RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 FAM170AA1A519 330 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 OR6C75A6NL08 312 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 ANHXE9PGG2 379 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 C2CD2LO14523 706 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 GIPC1O14908 333 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 MED7O43513 233 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 GABBR2O75899 941 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 BEST1O76090 585 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 VNN2O95498 520 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 CTSAP10619 480 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 GZMAP12544 262 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 TDGF1P13385 188 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 CD72P21854 359 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 ADORA2BP29275 332 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 CDH5P33151 784 aaPredicted RBP9.96□□□□□ -0.82
TRIM28-208ENST00000597172 CYLC1P35663 651 aaPredicted RBP9.96□□□□□ -0.82
TRIM28-208ENST00000597172 RPS9P46781 194 aaKnown RBP9.96□□□□□ -0.82
TRIM28-208ENST00000597172 GLUD2P49448 558 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 CACNA2D1P54289 1103 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 NOMO3P69849 1222 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 MTAPQ13126 283 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 STILQ15468 1287 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 PSMD5Q16401 504 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 GOLGA7BQ2TAP0 167 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 COL28A1Q2UY09 1125 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 SLC39A12Q504Y0 691 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 CCDC122Q5T0U0 273 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 SLC8B1Q6J4K2 584 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 ACAD10Q6JQN1 1059 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 ZNF280DQ6N043 979 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 ALKBH5Q6P6C2 394 aaKnown RBP9.96□□□□□ -0.82
TRIM28-208ENST00000597172 GPR65Q8IYL9 337 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 ANKRD52Q8NB46 1076 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 CPA5Q8WXQ8 436 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 MYLPFQ96A32 169 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 NELL2Q99435 816 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 DESI2Q9BSY9 194 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 OXCT2Q9BYC2 517 aaPredicted RBP9.96□□□□□ -0.82
TRIM28-208ENST00000597172 RHOBTB2Q9BYZ6 727 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 ISCUQ9H1K1 167 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 DEF6Q9H4E7 631 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 RXFP1Q9HBX9 757 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 TMEM30AQ9NV96 361 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 PCDHA13Q9Y5I0 950 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 ADGRG1Q9Y653 693 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 CDY1Q9Y6F8 540 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 ABCA12Q86UK0 2595 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 FREM2Q5SZK8 3169 aa9.96□□□□□ -0.82
TRIM28-208ENST00000597172 RCCD1A6NED2 376 aa9.95□□□□□ -0.82
TRIM28-208ENST00000597172 TMCO5BA8MYB1 307 aa9.95□□□□□ -0.82
TRIM28-208ENST00000597172 TULP2O00295 520 aa9.95□□□□□ -0.82
TRIM28-208ENST00000597172 HRO43593 1189 aa9.95□□□□□ -0.82
TRIM28-208ENST00000597172 RTN2O75298 545 aa9.95□□□□□ -0.82
TRIM28-208ENST00000597172 FTLP02792 175 aaPredicted RBP9.95□□□□□ -0.82
TRIM28-208ENST00000597172 LAMP2P13473 410 aa9.95□□□□□ -0.82
TRIM28-208ENST00000597172 OR1D2P34982 312 aa9.95□□□□□ -0.82
TRIM28-208ENST00000597172 MAGEA1P43355 309 aa9.95□□□□□ -0.82
TRIM28-208ENST00000597172 TSPY1Q01534 308 aa9.95□□□□□ -0.82
TRIM28-208ENST00000597172 GPR17Q13304 367 aa9.95□□□□□ -0.82
TRIM28-208ENST00000597172 HTR4Q13639 388 aa9.95□□□□□ -0.82
TRIM28-208ENST00000597172 PPP2R5DQ14738 602 aa9.95□□□□□ -0.82
TRIM28-208ENST00000597172 NAA35Q5VZE5 725 aa9.95□□□□□ -0.82
TRIM28-208ENST00000597172 TRIM72Q6ZMU5 477 aa9.95□□□□□ -0.82
TRIM28-208ENST00000597172 RNF19BQ6ZMZ0 732 aa9.95□□□□□ -0.82
TRIM28-208ENST00000597172 VPS36Q86VN1 386 aa9.95□□□□□ -0.82
TRIM28-208ENST00000597172 DCP1BQ8IZD4 617 aaKnown RBP9.95□□□□□ -0.82
TRIM28-208ENST00000597172 ST13P5Q8NFI4 369 aaPredicted RBP9.95□□□□□ -0.82
TRIM28-208ENST00000597172 SLC35F5Q8WV83 523 aa9.95□□□□□ -0.82
TRIM28-208ENST00000597172 SMOQ99835 787 aa9.95□□□□□ -0.82
TRIM28-208ENST00000597172 PACSIN1Q9BY11 444 aa9.95□□□□□ -0.82
TRIM28-208ENST00000597172 DUSP16Q9BY84 665 aa9.95□□□□□ -0.82
TRIM28-208ENST00000597172 ZNF518BQ9C0D4 1074 aa9.95□□□□□ -0.82
TRIM28-208ENST00000597172 DNAI2Q9GZS0 605 aa9.95□□□□□ -0.82
TRIM28-208ENST00000597172 PDCL3Q9H2J4 239 aa9.95□□□□□ -0.82
TRIM28-208ENST00000597172 MRPL17Q9NRX2 175 aaKnown RBP9.95□□□□□ -0.82
TRIM28-208ENST00000597172 SEPT11Q9NVA2 429 aaKnown RBP9.95□□□□□ -0.82
TRIM28-208ENST00000597172 FNIP2Q9P278 1114 aa9.95□□□□□ -0.82
TRIM28-208ENST00000597172 STK39Q9UEW8 545 aa9.95□□□□□ -0.82
TRIM28-208ENST00000597172 TFR2Q9UP52 801 aa9.95□□□□□ -0.82
TRIM28-208ENST00000597172 IRAK3Q9Y616 596 aa9.95□□□□□ -0.82
TRIM28-208ENST00000597172 NUMBLQ9Y6R0 609 aa9.95□□□□□ -0.82
TRIM28-208ENST00000597172 CLUHO75153 1309 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 WDR27A2RRH5 827 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 M0QYV0 167 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 TEX28O15482 410 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 NRDCO43847 1150 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 ABLIM3O94929 683 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 LSM8O95777 96 aaKnown RBP9.94□□□□□ -0.82
TRIM28-208ENST00000597172 ABL1P00519 1130 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 URODP06132 367 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 ZNF806P0C7X5 589 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 BDNFP23560 247 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 CYP2F1P24903 491 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 TARSP26639 723 aaKnown RBP9.94□□□□□ -0.82
TRIM28-208ENST00000597172 RPL34P49207 117 aaKnown RBP9.94□□□□□ -0.82
TRIM28-208ENST00000597172 ARPP19P56211 112 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 ROR1Q01973 937 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 CENPCQ03188 943 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 PDE4CQ08493 712 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 PTP4A2Q12974 167 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms