RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 SPAM1P38567 509 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 RASSF2P50749 326 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 KLHL26Q53HC5 615 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 KCNT1Q5JUK3 1230 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 KIAA0408Q6ZU52 694 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 ZC3HAV1Q7Z2W4 902 aaKnown RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 TMC7Q7Z402 723 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 DENND6AQ8IWF6 608 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 GDPD5Q8WTR4 605 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 AFG1LQ8WV93 481 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 HDAC10Q969S8 669 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 ASPSCR1Q9BZE9 553 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 TRMT13Q9NUP7 481 aaKnown RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 MBD2Q9UBB5 411 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 CTNNAL1Q9UBT7 734 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 PRKAG3Q9UGI9 489 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 ZC3H7BQ9UGR2 993 aaKnown RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 FAM153AQ9UHL3 310 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 VAV3Q9UKW4 847 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 OR6C74A6NCV1 312 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 PDLIM1O00151 329 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 BTN3A3O00478 584 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 GAS7O60861 476 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 STX11O75558 287 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 GCATO75600 419 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 RBM34P42696 430 aaKnown RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 PEX6Q13608 980 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 CUL4AQ13619 759 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 CCDC58Q4VC31 144 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 RSBN1Q5VWQ0 802 aaPredicted RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 STYK1Q6J9G0 422 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 PDE12Q6L8Q7 609 aaKnown RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 MACC1Q6ZN28 852 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 EFL1Q7Z2Z2 1120 aaKnown RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 OR8K1Q8NGG5 319 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 CLHC1Q8NHS4 586 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 SNF8Q96H20 258 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 NUDT9Q9BW91 350 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 SYTL2Q9HCH5 934 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 NMRK1Q9NWW6 199 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 SLC39A1Q9NY26 324 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 STAP1Q9ULZ2 295 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 ZNF451Q9Y4E5 1061 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 NDUFB9Q9Y6M9 179 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 MAP3K5Q99683 1374 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 ZFC3H1O60293 1989 aaKnown RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 hCG_1807616A0A1W2PRN6 198 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 PPM1BO75688 479 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 ADH1AP07327 375 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 GGT5P36269 586 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 ZIK1Q3SY52 487 aaPredicted RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 ZNF805Q5CZA5 627 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 GPR65Q8IYL9 337 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 SLC17A8Q8NDX2 589 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 CEP95Q96GE4 821 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 INTS4Q96HW7 963 aaKnown RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 PSMC3IPQ9P2W1 217 aaPredicted RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 GIMAP2Q9UG22 337 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 INTS6Q9UL03 887 aaKnown RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 CNOT1A5YKK6 2376 aaKnown RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 TMEM238LA0A1B0GVL6 79 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 B4E171 279 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 BTBD19C9JJ37 291 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 B4GAT1O43505 415 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 PRKAR1AP10644 381 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 TUBP50607 506 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 PDE1AP54750 535 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 DGKDQ16760 1214 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 CARD16Q5EG05 197 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 C10orf120Q5SQS8 335 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 AFMIDQ63HM1 303 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 C2CD5Q86YS7 1000 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 SLC15A3Q8IY34 581 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 SELENOMQ8WWX9 145 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 UFSP2Q9NUQ7 469 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 MRPL22Q9NWU5 206 aaKnown RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 PPP1R14DQ9NXH3 145 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 ZNF510Q9Y2H8 683 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 PTPN22Q9Y2R2 807 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 PCDHGA11Q9Y5H2 935 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 ROR1Q01973 937 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 GRIN1Q05586 938 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 CAMK4Q16566 473 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 METTL2BQ6P1Q9 378 aaKnown RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 EIF3MQ7L2H7 374 aaKnown RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 EME1Q96AY2 570 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 ASCC2Q9H1I8 757 aaPredicted RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 ARHGAP28Q9P2N2 729 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 L3MBTL1Q9Y468 752 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 SNX14Q9Y5W7 946 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 WASLO00401 505 aaPredicted RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 ZNF197O14709 1029 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 SERPINA3P01011 423 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 SNRNP70P08621 437 aaKnown RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 KRT3P12035 628 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 NCF2P19878 526 aaPredicted RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 DNM1Q05193 864 aaKnown RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 STILQ15468 1287 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 TMEM95Q3KNT9 176 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 E4F1Q66K89 784 aaPredicted RBP3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms