RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 DAB2IPQ5VWQ8 1189 aa17.07■□□□□ 0.32
CLN3-246ENST00000636228 ATL3Q6DD88 541 aa17.07■□□□□ 0.32
CLN3-246ENST00000636228 TPGS1Q6ZTW0 290 aa17.07■□□□□ 0.32
CLN3-246ENST00000636228 TMC2Q8TDI7 906 aa17.07■□□□□ 0.32
CLN3-246ENST00000636228 ACOX2Q99424 681 aa17.07■□□□□ 0.32
CLN3-246ENST00000636228 KLF16Q9BXK1 252 aaPredicted RBP17.07■□□□□ 0.32
CLN3-246ENST00000636228 APOBEC3GQ9HC16 384 aaKnown RBP17.07■□□□□ 0.32
CLN3-246ENST00000636228 CSNK1G1Q9HCP0 422 aa17.07■□□□□ 0.32
CLN3-246ENST00000636228 TMEM9BQ9NQ34 198 aa17.07■□□□□ 0.32
CLN3-246ENST00000636228 ZFHX4Q86UP3 3567 aa17.07■□□□□ 0.32
CLN3-246ENST00000636228 HELZP42694 1942 aaKnown RBP17.06■□□□□ 0.32
CLN3-246ENST00000636228 HHLA1C9JL84 531 aa17.06■□□□□ 0.32
CLN3-246ENST00000636228 NEDD8-MDP1E9PL57 170 aa17.06■□□□□ 0.32
CLN3-246ENST00000636228 FAM200BP0CF97 657 aa17.06■□□□□ 0.32
CLN3-246ENST00000636228 ACO1P21399 889 aaKnown RBP17.06■□□□□ 0.32
CLN3-246ENST00000636228 GCLMP48507 274 aa17.06■□□□□ 0.32
CLN3-246ENST00000636228 VAMP7P51809 220 aa17.06■□□□□ 0.32
CLN3-246ENST00000636228 HSF5Q4G112 596 aaPredicted RBP17.06■□□□□ 0.32
CLN3-246ENST00000636228 TRIM61Q5EBN2 209 aa17.06■□□□□ 0.32
CLN3-246ENST00000636228 HTR3DQ70Z44 454 aa17.06■□□□□ 0.32
CLN3-246ENST00000636228 UNC93AQ86WB7 457 aa17.06■□□□□ 0.32
CLN3-246ENST00000636228 SPACA7Q96KW9 195 aa17.06■□□□□ 0.32
CLN3-246ENST00000636228 FBXO44Q9H4M3 255 aa17.06■□□□□ 0.32
CLN3-246ENST00000636228 MMRN2Q9H8L6 949 aa17.06■□□□□ 0.32
CLN3-246ENST00000636228 NMUR1Q9HB89 426 aa17.06■□□□□ 0.32
CLN3-246ENST00000636228 FSCN3Q9NQT6 498 aa17.06■□□□□ 0.32
CLN3-246ENST00000636228 TLR8Q9NR97 1041 aaKnown RBP17.06■□□□□ 0.32
CLN3-246ENST00000636228 DNAJC17Q9NVM6 304 aaKnown RBP17.06■□□□□ 0.32
CLN3-246ENST00000636228 FRMD4BQ9Y2L6 1034 aa17.06■□□□□ 0.32
CLN3-246ENST00000636228 MYO16Q9Y6X6 1858 aa17.05■□□□□ 0.32
CLN3-246ENST00000636228 A0A1W2PQH9 124 aa17.05■□□□□ 0.32
CLN3-246ENST00000636228 CALUO43852 315 aaPredicted RBP17.05■□□□□ 0.32
CLN3-246ENST00000636228 KIF20AO95235 890 aa17.05■□□□□ 0.32
CLN3-246ENST00000636228 TOP3BO95985 862 aaKnown RBP17.05■□□□□ 0.32
CLN3-246ENST00000636228 GABRG2P18507 467 aa17.05■□□□□ 0.32
CLN3-246ENST00000636228 CD58P19256 250 aa17.05■□□□□ 0.32
CLN3-246ENST00000636228 SPINK2P20155 84 aa17.05■□□□□ 0.32
CLN3-246ENST00000636228 CMA1P23946 247 aa17.05■□□□□ 0.32
CLN3-246ENST00000636228 ATP5C1P36542 298 aaKnown RBP17.05■□□□□ 0.32
CLN3-246ENST00000636228 MAPK8P45983 427 aa17.05■□□□□ 0.32
CLN3-246ENST00000636228 SHC2P98077 582 aa17.05■□□□□ 0.32
CLN3-246ENST00000636228 PPP3CAQ08209 521 aa17.05■□□□□ 0.32
CLN3-246ENST00000636228 EGFLAMQ63HQ2 1017 aa17.05■□□□□ 0.32
CLN3-246ENST00000636228 CLEC20AQ6ZU45 233 aa17.05■□□□□ 0.32
CLN3-246ENST00000636228 TOGARAM2Q6ZUX3 1019 aa17.05■□□□□ 0.32
CLN3-246ENST00000636228 TERB1Q8NA31 727 aa17.05■□□□□ 0.32
CLN3-246ENST00000636228 TAS1R2Q8TE23 839 aa17.05■□□□□ 0.32
CLN3-246ENST00000636228 TMEM174Q8WUU8 243 aa17.05■□□□□ 0.32
CLN3-246ENST00000636228 TAF4BQ92750 862 aa17.05■□□□□ 0.32
CLN3-246ENST00000636228 BHMTQ93088 406 aa17.05■□□□□ 0.32
CLN3-246ENST00000636228 CYFIP2Q96F07 1278 aa17.05■□□□□ 0.32
CLN3-246ENST00000636228 HNRNPABQ99729 332 aaKnown RBP17.05■□□□□ 0.32
CLN3-246ENST00000636228 BBS2Q9BXC9 721 aa17.05■□□□□ 0.32
CLN3-246ENST00000636228 KIAA1549LQ6ZVL6 1849 aa17.05■□□□□ 0.32
CLN3-246ENST00000636228 KMT2BQ9UMN6 2715 aaPredicted RBP17.05■□□□□ 0.32
CLN3-246ENST00000636228 A0A1W2PQF6 199 aa17.04■□□□□ 0.32
CLN3-246ENST00000636228 IKBKBO14920 756 aa17.04■□□□□ 0.32
CLN3-246ENST00000636228 RARGP13631 454 aa17.04■□□□□ 0.32
CLN3-246ENST00000636228 HOXB2P14652 356 aa17.04■□□□□ 0.32
CLN3-246ENST00000636228 TYRP14679 529 aa17.04■□□□□ 0.32
CLN3-246ENST00000636228 ITPKAP23677 461 aa17.04■□□□□ 0.32
CLN3-246ENST00000636228 ZNF252P-AS1Q0IIN9 211 aa17.04■□□□□ 0.32
CLN3-246ENST00000636228 FOXC1Q12948 553 aa17.04■□□□□ 0.32
CLN3-246ENST00000636228 GRAMD4Q6IC98 578 aa17.04■□□□□ 0.32
CLN3-246ENST00000636228 ABCA7Q8IZY2 2146 aa17.04■□□□□ 0.32
CLN3-246ENST00000636228 P2RY11Q96G91 374 aa17.04■□□□□ 0.32
CLN3-246ENST00000636228 SLC6A17Q9H1V8 727 aa17.04■□□□□ 0.32
CLN3-246ENST00000636228 PLK2Q9NYY3 685 aa17.04■□□□□ 0.32
CLN3-246ENST00000636228 SCML2Q9UQR0 700 aa17.04■□□□□ 0.32
CLN3-246ENST00000636228 TRAF3IP3Q9Y228 551 aa17.04■□□□□ 0.32
CLN3-246ENST00000636228 HPSEQ9Y251 543 aa17.04■□□□□ 0.32
CLN3-246ENST00000636228 SPAG17Q6Q759 2223 aa17.03■□□□□ 0.32
CLN3-246ENST00000636228 PRRT4C9JH25 899 aa17.03■□□□□ 0.32
CLN3-246ENST00000636228 NR2F2P24468 414 aa17.03■□□□□ 0.32
CLN3-246ENST00000636228 NTSR1P30989 418 aa17.03■□□□□ 0.32
CLN3-246ENST00000636228 NDUFA8P51970 172 aa17.03■□□□□ 0.32
CLN3-246ENST00000636228 ZNF394Q53GI3 561 aa17.03■□□□□ 0.32
CLN3-246ENST00000636228 LYSMD4Q5XG99 296 aa17.03■□□□□ 0.32
CLN3-246ENST00000636228 KIAA1211LQ6NV74 962 aa17.03■□□□□ 0.32
CLN3-246ENST00000636228 TRMT11Q7Z4G4 463 aaKnown RBP17.03■□□□□ 0.32
CLN3-246ENST00000636228 SYT12Q8IV01 421 aa17.03■□□□□ 0.32
CLN3-246ENST00000636228 DEFB124Q8NES8 71 aa17.03■□□□□ 0.32
CLN3-246ENST00000636228 SPATA32Q96LK8 384 aa17.03■□□□□ 0.32
CLN3-246ENST00000636228 DUSP9Q99956 384 aaKnown RBP17.03■□□□□ 0.32
CLN3-246ENST00000636228 NT5C1AQ9BXI3 368 aa17.03■□□□□ 0.32
CLN3-246ENST00000636228 NUSAP1Q9BXS6 441 aaKnown RBP17.03■□□□□ 0.32
CLN3-246ENST00000636228 CYLDQ9NQC7 956 aa17.03■□□□□ 0.32
CLN3-246ENST00000636228 CALCOCO1Q9P1Z2 691 aa17.03■□□□□ 0.32
CLN3-246ENST00000636228 ZDHHC9Q9Y397 364 aa17.03■□□□□ 0.32
CLN3-246ENST00000636228 RAD54BQ9Y620 910 aa17.03■□□□□ 0.32
CLN3-246ENST00000636228 CACNA1BQ00975 2339 aa17.02■□□□□ 0.32
CLN3-246ENST00000636228 LAMA1P25391 3075 aa17.02■□□□□ 0.32
CLN3-246ENST00000636228 WASH3PC4AMC7 463 aa17.02■□□□□ 0.32
CLN3-246ENST00000636228 CFIP05156 583 aa17.02■□□□□ 0.32
CLN3-246ENST00000636228 ENGP17813 658 aa17.02■□□□□ 0.32
CLN3-246ENST00000636228 SYKP43405 635 aa17.02■□□□□ 0.32
CLN3-246ENST00000636228 RPL6Q02878 288 aaKnown RBP17.02■□□□□ 0.32
CLN3-246ENST00000636228 INCA1Q0VD86 236 aa17.02■□□□□ 0.32
CLN3-246ENST00000636228 BYSLQ13895 437 aaKnown RBP17.02■□□□□ 0.32
CLN3-246ENST00000636228 PREPLQ4J6C6 727 aaPredicted RBP17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms