RNA–Protein interactions for RNA: ENST00000602140.1

RPS28-204, Transcript of ribosomal protein S28, humanhuman

TSL 1 (best)

Gene RPS28, Length 912 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-204ENST00000602140 GPRIN1Q7Z2K8 1008 aa13.9□□□□□ -0.18
RPS28-204ENST00000602140 PGBD3Q8N328 593 aa13.9□□□□□ -0.18
RPS28-204ENST00000602140 ZNF513Q8N8E2 541 aaPredicted RBP13.9□□□□□ -0.18
RPS28-204ENST00000602140 TERB1Q8NA31 727 aa13.9□□□□□ -0.18
RPS28-204ENST00000602140 JAKMIP2Q96AA8 810 aa13.9□□□□□ -0.18
RPS28-204ENST00000602140 CYFIP2Q96F07 1278 aa13.9□□□□□ -0.18
RPS28-204ENST00000602140 SPATA32Q96LK8 384 aa13.9□□□□□ -0.18
RPS28-204ENST00000602140 TWNKQ96RR1 684 aa13.9□□□□□ -0.18
RPS28-204ENST00000602140 KLF16Q9BXK1 252 aaPredicted RBP13.9□□□□□ -0.18
RPS28-204ENST00000602140 MBD1Q9UIS9 605 aaPredicted RBP13.9□□□□□ -0.18
RPS28-204ENST00000602140 TRAF3IP3Q9Y228 551 aa13.9□□□□□ -0.18
RPS28-204ENST00000602140 CNOT1A5YKK6 2376 aaKnown RBP13.89□□□□□ -0.19
RPS28-204ENST00000602140 THADAQ6YHU6 1953 aa13.89□□□□□ -0.19
RPS28-204ENST00000602140 CACNA1BQ00975 2339 aa13.89□□□□□ -0.19
RPS28-204ENST00000602140 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.89□□□□□ -0.19
RPS28-204ENST00000602140 HHLA1C9JL84 531 aa13.89□□□□□ -0.19
RPS28-204ENST00000602140 MAPK13O15264 365 aa13.89□□□□□ -0.19
RPS28-204ENST00000602140 CYP26A1O43174 497 aa13.89□□□□□ -0.19
RPS28-204ENST00000602140 KIF20AO95235 890 aa13.89□□□□□ -0.19
RPS28-204ENST00000602140 PRR29P0C7W0 189 aa13.89□□□□□ -0.19
RPS28-204ENST00000602140 TRIM49P0CI25 452 aa13.89□□□□□ -0.19
RPS28-204ENST00000602140 TRIM49CP0CI26 452 aa13.89□□□□□ -0.19
RPS28-204ENST00000602140 TRIM21P19474 475 aaKnown RBP13.89□□□□□ -0.19
RPS28-204ENST00000602140 ACO1P21399 889 aaKnown RBP13.89□□□□□ -0.19
RPS28-204ENST00000602140 ATP5C1P36542 298 aaKnown RBP13.89□□□□□ -0.19
RPS28-204ENST00000602140 SYKP43405 635 aa13.89□□□□□ -0.19
RPS28-204ENST00000602140 GCLMP48507 274 aa13.89□□□□□ -0.19
RPS28-204ENST00000602140 INCA1Q0VD86 236 aa13.89□□□□□ -0.19
RPS28-204ENST00000602140 MAP7D1Q3KQU3 841 aa13.89□□□□□ -0.19
RPS28-204ENST00000602140 CLEC20AQ6ZU45 233 aa13.89□□□□□ -0.19
RPS28-204ENST00000602140 NUDT18Q6ZVK8 323 aa13.89□□□□□ -0.19
RPS28-204ENST00000602140 HTR3DQ70Z44 454 aa13.89□□□□□ -0.19
RPS28-204ENST00000602140 ARMCX6Q7L4S7 300 aa13.89□□□□□ -0.19
RPS28-204ENST00000602140 TRMT11Q7Z4G4 463 aaKnown RBP13.89□□□□□ -0.19
RPS28-204ENST00000602140 TMEFF1Q8IYR6 380 aa13.89□□□□□ -0.19
RPS28-204ENST00000602140 KCNV2Q8TDN2 545 aa13.89□□□□□ -0.19
RPS28-204ENST00000602140 CCDC47Q96A33 483 aaKnown RBP13.89□□□□□ -0.19
RPS28-204ENST00000602140 HNRNPABQ99729 332 aaKnown RBP13.89□□□□□ -0.19
RPS28-204ENST00000602140 NT5C1AQ9BXI3 368 aa13.89□□□□□ -0.19
RPS28-204ENST00000602140 IMPG2Q9BZV3 1241 aa13.89□□□□□ -0.19
RPS28-204ENST00000602140 APOBEC3GQ9HC16 384 aaKnown RBP13.89□□□□□ -0.19
RPS28-204ENST00000602140 TMEM9BQ9NQ34 198 aa13.89□□□□□ -0.19
RPS28-204ENST00000602140 CYLDQ9NQC7 956 aa13.89□□□□□ -0.19
RPS28-204ENST00000602140 DNAJC17Q9NVM6 304 aaKnown RBP13.89□□□□□ -0.19
RPS28-204ENST00000602140 OSER1Q9NX31 292 aa13.89□□□□□ -0.19
RPS28-204ENST00000602140 MAPK8IP1Q9UQF2 711 aa13.89□□□□□ -0.19
RPS28-204ENST00000602140 SCML2Q9UQR0 700 aa13.89□□□□□ -0.19
RPS28-204ENST00000602140 NUP205Q92621 2012 aa13.88□□□□□ -0.19
RPS28-204ENST00000602140 A0A1W2PQH9 124 aa13.88□□□□□ -0.19
RPS28-204ENST00000602140 NEDD8-MDP1E9PL57 170 aa13.88□□□□□ -0.19
RPS28-204ENST00000602140 CDX4O14627 284 aaPredicted RBP13.88□□□□□ -0.19
RPS28-204ENST00000602140 GIPC1O14908 333 aa13.88□□□□□ -0.19
RPS28-204ENST00000602140 GREM1O60565 184 aa13.88□□□□□ -0.19
RPS28-204ENST00000602140 RHOBTB3O94955 611 aa13.88□□□□□ -0.19
RPS28-204ENST00000602140 CD58P19256 250 aa13.88□□□□□ -0.19
RPS28-204ENST00000602140 NR2F2P24468 414 aa13.88□□□□□ -0.19
RPS28-204ENST00000602140 WASP42768 502 aa13.88□□□□□ -0.19
RPS28-204ENST00000602140 PTGER3P43115 390 aa13.88□□□□□ -0.19
RPS28-204ENST00000602140 NOVA1P51513 510 aaKnown RBP13.88□□□□□ -0.19
RPS28-204ENST00000602140 NDUFA8P51970 172 aa13.88□□□□□ -0.19
RPS28-204ENST00000602140 KRT85P78386 507 aa13.88□□□□□ -0.19
RPS28-204ENST00000602140 SHC2P98077 582 aa13.88□□□□□ -0.19
RPS28-204ENST00000602140 PPP3CAQ08209 521 aa13.88□□□□□ -0.19
RPS28-204ENST00000602140 GOLGA8FQ08AF8 430 aa13.88□□□□□ -0.19
RPS28-204ENST00000602140 GOLGA8DPQ0D2H9 430 aa13.88□□□□□ -0.19
RPS28-204ENST00000602140 BYSLQ13895 437 aaKnown RBP13.88□□□□□ -0.19
RPS28-204ENST00000602140 GRAMD4Q6IC98 578 aa13.88□□□□□ -0.19
RPS28-204ENST00000602140 TPGS1Q6ZTW0 290 aa13.88□□□□□ -0.19
RPS28-204ENST00000602140 INTS8Q75QN2 995 aaKnown RBP13.88□□□□□ -0.19
RPS28-204ENST00000602140 MIB1Q86YT6 1006 aa13.88□□□□□ -0.19
RPS28-204ENST00000602140 FAM186BQ8IYM0 893 aa13.88□□□□□ -0.19
RPS28-204ENST00000602140 TAS1R2Q8TE23 839 aa13.88□□□□□ -0.19
RPS28-204ENST00000602140 BBS2Q9BXC9 721 aa13.88□□□□□ -0.19
RPS28-204ENST00000602140 MMRN2Q9H8L6 949 aa13.88□□□□□ -0.19
RPS28-204ENST00000602140 CYP3A43Q9HB55 503 aa13.88□□□□□ -0.19
RPS28-204ENST00000602140 NMUR1Q9HB89 426 aa13.88□□□□□ -0.19
RPS28-204ENST00000602140 LSM7Q9UK45 103 aaKnown RBP13.88□□□□□ -0.19
RPS28-204ENST00000602140 NUDT5Q9UKK9 219 aa13.88□□□□□ -0.19
RPS28-204ENST00000602140 HCN2Q9UL51 889 aa13.88□□□□□ -0.19
RPS28-204ENST00000602140 MDM4O15151 490 aa13.87□□□□□ -0.19
RPS28-204ENST00000602140 CACNG3O60359 315 aa13.87□□□□□ -0.19
RPS28-204ENST00000602140 CILPO75339 1184 aa13.87□□□□□ -0.19
RPS28-204ENST00000602140 RARGP13631 454 aa13.87□□□□□ -0.19
RPS28-204ENST00000602140 KRT13P13646 458 aa13.87□□□□□ -0.19
RPS28-204ENST00000602140 HOXB2P14652 356 aa13.87□□□□□ -0.19
RPS28-204ENST00000602140 TYRP14679 529 aa13.87□□□□□ -0.19
RPS28-204ENST00000602140 GABRG2P18507 467 aa13.87□□□□□ -0.19
RPS28-204ENST00000602140 NTSR1P30989 418 aa13.87□□□□□ -0.19
RPS28-204ENST00000602140 NFIL3Q16649 462 aa13.87□□□□□ -0.19
RPS28-204ENST00000602140 TRIM61Q5EBN2 209 aa13.87□□□□□ -0.19
RPS28-204ENST00000602140 SH3PXD2AQ5TCZ1 1133 aa13.87□□□□□ -0.19
RPS28-204ENST00000602140 EGFLAMQ63HQ2 1017 aa13.87□□□□□ -0.19
RPS28-204ENST00000602140 SYT12Q8IV01 421 aa13.87□□□□□ -0.19
RPS28-204ENST00000602140 XPO6Q96QU8 1125 aaKnown RBP13.87□□□□□ -0.19
RPS28-204ENST00000602140 NUSAP1Q9BXS6 441 aaKnown RBP13.87□□□□□ -0.19
RPS28-204ENST00000602140 NIF3L1Q9GZT8 377 aa13.87□□□□□ -0.19
RPS28-204ENST00000602140 PNPLA8Q9NP80 782 aa13.87□□□□□ -0.19
RPS28-204ENST00000602140 TMEM74BQ9NUR3 256 aa13.87□□□□□ -0.19
RPS28-204ENST00000602140 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.87□□□□□ -0.19
RPS28-204ENST00000602140 WDR35Q9P2L0 1181 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms