RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 TAF4BQ92750 862 aa17.39■□□□□ 0.37
CLN3-255ENST00000637100 ZNF396Q96N95 335 aaPredicted RBP17.39■□□□□ 0.37
CLN3-255ENST00000637100 FBXO44Q9H4M3 255 aa17.39■□□□□ 0.37
CLN3-255ENST00000637100 ZDHHC4Q9NPG8 344 aa17.39■□□□□ 0.37
CLN3-255ENST00000637100 GMIPQ9P107 970 aa17.39■□□□□ 0.37
CLN3-255ENST00000637100 TFIP11Q9UBB9 837 aaKnown RBP17.39■□□□□ 0.37
CLN3-255ENST00000637100 CACNA1EQ15878 2313 aa17.38■□□□□ 0.37
CLN3-255ENST00000637100 PKD1L2Q7Z442 2459 aa17.38■□□□□ 0.37
CLN3-255ENST00000637100 IGHV1OR15-9A0A0B4J2B8 117 aa17.38■□□□□ 0.37
CLN3-255ENST00000637100 HHLA1C9JL84 531 aa17.38■□□□□ 0.37
CLN3-255ENST00000637100 TRIM24O15164 1050 aa17.38■□□□□ 0.37
CLN3-255ENST00000637100 KLRC4O43908 158 aa17.38■□□□□ 0.37
CLN3-255ENST00000637100 RPN1P04843 607 aaKnown RBP17.38■□□□□ 0.37
CLN3-255ENST00000637100 CISD3P0C7P0 127 aa17.38■□□□□ 0.37
CLN3-255ENST00000637100 SPINK2P20155 84 aa17.38■□□□□ 0.37
CLN3-255ENST00000637100 IFRD2Q12894 506 aaPredicted RBP17.38■□□□□ 0.37
CLN3-255ENST00000637100 ZNF699Q32M78 642 aa17.38■□□□□ 0.37
CLN3-255ENST00000637100 RABEPKQ7Z6M1 372 aa17.38■□□□□ 0.37
CLN3-255ENST00000637100 METTL3Q86U44 580 aaKnown RBP17.38■□□□□ 0.37
CLN3-255ENST00000637100 NAT16Q8N8M0 369 aa17.38■□□□□ 0.37
CLN3-255ENST00000637100 ZNF419Q96HQ0 510 aaPredicted RBP17.38■□□□□ 0.37
CLN3-255ENST00000637100 SLC32A1Q9H598 525 aa17.38■□□□□ 0.37
CLN3-255ENST00000637100 SLC39A2Q9NP94 309 aa17.38■□□□□ 0.37
CLN3-255ENST00000637100 CALCOCO1Q9P1Z2 691 aa17.38■□□□□ 0.37
CLN3-255ENST00000637100 BCCIPQ9P287 314 aaKnown RBP eCLIP17.38■□□□□ 0.37
CLN3-255ENST00000637100 MSRB2Q9Y3D2 182 aa17.38■□□□□ 0.37
CLN3-255ENST00000637100 ZFYVE26Q68DK2 2539 aa17.37■□□□□ 0.37
CLN3-255ENST00000637100 A0A1W2PQD8 194 aa17.37■□□□□ 0.37
CLN3-255ENST00000637100 PRRT4C9JH25 899 aa17.37■□□□□ 0.37
CLN3-255ENST00000637100 GFRA2O00451 464 aa17.37■□□□□ 0.37
CLN3-255ENST00000637100 IKBKBO14920 756 aa17.37■□□□□ 0.37
CLN3-255ENST00000637100 POLR2DO15514 142 aaKnown RBP17.37■□□□□ 0.37
CLN3-255ENST00000637100 TLR5O60602 858 aa17.37■□□□□ 0.37
CLN3-255ENST00000637100 EXOC3O60645 756 aa17.37■□□□□ 0.37
CLN3-255ENST00000637100 ZNF217O75362 1048 aa17.37■□□□□ 0.37
CLN3-255ENST00000637100 GJB3O75712 270 aa17.37■□□□□ 0.37
CLN3-255ENST00000637100 AP1G2O75843 785 aa17.37■□□□□ 0.37
CLN3-255ENST00000637100 ASS1P00966 412 aaKnown RBP17.37■□□□□ 0.37
CLN3-255ENST00000637100 HOXB2P14652 356 aa17.37■□□□□ 0.37
CLN3-255ENST00000637100 CASP1P29466 404 aa17.37■□□□□ 0.37
CLN3-255ENST00000637100 ZNF33AQ06730 810 aa17.37■□□□□ 0.37
CLN3-255ENST00000637100 SGSM1Q2NKQ1 1148 aa17.37■□□□□ 0.37
CLN3-255ENST00000637100 UAP1L1Q3KQV9 507 aa17.37■□□□□ 0.37
CLN3-255ENST00000637100 C10orf76Q5T2E6 689 aa17.37■□□□□ 0.37
CLN3-255ENST00000637100 Q6ZNB5 142 aa17.37■□□□□ 0.37
CLN3-255ENST00000637100 ACOT1Q86TX2 421 aa17.37■□□□□ 0.37
CLN3-255ENST00000637100 TTC30AQ86WT1 665 aa17.37■□□□□ 0.37
CLN3-255ENST00000637100 SLC41A1Q8IVJ1 513 aa17.37■□□□□ 0.37
CLN3-255ENST00000637100 TMC2Q8TDI7 906 aa17.37■□□□□ 0.37
CLN3-255ENST00000637100 HNRNPABQ99729 332 aaKnown RBP17.37■□□□□ 0.37
CLN3-255ENST00000637100 KCTD10Q9H3F6 313 aa17.37■□□□□ 0.37
CLN3-255ENST00000637100 PNPLA8Q9NP80 782 aa17.37■□□□□ 0.37
CLN3-255ENST00000637100 DNAAF2Q9NVR5 837 aaKnown RBP17.37■□□□□ 0.37
CLN3-255ENST00000637100 OSER1Q9NX31 292 aa17.37■□□□□ 0.37
CLN3-255ENST00000637100 WDR35Q9P2L0 1181 aa17.37■□□□□ 0.37
CLN3-255ENST00000637100 SCML2Q9UQR0 700 aa17.37■□□□□ 0.37
CLN3-255ENST00000637100 DMXL2Q8TDJ6 3036 aa17.37■□□□□ 0.37
CLN3-255ENST00000637100 PHACTR2O75167 634 aa17.36■□□□□ 0.37
CLN3-255ENST00000637100 TBX18O95935 607 aa17.36■□□□□ 0.37
CLN3-255ENST00000637100 C7P10643 843 aa17.36■□□□□ 0.37
CLN3-255ENST00000637100 CD59P13987 128 aa17.36■□□□□ 0.37
CLN3-255ENST00000637100 INCA1Q0VD86 236 aa17.36■□□□□ 0.37
CLN3-255ENST00000637100 CUL4BQ13620 913 aa17.36■□□□□ 0.37
CLN3-255ENST00000637100 ENPP2Q13822 863 aa17.36■□□□□ 0.37
CLN3-255ENST00000637100 COL9A2Q14055 689 aaPredicted RBP17.36■□□□□ 0.37
CLN3-255ENST00000637100 C1orf220Q5T0J3 134 aa17.36■□□□□ 0.37
CLN3-255ENST00000637100 RESP18Q5W5W9 173 aa17.36■□□□□ 0.37
CLN3-255ENST00000637100 EGFLAMQ63HQ2 1017 aa17.36■□□□□ 0.37
CLN3-255ENST00000637100 GRAMD4Q6IC98 578 aa17.36■□□□□ 0.37
CLN3-255ENST00000637100 ARMCX6Q7L4S7 300 aa17.36■□□□□ 0.37
CLN3-255ENST00000637100 IPO4Q8TEX9 1081 aaKnown RBP17.36■□□□□ 0.37
CLN3-255ENST00000637100 ACOX2Q99424 681 aa17.36■□□□□ 0.37
CLN3-255ENST00000637100 BACH2Q9BYV9 841 aa17.36■□□□□ 0.37
CLN3-255ENST00000637100 BLZF1Q9H2G9 400 aa17.36■□□□□ 0.37
CLN3-255ENST00000637100 TLR8Q9NR97 1041 aaKnown RBP17.36■□□□□ 0.37
CLN3-255ENST00000637100 KRT82Q9NSB4 513 aa17.36■□□□□ 0.37
CLN3-255ENST00000637100 SRRM3A6NNA2 597 aaPredicted RBP17.35■□□□□ 0.37
CLN3-255ENST00000637100 H0Y626 953 aa17.35■□□□□ 0.37
CLN3-255ENST00000637100 PDXKO00764 312 aa17.35■□□□□ 0.37
CLN3-255ENST00000637100 ARHGAP33O14559 1287 aa17.35■□□□□ 0.37
CLN3-255ENST00000637100 TRIM16O95361 564 aa17.35■□□□□ 0.37
CLN3-255ENST00000637100 PDIA4P13667 645 aaKnown RBP17.35■□□□□ 0.37
CLN3-255ENST00000637100 CCDC130P13994 396 aa17.35■□□□□ 0.37
CLN3-255ENST00000637100 TYRP14679 529 aa17.35■□□□□ 0.37
CLN3-255ENST00000637100 NDUFV2P19404 249 aa17.35■□□□□ 0.37
CLN3-255ENST00000637100 ATP5C1P36542 298 aaKnown RBP17.35■□□□□ 0.37
CLN3-255ENST00000637100 ASPAP45381 313 aa17.35■□□□□ 0.37
CLN3-255ENST00000637100 NDST1P52848 882 aa17.35■□□□□ 0.37
CLN3-255ENST00000637100 DLG4P78352 724 aa17.35■□□□□ 0.37
CLN3-255ENST00000637100 RPL6Q02878 288 aaKnown RBP17.35■□□□□ 0.37
CLN3-255ENST00000637100 GFPT1Q06210 699 aaPredicted RBP17.35■□□□□ 0.37
CLN3-255ENST00000637100 STK4Q13043 487 aa17.35■□□□□ 0.37
CLN3-255ENST00000637100 SLC14A1Q13336 389 aa17.35■□□□□ 0.37
CLN3-255ENST00000637100 BIRC3Q13489 604 aa17.35■□□□□ 0.37
CLN3-255ENST00000637100 HNRNPDQ14103 355 aaKnown RBP17.35■□□□□ 0.37
CLN3-255ENST00000637100 ANO4Q32M45 955 aa17.35■□□□□ 0.37
CLN3-255ENST00000637100 KIAA1211LQ6NV74 962 aa17.35■□□□□ 0.37
CLN3-255ENST00000637100 CLEC20AQ6ZU45 233 aa17.35■□□□□ 0.37
CLN3-255ENST00000637100 SV2AQ7L0J3 742 aa17.35■□□□□ 0.37
CLN3-255ENST00000637100 PGBD3Q8N328 593 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms