RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 NCAPHQ15003 741 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 TMEM154Q6P9G4 183 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 ITIH5Q86UX2 942 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 PM20D2Q8IYS1 436 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 MIER2Q8N344 545 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 PJA1Q8NG27 643 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 TMA16Q96EY4 203 aaKnown RBP6.25□□□□□ -1.41
VPS13D-201ENST00000011700 PIDD1Q9HB75 910 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 CCDC177Q9NQR7 707 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-201ENST00000011700 MAN1C1Q9NR34 630 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.25□□□□□ -1.41
VPS13D-201ENST00000011700 COMMD3-BMI1R4GMX3 469 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 TNS3Q68CZ2 1445 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-201ENST00000011700 EFCAB10A6NFE3 127 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 TTLL8A6PVC2 850 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 CAND2O75155 1236 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 RAB27AP51159 221 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 SPATS1Q496A3 300 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 FAM47AQ5JRC9 791 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 EIF5AL1Q6IS14 154 aaKnown RBP6.25□□□□□ -1.41
VPS13D-201ENST00000011700 C11orf57Q6ZUT1 292 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-201ENST00000011700 CLCC1Q96S66 551 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 MYL10Q9BUA6 226 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 NIF3L1Q9GZT8 377 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 CLPBQ9H078 707 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 CYP4F11Q9HBI6 524 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 RPS6KB2Q9UBS0 482 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 TRIM10Q9UDY6 481 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 FIS1Q9Y3D6 152 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 DDHD2O94830 711 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 CD58P19256 250 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 RPS12P25398 132 aaKnown RBP6.25□□□□□ -1.41
VPS13D-201ENST00000011700 TWF1Q12792 350 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 CAMK2GQ13555 558 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-201ENST00000011700 TMEM44Q2T9K0 475 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 FBXO31Q5XUX0 539 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-201ENST00000011700 TAS2R42Q7RTR8 314 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 HERC6Q8IVU3 1022 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 ANKRD7Q92527 254 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 CENPIQ92674 756 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-201ENST00000011700 CPNE2Q96FN4 548 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-201ENST00000011700 KCTD5Q9NXV2 234 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 CKLFQ9UBR5 152 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 ZNF232Q9UNY5 417 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 MYO16Q9Y6X6 1858 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 MROH7-TTC4A0A0A0MT08 1334 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 NKRFO15226 690 aaKnown RBP eCLIP6.25□□□□□ -1.41
VPS13D-201ENST00000011700 PRCPP42785 496 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 STOX1Q6ZVD7 989 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 PAGE2Q7Z2X7 111 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 RDH11Q8TC12 318 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 PTCD3Q96EY7 689 aaKnown RBP6.25□□□□□ -1.41
VPS13D-201ENST00000011700 MGAT4AQ9UM21 535 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 PIPSLA2A3N6 862 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 CCDC182A6NF36 153 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 ENO1P06733 434 aaKnown RBP6.24□□□□□ -1.41
VPS13D-201ENST00000011700 FAM200BP0CF97 657 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 CYP19A1P11511 503 aaPredicted RBP6.24□□□□□ -1.41
VPS13D-201ENST00000011700 LHX1P48742 406 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 SLC30A8Q8IWU4 369 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 CLYBLQ8N0X4 340 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 SLC38A2Q96QD8 506 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 KCNK4Q9NYG8 393 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 CROTQ9UKG9 612 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 DFFAO00273 331 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 UCHL3P15374 230 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 RPL10AP62906 217 aaKnown RBP6.24□□□□□ -1.41
VPS13D-201ENST00000011700 FAM187BQ17R55 369 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 LPCAT2Q7L5N7 544 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 FAM220AQ7Z4H9 259 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 AHI1Q8N157 1196 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 TRMOQ9BU70 441 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 SLC25A23Q9BV35 468 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 ARL15Q9NXU5 204 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 CHI3L1P36222 383 aaPredicted RBP6.24□□□□□ -1.41
VPS13D-201ENST00000011700 GRM3Q14832 879 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 ZNF662Q6ZS27 426 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 R3HCC1LQ7Z5L2 792 aaKnown RBP6.24□□□□□ -1.41
VPS13D-201ENST00000011700 CMTR1Q8N1G2 835 aaKnown RBP6.24□□□□□ -1.41
VPS13D-201ENST00000011700 TTLL6Q8N841 843 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 EFHD2Q96C19 240 aaPredicted RBP6.24□□□□□ -1.41
VPS13D-201ENST00000011700 MOV10Q9HCE1 1003 aaKnown RBP6.24□□□□□ -1.41
VPS13D-201ENST00000011700 ADPRHL2Q9NX46 363 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 KIF26BQ2KJY2 2108 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 EMSYQ7Z589 1322 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 AKAP11Q9UKA4 1901 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 EEF2KO00418 725 aaKnown RBP6.24□□□□□ -1.41
VPS13D-201ENST00000011700 CHST10O43529 356 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 ERBB2P04626 1255 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 STAG3L1P0CL83 205 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 EXOSC10Q01780 885 aaKnown RBP6.24□□□□□ -1.41
VPS13D-201ENST00000011700 NCOA4Q13772 614 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 ACSBG1Q96GR2 724 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 CPNE1Q99829 537 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 COPS7BQ9H9Q2 264 aaPredicted RBP6.24□□□□□ -1.41
VPS13D-201ENST00000011700 BCLAF3A2AJT9 711 aaKnown RBP6.24□□□□□ -1.41
VPS13D-201ENST00000011700 MYL12BO14950 172 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 MDM4O15151 490 aa6.24□□□□□ -1.41
VPS13D-201ENST00000011700 PSEN1P49768 467 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms