RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 FBXO9Q9UK97 447 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-220ENST00000641603 GSTK1Q9Y2Q3 226 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 PCDHA3Q9Y5H8 950 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 MYO5CQ9NQX4 1742 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 NEO1Q92859 1461 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 IREB2P48200 963 aaKnown RBP4.81□□□□□ -1.64
SCN1A-220ENST00000641603 SLC9A3P48764 834 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 PABPC4Q13310 644 aaKnown RBP eCLIP4.81□□□□□ -1.64
SCN1A-220ENST00000641603 TXNRD1Q16881 649 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 EGFLAMQ63HQ2 1017 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 SPAG16Q8N0X2 631 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 TRMOQ9BU70 441 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 DENND2DQ9H6A0 471 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-220ENST00000641603 PCMTD2Q9NV79 361 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP4.81□□□□□ -1.64
SCN1A-220ENST00000641603 PCDHGB4Q9UN71 923 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 NAMPTP43490 491 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 FRG1Q14331 258 aaKnown RBP4.81□□□□□ -1.64
SCN1A-220ENST00000641603 PLS1Q14651 629 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 INO80DQ53TQ3 878 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-220ENST00000641603 LINC00299Q6ZSB3 139 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 BNIPLQ7Z465 357 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 SRPK1Q96SB4 655 aaKnown RBP4.81□□□□□ -1.64
SCN1A-220ENST00000641603 SUCOQ9UBS9 1254 aaKnown RBP4.81□□□□□ -1.64
SCN1A-220ENST00000641603 SALL3Q9BXA9 1300 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 DISP1Q96F81 1524 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 FAM92AA1XBS5 289 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 NCAM2O15394 837 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 KITP10721 976 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 OGNP20774 298 aaKnown RBP4.8□□□□□ -1.64
SCN1A-220ENST00000641603 PBX1P40424 430 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 SCN1BQ07699 218 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 VPS72Q15906 364 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 EPC2Q52LR7 807 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 XKR9Q5GH70 373 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 EFHC2Q5JST6 749 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 NAPEPLDQ6IQ20 393 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 TXNDC11Q6PKC3 985 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 SIX5Q8N196 739 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 DCAF4Q8WV16 495 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 NUAK2Q9H093 628 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 FAIMQ9NVQ4 179 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 FADS2P1A8MWK0 482 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 IFRD1O00458 451 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-220ENST00000641603 P4HBP07237 508 aaKnown RBP4.8□□□□□ -1.64
SCN1A-220ENST00000641603 SLC9A1P19634 815 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 RORAP35398 523 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 GMFBP60983 142 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 C1QBPQ07021 282 aaKnown RBP4.8□□□□□ -1.64
SCN1A-220ENST00000641603 FAM102BQ5T8I3 360 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 OSBP2Q969R2 916 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 MKL1Q969V6 931 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 KANSL2Q9H9L4 492 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 POLR1BQ9H9Y6 1135 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 SPAG4Q9NPE6 437 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 STOX2Q9P2F5 926 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-220ENST00000641603 RABL2AQ9UBK7 228 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-220ENST00000641603 POLG2Q9UHN1 485 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 GGT7Q9UJ14 662 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 VPS4AQ9UN37 437 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 RABL2BQ9UNT1 228 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 UTYO14607 1347 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 GPIP06744 558 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 EIF2AK2P19525 551 aaKnown RBP4.8□□□□□ -1.64
SCN1A-220ENST00000641603 CCND2P30279 289 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 AKT1P31749 480 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 RNF220Q5VTB9 566 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 TTC23LQ6PF05 361 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 SPERTQ8NA61 448 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 GOLM1Q8NBJ4 401 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 CCNYQ8ND76 341 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 MCUQ8NE86 351 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 NSMCE2Q96MF7 247 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 NLRP4Q96MN2 994 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 INPP4AQ96PE3 977 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-220ENST00000641603 ACSS3Q9H6R3 686 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 C17orf75Q9HAS0 396 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 TELO2Q9Y4R8 837 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 UBE2QL1A1L167 161 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 BTN3A3O00478 584 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 TNFRSF21O75509 655 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 PROSCO94903 275 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 DHFRP00374 187 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 COMTP21964 271 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 POLD2P49005 469 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 ANXA11P50995 505 aaKnown RBP4.8□□□□□ -1.64
SCN1A-220ENST00000641603 VAC14Q08AM6 782 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 CYP4Z2PQ8N1L4 340 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 DCUN1D5Q9BTE7 237 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 WDR41Q9HAD4 459 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 TMEM165Q9HC07 324 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 ARMC1Q9NVT9 282 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 GRIP1Q9Y3R0 1128 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 EFCAB10A6NFE3 127 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 A6NHS1 94 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 RGS5O15539 181 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 EPN2O95208 641 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 TGM6O95932 706 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 ANXA1P04083 346 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 PSAPP07602 524 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms