RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 KLF8O95600 359 aaPredicted RBP12.57□□□□□ -0.4
UPF3B-204ENST00000619445 CCDC130P13994 396 aa12.57□□□□□ -0.4
UPF3B-204ENST00000619445 TIE1P35590 1138 aa12.57□□□□□ -0.4
UPF3B-204ENST00000619445 KIR2DL1P43626 348 aaPredicted RBP12.57□□□□□ -0.4
UPF3B-204ENST00000619445 PLA2G4AP47712 749 aa12.57□□□□□ -0.4
UPF3B-204ENST00000619445 NDUFA8P51970 172 aa12.57□□□□□ -0.4
UPF3B-204ENST00000619445 MCCD1P59942 119 aaPredicted RBP12.57□□□□□ -0.4
UPF3B-204ENST00000619445 ADAM9Q13443 819 aa12.57□□□□□ -0.4
UPF3B-204ENST00000619445 ANO4Q32M45 955 aa12.57□□□□□ -0.4
UPF3B-204ENST00000619445 KRT39Q6A163 491 aa12.57□□□□□ -0.4
UPF3B-204ENST00000619445 SDE2Q6IQ49 451 aa12.57□□□□□ -0.4
UPF3B-204ENST00000619445 KRBA2Q6ZNG9 492 aa12.57□□□□□ -0.4
UPF3B-204ENST00000619445 ARHGAP18Q8N392 663 aa12.57□□□□□ -0.4
UPF3B-204ENST00000619445 CCDC33Q8N5R6 958 aa12.57□□□□□ -0.4
UPF3B-204ENST00000619445 ALLCQ8N6M5 410 aa12.57□□□□□ -0.4
UPF3B-204ENST00000619445 TERB1Q8NA31 727 aa12.57□□□□□ -0.4
UPF3B-204ENST00000619445 TXNDC5Q8NBS9 432 aaKnown RBP12.57□□□□□ -0.4
UPF3B-204ENST00000619445 ZMIZ2Q8NF64 920 aa12.57□□□□□ -0.4
UPF3B-204ENST00000619445 MDGA1Q8NFP4 955 aa12.57□□□□□ -0.4
UPF3B-204ENST00000619445 CYFIP2Q96F07 1278 aa12.57□□□□□ -0.4
UPF3B-204ENST00000619445 LSM14BQ9BX40 385 aaKnown RBP12.57□□□□□ -0.4
UPF3B-204ENST00000619445 FAM49BQ9NUQ9 324 aa12.57□□□□□ -0.4
UPF3B-204ENST00000619445 MARK1Q9P0L2 795 aa12.57□□□□□ -0.4
UPF3B-204ENST00000619445 DNMT3LQ9UJW3 386 aa12.57□□□□□ -0.4
UPF3B-204ENST00000619445 STARD13Q9Y3M8 1113 aa12.57□□□□□ -0.4
UPF3B-204ENST00000619445 CILPO75339 1184 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 EPB41P11171 864 aaKnown RBP12.56□□□□□ -0.4
UPF3B-204ENST00000619445 RALAP11233 206 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 HOXC13P31276 330 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 P2RY2P41231 377 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 SLC6A11P48066 632 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 GCLMP48507 274 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 KDSRQ06136 332 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 LMAN2Q12907 356 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 GRAMD4Q6IC98 578 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 SLC36A4Q6YBV0 504 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 CLEC20AQ6ZU45 233 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 CCDC186Q7Z3E2 898 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 RABEPKQ7Z6M1 372 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 BBS7Q8IWZ6 715 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 ZNF513Q8N8E2 541 aaPredicted RBP12.56□□□□□ -0.4
UPF3B-204ENST00000619445 C12orf29Q8N999 325 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 SPRYD3Q8NCJ5 442 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 EDEM2Q9BV94 578 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 KLF16Q9BXK1 252 aaPredicted RBP12.56□□□□□ -0.4
UPF3B-204ENST00000619445 TPSD1Q9BZJ3 242 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 POLR3BQ9NW08 1133 aaPredicted RBP12.56□□□□□ -0.4
UPF3B-204ENST00000619445 CLIC5Q9NZA1 410 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 EVLQ9UI08 416 aaPredicted RBP12.56□□□□□ -0.4
UPF3B-204ENST00000619445 SGK1O00141 431 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 DCLK1O15075 740 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 NPC1O15118 1278 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 CETN3O15182 167 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 CACNG3O60359 315 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 ZNF202O95125 648 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 ACO1P21399 889 aaKnown RBP12.56□□□□□ -0.4
UPF3B-204ENST00000619445 ADORA2BP29275 332 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 NTSR1P30989 418 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 CHKAP35790 457 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 MXI1P50539 228 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 KIF11P52732 1056 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 COG7P83436 770 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 CCDC6Q16204 474 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 C1orf220Q5T0J3 134 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 C10orf76Q5T2E6 689 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 SPOPLQ6IQ16 392 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 TMEM92Q6UXU6 159 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 C12orf40Q86WS4 652 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 TTC30AQ86WT1 665 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 PGBD3Q8N328 593 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 PHTF2Q8N3S3 785 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 FBXL13Q8NEE6 735 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 TAS1R2Q8TE23 839 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 BBS2Q9BXC9 721 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 DUSP16Q9BY84 665 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 UBXN6Q9BZV1 441 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 DCLK3Q9C098 648 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 TMEM9BQ9NQ34 198 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.56□□□□□ -0.4
UPF3B-204ENST00000619445 HOOK1Q9UJC3 728 aaKnown RBP12.56□□□□□ -0.4
UPF3B-204ENST00000619445 ANGPTL2Q9UKU9 493 aa12.56□□□□□ -0.4
UPF3B-204ENST00000619445 GFRA2O00451 464 aa12.55□□□□□ -0.4
UPF3B-204ENST00000619445 SCAMP3O14828 347 aaKnown RBP12.55□□□□□ -0.4
UPF3B-204ENST00000619445 AP5Z1O43299 807 aa12.55□□□□□ -0.4
UPF3B-204ENST00000619445 ZNF217O75362 1048 aa12.55□□□□□ -0.4
UPF3B-204ENST00000619445 BEST1O76090 585 aa12.55□□□□□ -0.4
UPF3B-204ENST00000619445 TRIM49P0CI25 452 aa12.55□□□□□ -0.4
UPF3B-204ENST00000619445 TRIM49CP0CI26 452 aa12.55□□□□□ -0.4
UPF3B-204ENST00000619445 IRF1P10914 325 aa12.55□□□□□ -0.4
UPF3B-204ENST00000619445 RARGP13631 454 aa12.55□□□□□ -0.4
UPF3B-204ENST00000619445 DHPSP49366 369 aaPredicted RBP12.55□□□□□ -0.4
UPF3B-204ENST00000619445 ZNF132P52740 706 aa12.55□□□□□ -0.4
UPF3B-204ENST00000619445 YWHAEP62258 255 aaKnown RBP12.55□□□□□ -0.4
UPF3B-204ENST00000619445 SHC2P98077 582 aa12.55□□□□□ -0.4
UPF3B-204ENST00000619445 PPP3CAQ08209 521 aa12.55□□□□□ -0.4
UPF3B-204ENST00000619445 ZCWPW2Q504Y3 356 aa12.55□□□□□ -0.4
UPF3B-204ENST00000619445 C10orf120Q5SQS8 335 aa12.55□□□□□ -0.4
UPF3B-204ENST00000619445 TMEM25Q86YD3 366 aa12.55□□□□□ -0.4
UPF3B-204ENST00000619445 SYT12Q8IV01 421 aa12.55□□□□□ -0.4
UPF3B-204ENST00000619445 CEP76Q8TAP6 659 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms