RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 CLDN23Q96B33 292 aa17.02■□□□□ 0.32
LSM4-206ENST00000600289 CDK5RAP1Q96SZ6 601 aaKnown RBP17.02■□□□□ 0.32
LSM4-206ENST00000600289 FUCA2Q9BTY2 467 aa17.02■□□□□ 0.32
LSM4-206ENST00000600289 CCSER2Q9H7U1 834 aa17.02■□□□□ 0.32
LSM4-206ENST00000600289 GKN1Q9NS71 199 aa17.02■□□□□ 0.32
LSM4-206ENST00000600289 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.02■□□□□ 0.32
LSM4-206ENST00000600289 GTSE1Q9NYZ3 720 aa17.02■□□□□ 0.32
LSM4-206ENST00000600289 LIMA1Q9UHB6 759 aaKnown RBP17.02■□□□□ 0.32
LSM4-206ENST00000600289 BECN2A8MW95 431 aa17.01■□□□□ 0.31
LSM4-206ENST00000600289 SPECC1L-ADORA2AF8WAN1 911 aa17.01■□□□□ 0.31
LSM4-206ENST00000600289 ZZEF1O43149 2961 aa17.01■□□□□ 0.31
LSM4-206ENST00000600289 SP9P0CG40 484 aa17.01■□□□□ 0.31
LSM4-206ENST00000600289 MBL2P11226 248 aaPredicted RBP17.01■□□□□ 0.31
LSM4-206ENST00000600289 KRT5P13647 590 aa17.01■□□□□ 0.31
LSM4-206ENST00000600289 BRD2P25440 801 aaKnown RBP17.01■□□□□ 0.31
LSM4-206ENST00000600289 TARSP26639 723 aaKnown RBP17.01■□□□□ 0.31
LSM4-206ENST00000600289 CTHP32929 405 aa17.01■□□□□ 0.31
LSM4-206ENST00000600289 RPS9P46781 194 aaKnown RBP17.01■□□□□ 0.31
LSM4-206ENST00000600289 TNK2Q07912 1038 aa17.01■□□□□ 0.31
LSM4-206ENST00000600289 EML3Q32P44 896 aa17.01■□□□□ 0.31
LSM4-206ENST00000600289 ZC3H14Q6PJT7 736 aaKnown RBP17.01■□□□□ 0.31
LSM4-206ENST00000600289 SCD5Q86SK9 330 aa17.01■□□□□ 0.31
LSM4-206ENST00000600289 TADA2BQ86TJ2 420 aa17.01■□□□□ 0.31
LSM4-206ENST00000600289 FAM3CQ92520 227 aa17.01■□□□□ 0.31
LSM4-206ENST00000600289 ATP2A3Q93084 1043 aa17.01■□□□□ 0.31
LSM4-206ENST00000600289 HSD3B7Q9H2F3 369 aa17.01■□□□□ 0.31
LSM4-206ENST00000600289 NMUR1Q9HB89 426 aa17.01■□□□□ 0.31
LSM4-206ENST00000600289 PLCB1Q9NQ66 1216 aa17.01■□□□□ 0.31
LSM4-206ENST00000600289 OSER1Q9NX31 292 aa17.01■□□□□ 0.31
LSM4-206ENST00000600289 DUS2Q9NX74 493 aaKnown RBP17.01■□□□□ 0.31
LSM4-206ENST00000600289 TAB2Q9NYJ8 693 aa17.01■□□□□ 0.31
LSM4-206ENST00000600289 DAAM1Q9Y4D1 1078 aa17.01■□□□□ 0.31
LSM4-206ENST00000600289 A0A1W2PQH9 124 aa17■□□□□ 0.31
LSM4-206ENST00000600289 E2F8A0AVK6 867 aa17■□□□□ 0.31
LSM4-206ENST00000600289 LRRC10BA6NIK2 292 aa17■□□□□ 0.31
LSM4-206ENST00000600289 M0QYV0 167 aa17■□□□□ 0.31
LSM4-206ENST00000600289 TULP2O00295 520 aa17■□□□□ 0.31
LSM4-206ENST00000600289 STK25O00506 426 aa17■□□□□ 0.31
LSM4-206ENST00000600289 SLC9A3R1O14745 358 aaPredicted RBP17■□□□□ 0.31
LSM4-206ENST00000600289 NCAM2O15394 837 aa17■□□□□ 0.31
LSM4-206ENST00000600289 MED7O43513 233 aa17■□□□□ 0.31
LSM4-206ENST00000600289 ZBED1O96006 694 aa17■□□□□ 0.31
LSM4-206ENST00000600289 TPM2P07951 284 aa17■□□□□ 0.31
LSM4-206ENST00000600289 ATP5C1P36542 298 aaKnown RBP17■□□□□ 0.31
LSM4-206ENST00000600289 IFNAR2P48551 515 aa17■□□□□ 0.31
LSM4-206ENST00000600289 RPL34P49207 117 aaKnown RBP17■□□□□ 0.31
LSM4-206ENST00000600289 TKTL1P51854 596 aa17■□□□□ 0.31
LSM4-206ENST00000600289 KPNA1P52294 538 aaPredicted RBP17■□□□□ 0.31
LSM4-206ENST00000600289 APBA1Q02410 837 aa17■□□□□ 0.31
LSM4-206ENST00000600289 FZD5Q13467 585 aa17■□□□□ 0.31
LSM4-206ENST00000600289 ACAP1Q15027 740 aa17■□□□□ 0.31
LSM4-206ENST00000600289 ANO6Q4KMQ2 910 aa17■□□□□ 0.31
LSM4-206ENST00000600289 BHLHA9Q7RTU4 235 aa17■□□□□ 0.31
LSM4-206ENST00000600289 CPA6Q8N4T0 437 aa17■□□□□ 0.31
LSM4-206ENST00000600289 ANKRD20A12PQ8NF67 263 aa17■□□□□ 0.31
LSM4-206ENST00000600289 UBA3Q8TBC4 463 aa17■□□□□ 0.31
LSM4-206ENST00000600289 HSFY1Q96LI6 401 aa17■□□□□ 0.31
LSM4-206ENST00000600289 IER2Q9BTL4 223 aa17■□□□□ 0.31
LSM4-206ENST00000600289 NAA15Q9BXJ9 866 aaKnown RBP17■□□□□ 0.31
LSM4-206ENST00000600289 EBF3Q9H4W6 596 aa17■□□□□ 0.31
LSM4-206ENST00000600289 CNGB3Q9NQW8 809 aa17■□□□□ 0.31
LSM4-206ENST00000600289 DNAJC12Q9UKB3 198 aa17■□□□□ 0.31
LSM4-206ENST00000600289 AJAP1Q9UKB5 411 aaPredicted RBP17■□□□□ 0.31
LSM4-206ENST00000600289 DCDC2BA2VCK2 349 aa16.99■□□□□ 0.31
LSM4-206ENST00000600289 FAM170BA6NMN3 283 aa16.99■□□□□ 0.31
LSM4-206ENST00000600289 NFATC1O95644 943 aa16.99■□□□□ 0.31
LSM4-206ENST00000600289 RARGP13631 454 aa16.99■□□□□ 0.31
LSM4-206ENST00000600289 CD72P21854 359 aa16.99■□□□□ 0.31
LSM4-206ENST00000600289 SDHBP21912 280 aa16.99■□□□□ 0.31
LSM4-206ENST00000600289 GNA15P30679 374 aa16.99■□□□□ 0.31
LSM4-206ENST00000600289 AMPD2Q01433 879 aa16.99■□□□□ 0.31
LSM4-206ENST00000600289 ADIGQ0VDE8 80 aa16.99■□□□□ 0.31
LSM4-206ENST00000600289 UBXN2BQ14CS0 331 aa16.99■□□□□ 0.31
LSM4-206ENST00000600289 ARHGAP44Q17R89 818 aa16.99■□□□□ 0.31
LSM4-206ENST00000600289 KLHDC7AQ5VTJ3 777 aa16.99■□□□□ 0.31
LSM4-206ENST00000600289 TRIM68Q6AZZ1 485 aa16.99■□□□□ 0.31
LSM4-206ENST00000600289 APTXQ7Z2E3 356 aaKnown RBP16.99■□□□□ 0.31
LSM4-206ENST00000600289 STK32AQ8WU08 396 aa16.99■□□□□ 0.31
LSM4-206ENST00000600289 ZNF606Q8WXB4 792 aa16.99■□□□□ 0.31
LSM4-206ENST00000600289 SECISBP2LQ93073 1101 aaKnown RBP16.99■□□□□ 0.31
LSM4-206ENST00000600289 OTUB2Q96DC9 234 aa16.99■□□□□ 0.31
LSM4-206ENST00000600289 CHFRQ96EP1 664 aa16.99■□□□□ 0.31
LSM4-206ENST00000600289 KLF16Q9BXK1 252 aaPredicted RBP16.99■□□□□ 0.31
LSM4-206ENST00000600289 ULBP1Q9BZM6 244 aa16.99■□□□□ 0.31
LSM4-206ENST00000600289 ECT2Q9H8V3 914 aa16.99■□□□□ 0.31
LSM4-206ENST00000600289 LRRC4Q9HBW1 653 aa16.99■□□□□ 0.31
LSM4-206ENST00000600289 SMPD4Q9NXE4 827 aa16.99■□□□□ 0.31
LSM4-206ENST00000600289 CFAP97Q9P2B7 532 aa16.99■□□□□ 0.31
LSM4-206ENST00000600289 TBC1D14Q9P2M4 693 aa16.99■□□□□ 0.31
LSM4-206ENST00000600289 NAGPAQ9UK23 515 aa16.99■□□□□ 0.31
LSM4-206ENST00000600289 MTF2Q9Y483 593 aaPredicted RBP16.99■□□□□ 0.31
LSM4-206ENST00000600289 WNT6Q9Y6F9 365 aa16.99■□□□□ 0.31
LSM4-206ENST00000600289 F5P12259 2224 aa16.98■□□□□ 0.31
LSM4-206ENST00000600289 OTOL1A6NHN0 477 aaPredicted RBP16.98■□□□□ 0.31
LSM4-206ENST00000600289 RALAP11233 206 aa16.98■□□□□ 0.31
LSM4-206ENST00000600289 ARSAP15289 507 aa16.98■□□□□ 0.31
LSM4-206ENST00000600289 GPD2P43304 727 aa16.98■□□□□ 0.31
LSM4-206ENST00000600289 SOX9P48436 509 aa16.98■□□□□ 0.31
LSM4-206ENST00000600289 COPB1P53618 953 aaKnown RBP16.98■□□□□ 0.31
LSM4-206ENST00000600289 YWHAGP61981 247 aaKnown RBP eCLIP16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms