RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, human

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCN1A-222	ENST00000642141	DLL3	Q9NYJ7	618 aa		10.85	□□□□□ -0.67
SCN1A-222	ENST00000642141	TBC1D14	Q9P2M4	693 aa		10.85	□□□□□ -0.67
SCN1A-222	ENST00000642141	ARMCX3	Q9UH62	379 aa	Predicted RBP	10.85	□□□□□ -0.67
SCN1A-222	ENST00000642141	MAN1B1	Q9UKM7	699 aa		10.85	□□□□□ -0.67
SCN1A-222	ENST00000642141	LAMA1	P25391	3075 aa		10.84	□□□□□ -0.67
SCN1A-222	ENST00000642141	HELZ	P42694	1942 aa	Known RBP	10.84	□□□□□ -0.67
SCN1A-222	ENST00000642141	TBC1D3B	A6NDS4	549 aa		10.84	□□□□□ -0.67
SCN1A-222	ENST00000642141	NEDD8-MDP1	E9PL57	170 aa		10.84	□□□□□ -0.67
SCN1A-222	ENST00000642141	SGK1	O00141	431 aa		10.84	□□□□□ -0.67
SCN1A-222	ENST00000642141	TULP2	O00295	520 aa		10.84	□□□□□ -0.67
SCN1A-222	ENST00000642141	GRIA2	P42262	883 aa		10.84	□□□□□ -0.67
SCN1A-222	ENST00000642141	WAS	P42768	502 aa		10.84	□□□□□ -0.67
SCN1A-222	ENST00000642141	TUB	P50607	506 aa		10.84	□□□□□ -0.67
SCN1A-222	ENST00000642141	KIF11	P52732	1056 aa		10.84	□□□□□ -0.67
SCN1A-222	ENST00000642141	GAD2	Q05329	585 aa		10.84	□□□□□ -0.67
SCN1A-222	ENST00000642141	C1QBP	Q07021	282 aa	Known RBP	10.84	□□□□□ -0.67
SCN1A-222	ENST00000642141	GOLGA7B	Q2TAP0	167 aa		10.84	□□□□□ -0.67
SCN1A-222	ENST00000642141	TMEM92	Q6UXU6	159 aa		10.84	□□□□□ -0.67
SCN1A-222	ENST00000642141	PRR23C	Q6ZRP0	262 aa		10.84	□□□□□ -0.67
SCN1A-222	ENST00000642141	FRMD1	Q8N878	549 aa		10.84	□□□□□ -0.67
SCN1A-222	ENST00000642141	SPATA20	Q8TB22	786 aa		10.84	□□□□□ -0.67
SCN1A-222	ENST00000642141	UBA3	Q8TBC4	463 aa		10.84	□□□□□ -0.67
SCN1A-222	ENST00000642141	RLN3	Q8WXF3	142 aa		10.84	□□□□□ -0.67
SCN1A-222	ENST00000642141	SPHK2	Q9NRA0	654 aa		10.84	□□□□□ -0.67
SCN1A-222	ENST00000642141	RXFP3	Q9NSD7	469 aa		10.84	□□□□□ -0.67
SCN1A-222	ENST00000642141	PLK2	Q9NYY3	685 aa		10.84	□□□□□ -0.67
SCN1A-222	ENST00000642141	HOOK1	Q9UJC3	728 aa	Known RBP	10.84	□□□□□ -0.67
SCN1A-222	ENST00000642141	SDK1	Q7Z5N4	2213 aa		10.84	□□□□□ -0.67
SCN1A-222	ENST00000642141	PRR5-ARHGAP8	B1AHC4	643 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	PIK3R2	O00459	728 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	SLC16A3	O15427	465 aa	Known RBP	10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	GREM1	O60565	184 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	TULP3	O75386	442 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	CD19	P15391	556 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	BMP6	P22004	513 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	STX17	P56962	302 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	ARHGAP8	P85298	464 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	ENPEP	Q07075	957 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	EFEMP1	Q12805	493 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	CUL2	Q13617	745 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	CSRP2	Q16527	193 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	PLK5	Q496M5	336 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	CCDC40	Q4G0X9	1142 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	C10orf76	Q5T2E6	689 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	TCEAL6	Q6IPX3	200 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	HTR3D	Q70Z44	454 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	PIGZ	Q86VD9	579 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	PGBD3	Q8N328	593 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	IL17RC	Q8NAC3	791 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	MDGA1	Q8NFP4	955 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	TCEAL3	Q969E4	200 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	SLC35C1	Q96A29	364 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	TIGD1	Q96MW7	591 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	DUSP9	Q99956	384 aa	Known RBP	10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	BBS2	Q9BXC9	721 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	DNAI2	Q9GZS0	605 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	DUSP15	Q9H1R2	295 aa	Predicted RBP	10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	CYLD	Q9NQC7	956 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	DNAJC17	Q9NVM6	304 aa	Known RBP	10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	MTPAP	Q9NVV4	582 aa	Known RBP eCLIP	10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	DEC1	Q9P2X7	70 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	RASAL2	Q9UJF2	1139 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	DNMT3L	Q9UJW3	386 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	MMP17	Q9ULZ9	603 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	CTNND2	Q9UQB3	1225 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	MYOF	Q9NZM1	2061 aa		10.83	□□□□□ -0.68
SCN1A-222	ENST00000642141	CEP250	Q9BV73	2442 aa		10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	CCDC163	A0A0D9SF12	145 aa		10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	PPP1R3G	B7ZBB8	358 aa		10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	PSMA7	O14818	248 aa		10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	ADAM23	O75077	832 aa		10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	KLKB1	P03952	638 aa		10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	RALA	P11233	206 aa		10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	TYR	P14679	529 aa		10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	BCKDHB	P21953	392 aa		10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	TNFRSF4	P43489	277 aa		10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	KIR2DL1	P43626	348 aa	Predicted RBP	10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	PLA2G4A	P47712	749 aa		10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	TKTL1	P51854	596 aa		10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	MRPS21	P82921	87 aa	Known RBP	10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	FOXK2	Q01167	660 aa		10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	CREB5	Q02930	508 aa		10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	LRRC63	Q05C16	580 aa		10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	PDE4C	Q08493	712 aa		10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	GOLGA8F	Q08AF8	430 aa		10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	GOLGA8DP	Q0D2H9	430 aa		10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	STIM1	Q13586	685 aa		10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	CRY1	Q16526	586 aa		10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	AASDH	Q4L235	1098 aa	Predicted RBP	10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	USP39	Q53GS9	565 aa	Known RBP	10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	TOGARAM2	Q6ZUX3	1019 aa		10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	RSRC2	Q7L4I2	434 aa	Known RBP	10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	CCDC186	Q7Z3E2	898 aa		10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	ETFBKMT	Q8IXQ9	262 aa		10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	ZC3H3	Q8IXZ2	948 aa	Known RBP	10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	PHTF2	Q8N3S3	785 aa		10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	DEFB119	Q8N690	84 aa		10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	C12orf50	Q8NA57	414 aa	Predicted RBP	10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	HMGB4	Q8WW32	186 aa		10.82	□□□□□ -0.68
SCN1A-222	ENST00000642141	NELFB	Q8WX92	580 aa		10.82	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms