RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 CYFIP2Q96F07 1278 aa18.57■□□□□ 0.56
SHKBP1-223ENST00000600552 EEF2KMTQ96G04 330 aa18.57■□□□□ 0.56
SHKBP1-223ENST00000600552 SPACA7Q96KW9 195 aa18.57■□□□□ 0.56
SHKBP1-223ENST00000600552 APOBEC3GQ9HC16 384 aaKnown RBP18.57■□□□□ 0.56
SHKBP1-223ENST00000600552 DNAJC17Q9NVM6 304 aaKnown RBP18.57■□□□□ 0.56
SHKBP1-223ENST00000600552 IL37Q9NZH6 218 aa18.57■□□□□ 0.56
SHKBP1-223ENST00000600552 HPSEQ9Y251 543 aa18.57■□□□□ 0.56
SHKBP1-223ENST00000600552 ACACBO00763 2458 aa18.57■□□□□ 0.56
SHKBP1-223ENST00000600552 CACNA1BQ00975 2339 aa18.56■□□□□ 0.56
SHKBP1-223ENST00000600552 A0A1W2PQH9 124 aa18.56■□□□□ 0.56
SHKBP1-223ENST00000600552 NEDD8-MDP1E9PL57 170 aa18.56■□□□□ 0.56
SHKBP1-223ENST00000600552 IKBKBO14920 756 aa18.56■□□□□ 0.56
SHKBP1-223ENST00000600552 ADAM23O75077 832 aa18.56■□□□□ 0.56
SHKBP1-223ENST00000600552 KRT37O76014 449 aa18.56■□□□□ 0.56
SHKBP1-223ENST00000600552 ZDHHC11BP0C7U3 371 aa18.56■□□□□ 0.56
SHKBP1-223ENST00000600552 ATP5C1P36542 298 aaKnown RBP18.56■□□□□ 0.56
SHKBP1-223ENST00000600552 EIF2DP41214 584 aaKnown RBP18.56■□□□□ 0.56
SHKBP1-223ENST00000600552 KIR2DL1P43626 348 aaPredicted RBP18.56■□□□□ 0.56
SHKBP1-223ENST00000600552 PPP3CAQ08209 521 aa18.56■□□□□ 0.56
SHKBP1-223ENST00000600552 SNX30Q5VWJ9 437 aa18.56■□□□□ 0.56
SHKBP1-223ENST00000600552 GRAMD4Q6IC98 578 aa18.56■□□□□ 0.56
SHKBP1-223ENST00000600552 PSAPL1Q6NUJ1 521 aa18.56■□□□□ 0.56
SHKBP1-223ENST00000600552 LPCAT2Q7L5N7 544 aa18.56■□□□□ 0.56
SHKBP1-223ENST00000600552 C11orf74Q86VG3 221 aa18.56■□□□□ 0.56
SHKBP1-223ENST00000600552 ZNF513Q8N8E2 541 aaPredicted RBP18.56■□□□□ 0.56
SHKBP1-223ENST00000600552 NT5C1AQ9BXI3 368 aa18.56■□□□□ 0.56
SHKBP1-223ENST00000600552 LSM7Q9UK45 103 aaKnown RBP18.56■□□□□ 0.56
SHKBP1-223ENST00000600552 ZDHHC9Q9Y397 364 aa18.56■□□□□ 0.56
SHKBP1-223ENST00000600552 TM4SF5O14894 197 aa18.55■□□□□ 0.56
SHKBP1-223ENST00000600552 KCNK5O95279 499 aa18.55■□□□□ 0.56
SHKBP1-223ENST00000600552 MYL1P05976 194 aa18.55■□□□□ 0.56
SHKBP1-223ENST00000600552 RARGP13631 454 aa18.55■□□□□ 0.56
SHKBP1-223ENST00000600552 RPL13P26373 211 aaKnown RBP18.55■□□□□ 0.56
SHKBP1-223ENST00000600552 TUBP50607 506 aa18.55■□□□□ 0.56
SHKBP1-223ENST00000600552 GOLGA8FQ08AF8 430 aa18.55■□□□□ 0.56
SHKBP1-223ENST00000600552 GOLGA8DPQ0D2H9 430 aa18.55■□□□□ 0.56
SHKBP1-223ENST00000600552 ADAM9Q13443 819 aa18.55■□□□□ 0.56
SHKBP1-223ENST00000600552 C10orf120Q5SQS8 335 aa18.55■□□□□ 0.56
SHKBP1-223ENST00000600552 CLEC20AQ6ZU45 233 aa18.55■□□□□ 0.56
SHKBP1-223ENST00000600552 NUDT18Q6ZVK8 323 aa18.55■□□□□ 0.56
SHKBP1-223ENST00000600552 PHTF2Q8N3S3 785 aa18.55■□□□□ 0.56
SHKBP1-223ENST00000600552 HEXIM2Q96MH2 286 aaKnown RBP18.55■□□□□ 0.56
SHKBP1-223ENST00000600552 HNRNPABQ99729 332 aaKnown RBP18.55■□□□□ 0.56
SHKBP1-223ENST00000600552 LSM14BQ9BX40 385 aaKnown RBP18.55■□□□□ 0.56
SHKBP1-223ENST00000600552 BBS2Q9BXC9 721 aa18.55■□□□□ 0.56
SHKBP1-223ENST00000600552 KLF16Q9BXK1 252 aaPredicted RBP18.55■□□□□ 0.56
SHKBP1-223ENST00000600552 NMUR1Q9HB89 426 aa18.55■□□□□ 0.56
SHKBP1-223ENST00000600552 CSNK1G1Q9HCP0 422 aa18.55■□□□□ 0.56
SHKBP1-223ENST00000600552 OSER1Q9NX31 292 aa18.55■□□□□ 0.56
SHKBP1-223ENST00000600552 NAGPAQ9UK23 515 aa18.55■□□□□ 0.56
SHKBP1-223ENST00000600552 TRAF3IP3Q9Y228 551 aa18.55■□□□□ 0.56
SHKBP1-223ENST00000600552 ATXN2Q99700 1313 aaKnown RBP18.54■□□□□ 0.56
SHKBP1-223ENST00000600552 LNP1A1A4G5 178 aa18.54■□□□□ 0.56
SHKBP1-223ENST00000600552 HOXC11O43248 304 aaPredicted RBP18.54■□□□□ 0.56
SHKBP1-223ENST00000600552 HMBSP08397 361 aa18.54■□□□□ 0.56
SHKBP1-223ENST00000600552 PSMC2P35998 433 aaKnown RBP18.54■□□□□ 0.56
SHKBP1-223ENST00000600552 NOVA1P51513 510 aaKnown RBP18.54■□□□□ 0.56
SHKBP1-223ENST00000600552 IRX4P78413 519 aa18.54■□□□□ 0.56
SHKBP1-223ENST00000600552 DPYDQ12882 1025 aa18.54■□□□□ 0.56
SHKBP1-223ENST00000600552 PREPLQ4J6C6 727 aaPredicted RBP18.54■□□□□ 0.56
SHKBP1-223ENST00000600552 DAB2IPQ5VWQ8 1189 aa18.54■□□□□ 0.56
SHKBP1-223ENST00000600552 KRBA2Q6ZNG9 492 aa18.54■□□□□ 0.56
SHKBP1-223ENST00000600552 INTS8Q75QN2 995 aaKnown RBP18.54■□□□□ 0.56
SHKBP1-223ENST00000600552 MIB1Q86YT6 1006 aa18.54■□□□□ 0.56
SHKBP1-223ENST00000600552 ETFBKMTQ8IXQ9 262 aa18.54■□□□□ 0.56
SHKBP1-223ENST00000600552 SMYD4Q8IYR2 804 aaPredicted RBP18.54■□□□□ 0.56
SHKBP1-223ENST00000600552 XPO6Q96QU8 1125 aaKnown RBP18.54■□□□□ 0.56
SHKBP1-223ENST00000600552 NIF3L1Q9GZT8 377 aa18.54■□□□□ 0.56
SHKBP1-223ENST00000600552 GOLPH3LQ9H4A5 285 aa18.54■□□□□ 0.56
SHKBP1-223ENST00000600552 CYP3A43Q9HB55 503 aa18.54■□□□□ 0.56
SHKBP1-223ENST00000600552 GDPD2Q9HCC8 539 aa18.54■□□□□ 0.56
SHKBP1-223ENST00000600552 PLK2Q9NYY3 685 aa18.54■□□□□ 0.56
SHKBP1-223ENST00000600552 MBD1Q9UIS9 605 aaPredicted RBP18.54■□□□□ 0.56
SHKBP1-223ENST00000600552 SCML2Q9UQR0 700 aa18.54■□□□□ 0.56
SHKBP1-223ENST00000600552 A0A0A0MRY4 1105 aa18.53■□□□□ 0.56
SHKBP1-223ENST00000600552 FAM92AA1XBS5 289 aa18.53■□□□□ 0.56
SHKBP1-223ENST00000600552 GIPC1O14908 333 aa18.53■□□□□ 0.56
SHKBP1-223ENST00000600552 ZBTB24O43167 697 aaPredicted RBP18.53■□□□□ 0.56
SHKBP1-223ENST00000600552 RHOBTB3O94955 611 aa18.53■□□□□ 0.56
SHKBP1-223ENST00000600552 HOXB2P14652 356 aa18.53■□□□□ 0.56
SHKBP1-223ENST00000600552 TYRP14679 529 aa18.53■□□□□ 0.56
SHKBP1-223ENST00000600552 P2RY2P41231 377 aa18.53■□□□□ 0.56
SHKBP1-223ENST00000600552 PTGER3P43115 390 aa18.53■□□□□ 0.56
SHKBP1-223ENST00000600552 MAPK8P45983 427 aa18.53■□□□□ 0.56
SHKBP1-223ENST00000600552 ST3GAL2Q16842 350 aa18.53■□□□□ 0.56
SHKBP1-223ENST00000600552 HSF5Q4G112 596 aaPredicted RBP18.53■□□□□ 0.56
SHKBP1-223ENST00000600552 EGFLAMQ63HQ2 1017 aa18.53■□□□□ 0.56
SHKBP1-223ENST00000600552 SDE2Q6IQ49 451 aa18.53■□□□□ 0.56
SHKBP1-223ENST00000600552 HTR3DQ70Z44 454 aa18.53■□□□□ 0.56
SHKBP1-223ENST00000600552 TRMT11Q7Z4G4 463 aaKnown RBP18.53■□□□□ 0.56
SHKBP1-223ENST00000600552 TERB1Q8NA31 727 aa18.53■□□□□ 0.56
SHKBP1-223ENST00000600552 OLIG1Q8TAK6 271 aa18.53■□□□□ 0.56
SHKBP1-223ENST00000600552 ACOX2Q99424 681 aa18.53■□□□□ 0.56
SHKBP1-223ENST00000600552 DNAI2Q9GZS0 605 aa18.53■□□□□ 0.56
SHKBP1-223ENST00000600552 TMEM9BQ9NQ34 198 aa18.53■□□□□ 0.56
SHKBP1-223ENST00000600552 ANGPTL2Q9UKU9 493 aa18.53■□□□□ 0.56
SHKBP1-223ENST00000600552 HHLA1C9JL84 531 aa18.52■□□□□ 0.56
SHKBP1-223ENST00000600552 ZNF202O95125 648 aa18.52■□□□□ 0.56
SHKBP1-223ENST00000600552 INCA1Q0VD86 236 aa18.52■□□□□ 0.56
SHKBP1-223ENST00000600552 BYSLQ13895 437 aaKnown RBP18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms