RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 V9GYQ6 96 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 hCG_1642624A0A1W2PR95 340 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 KCNJ18B7U540 433 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 ZC3H11AO75152 810 aaKnown RBP eCLIP2.86□□□□□ -1.952e-6■□□□□ 9.4
SCN1A-219ENST00000641575 SCO1O75880 301 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 HMOX2P30519 316 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 PIK3CAP42336 1068 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 BCAMP50895 628 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 JAK3P52333 1124 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 ARPC4P59998 168 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 KHDRBS1Q07666 443 aaKnown RBP eCLIP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 RUNX2Q13950 521 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 KCNJ12Q14500 433 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 TMEM132DQ14C87 1099 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 FAM98CQ17RN3 349 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 SYCE2Q6PIF2 218 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 SAMD7Q7Z3H4 446 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 TMC7Q7Z402 723 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 SFR1Q86XK3 245 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 ACSBG1Q96GR2 724 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 EGFL8Q99944 293 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 FTHL17Q9BXU8 183 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 TBC1D22BQ9NU19 505 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 AURKCQ9UQB9 309 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 PKP3Q9Y446 797 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 ERBINQ96RT1 1412 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 PFASO15067 1338 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 SF3B1O75533 1304 aaKnown RBP eCLIP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 ADGRA3Q8IWK6 1321 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 PRR23AA6NEV1 266 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 M0R129 80 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 DDX39AO00148 427 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 PLOD2O00469 737 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 AHCYL1O43865 530 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 SERPING1P05155 500 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 C6orf222P0C671 652 aaPredicted RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 AMD1P17707 334 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 MC3RP41968 323 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 PRAMEP78395 509 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 FOXD4Q12950 439 aaPredicted RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 DGKDQ16760 1214 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 SHROOM1Q2M3G4 852 aaPredicted RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 HABP4Q5JVS0 413 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 POTEHQ6S545 545 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 ARL9Q6T311 187 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 TICAM1Q8IUC6 712 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 OR8H2Q8N162 312 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 DEPDC1BQ8WUY9 529 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 HAVCR1Q96D42 359 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 SERPINB12Q96P63 405 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 UBXN6Q9BZV1 441 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 SP110Q9HB58 689 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 MRM3Q9HC36 420 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 TAB2Q9NYJ8 693 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 SPASTQ9UBP0 616 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 GPR160Q9UJ42 338 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 TNRQ92752 1358 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 KPNA7A9QM74 516 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 EI24O14681 340 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 APOL1O14791 398 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 TREHO43280 583 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 IL6P05231 212 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 TBXAS1P24557 533 aaPredicted RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 RAB27AP51159 221 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 CSTF3Q12996 717 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 GRM3Q14832 879 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 OR6B2Q6IFH4 312 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 EMBQ6PCB8 327 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 SARM1Q6SZW1 724 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 ZSCAN4Q8NAM6 433 aaPredicted RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 CCNYQ8ND76 341 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 MCPH1Q8NEM0 835 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 UBASH3BQ8TF42 649 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 CASD1Q96PB1 797 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 NPAS2Q99743 824 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 DPH5Q9H2P9 285 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 TMEM165Q9HC07 324 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 RGS18Q9NS28 235 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 RYDENQ9NUL5 291 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 BTBD7Q9P203 1132 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 STARD13Q9Y3M8 1113 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 PCNX3Q9H6A9 2034 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 A0A1W2PPH5 198 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 A0A1W2PQ67 120 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 RBM47A0AV96 593 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 C2orf72A6NCS6 295 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 SH2D7A6NKC9 451 aaPredicted RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 PMPCBO75439 489 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 PGLSO95336 258 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 ZNF806P0C7X5 589 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 GPTP24298 496 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 PPP2R1BP30154 601 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 CDH15P55291 814 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 TAP1Q03518 808 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 PTGES3Q15185 160 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 C2CD6Q53TS8 623 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 ATAT1Q5SQI0 421 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 BICRALQ6AI39 1079 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 ANKRD23Q86SG2 305 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms