RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 CDH9Q9ULB4 789 aa9.26□□□□□ -0.93
TRIM28-214ENST00000600840 MAGED2Q9UNF1 606 aaPredicted RBP9.26□□□□□ -0.93
TRIM28-214ENST00000600840 MRPS17Q9Y2R5 130 aaKnown RBP9.26□□□□□ -0.93
TRIM28-214ENST00000600840 R3HCC1Q9Y3T6 440 aaKnown RBP9.26□□□□□ -0.93
TRIM28-214ENST00000600840 PCDHB5Q9Y5E4 795 aa9.26□□□□□ -0.93
TRIM28-214ENST00000600840 EML5Q05BV3 1969 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 ANTXRLA6NF34 631 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 SRRM3A6NNA2 597 aaPredicted RBP9.25□□□□□ -0.93
TRIM28-214ENST00000600840 SOBPA7XYQ1 873 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 A8MXQ7 604 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 F8VZ95 297 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 K7ESF4 209 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 DPYSL4O14531 572 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 GIPC1O14908 333 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 AXIN1O15169 862 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 CALCAP01258 141 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 PAEPP09466 180 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 ARSAP15289 507 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 CD58P19256 250 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 WEE1P30291 646 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 CDC25BP30305 580 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 CCR3P51677 355 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 KPNA1P52294 538 aaPredicted RBP9.25□□□□□ -0.93
TRIM28-214ENST00000600840 LIMK1P53667 647 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 PSMC1P62191 440 aaKnown RBP9.25□□□□□ -0.93
TRIM28-214ENST00000600840 FOXC1Q12948 553 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 VEPH1Q14D04 833 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 ARHGAP44Q17R89 818 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 PKDCCQ504Y2 493 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 ARHGAP29Q52LW3 1261 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 ARHGAP15Q53QZ3 475 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 STPG1Q5TH74 334 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 ARHGAP17Q68EM7 881 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 PSAPL1Q6NUJ1 521 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 WDR59Q6PJI9 974 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 MAMSTRQ6ZN01 415 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 ACOT1Q86TX2 421 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 CMTM8Q8IZV2 173 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 FUKQ8N0W3 1084 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 TTC39CQ8N584 583 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 C12orf29Q8N999 325 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 KDF1Q8NAX2 398 aaPredicted RBP9.25□□□□□ -0.93
TRIM28-214ENST00000600840 CCDC150Q8NCX0 1101 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 NEK11Q8NG66 645 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 OR6B3Q8NGW1 331 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 C2orf15Q8WU43 125 aaKnown RBP9.25□□□□□ -0.93
TRIM28-214ENST00000600840 E2F7Q96AV8 911 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 TMEM176AQ96HP8 235 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 PDLIM2Q96JY6 352 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 FAM83CQ9BQN1 747 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 NUP58Q9BVL2 599 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 B3GNT5Q9BYG0 378 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 ARRDC1-AS1Q9H2J1 176 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 SNX25Q9H3E2 840 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 EBF3Q9H4W6 596 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 FBRSL1Q9HCM7 1045 aaKnown RBP9.25□□□□□ -0.93
TRIM28-214ENST00000600840 NLRC4Q9NPP4 1024 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 TMEM30AQ9NV96 361 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 OBP2AQ9NY56 170 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 MYO6Q9UM54 1294 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 LHX6Q9UPM6 363 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 MYO16Q9Y6X6 1858 aa9.25□□□□□ -0.93
TRIM28-214ENST00000600840 CNOT1A5YKK6 2376 aaKnown RBP9.24□□□□□ -0.93
TRIM28-214ENST00000600840 C2orf78A6NCI8 922 aa9.24□□□□□ -0.93
TRIM28-214ENST00000600840 ESPNB1AK53 854 aa9.24□□□□□ -0.93
TRIM28-214ENST00000600840 O00370 1275 aa9.24□□□□□ -0.93
TRIM28-214ENST00000600840 CYP26A1O43174 497 aa9.24□□□□□ -0.93
TRIM28-214ENST00000600840 GABBR2O75899 941 aa9.24□□□□□ -0.93
TRIM28-214ENST00000600840 FGF19O95750 216 aa9.24□□□□□ -0.93
TRIM28-214ENST00000600840 CHRNB2P17787 502 aa9.24□□□□□ -0.93
TRIM28-214ENST00000600840 FECHP22830 423 aa9.24□□□□□ -0.93
TRIM28-214ENST00000600840 PCSK1P29120 753 aa9.24□□□□□ -0.93
TRIM28-214ENST00000600840 CDC25CP30307 473 aa9.24□□□□□ -0.93
TRIM28-214ENST00000600840 CASP14P31944 242 aa9.24□□□□□ -0.93
TRIM28-214ENST00000600840 SOX5P35711 763 aa9.24□□□□□ -0.93
TRIM28-214ENST00000600840 CXCL12P48061 93 aa9.24□□□□□ -0.93
TRIM28-214ENST00000600840 CACNA2D1P54289 1103 aa9.24□□□□□ -0.93
TRIM28-214ENST00000600840 MLLT6P55198 1093 aaPredicted RBP9.24□□□□□ -0.93
TRIM28-214ENST00000600840 USP46P62068 366 aa9.24□□□□□ -0.93
TRIM28-214ENST00000600840 ZXDBP98169 803 aa9.24□□□□□ -0.93
TRIM28-214ENST00000600840 TSPY1Q01534 308 aa9.24□□□□□ -0.93
TRIM28-214ENST00000600840 SMARCB1Q12824 385 aa9.24□□□□□ -0.93
TRIM28-214ENST00000600840 ORC1Q13415 861 aa9.24□□□□□ -0.93
TRIM28-214ENST00000600840 CCINQ13939 588 aa9.24□□□□□ -0.93
TRIM28-214ENST00000600840 TAF12Q16514 161 aa9.24□□□□□ -0.93
TRIM28-214ENST00000600840 ZNF394Q53GI3 561 aa9.24□□□□□ -0.93
TRIM28-214ENST00000600840 HGSNATQ68CP4 663 aa9.24□□□□□ -0.93
TRIM28-214ENST00000600840 TMEM270Q6UE05 265 aa9.24□□□□□ -0.93
TRIM28-214ENST00000600840 CEP68Q76N32 757 aa9.24□□□□□ -0.93
TRIM28-214ENST00000600840 SCN4BQ8IWT1 228 aa9.24□□□□□ -0.93
TRIM28-214ENST00000600840 WDTC1Q8N5D0 677 aa9.24□□□□□ -0.93
TRIM28-214ENST00000600840 TC2NQ8N9U0 490 aa9.24□□□□□ -0.93
TRIM28-214ENST00000600840 C12orf50Q8NA57 414 aaPredicted RBP9.24□□□□□ -0.93
TRIM28-214ENST00000600840 RBBP8NLQ8NC74 664 aaPredicted RBP9.24□□□□□ -0.93
TRIM28-214ENST00000600840 B3GALNT2Q8NCR0 500 aa9.24□□□□□ -0.93
TRIM28-214ENST00000600840 MYCBPAPQ8TBZ2 947 aa9.24□□□□□ -0.93
TRIM28-214ENST00000600840 SYN2Q92777 582 aaPredicted RBP9.24□□□□□ -0.93
TRIM28-214ENST00000600840 IQCDQ96DY2 449 aa9.24□□□□□ -0.93
TRIM28-214ENST00000600840 PCED1BQ96HM7 432 aa9.24□□□□□ -0.93
TRIM28-214ENST00000600840 DNAJC7Q99615 494 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms