 aa22.09■■□□□ 1.13
TRIM28-201ENST00000253024 DOCK1Q14185 1865 aa22.09■■□□□ 1.13
TRIM28-201ENST00000253024 ACAT1P24752 427 aaKnown RBP22.08■■□□□ 1.13
TRIM28-201ENST00000253024 TFDP2Q14188 446 aa22.08■■□□□ 1.13
TRIM28-201ENST00000253024 SOWAHAQ2M3V2 549 aa22.08■■□□□ 1.13
TRIM28-201ENST00000253024 OXNAD1Q96HP4 312 aaPredicted RBP22.08■■□□□ 1.13
TRIM28-201ENST00000253024 KLC2Q9H0B6 622 aa22.08■■□□□ 1.13
TRIM28-201ENST00000253024 G3BP2Q9UN86 482 aaKnown RBP22.08■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms