RNA–Protein interactions for RNA: ENST00000597146.1

LIG1-214, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-214ENST00000597146 TOP6BLQ8N6T0 577 aa16.46■□□□□ 0.23
LIG1-214ENST00000597146 ZSWIM2Q8NEG5 633 aa16.46■□□□□ 0.23
LIG1-214ENST00000597146 CXorf38Q8TB03 319 aa16.46■□□□□ 0.23
LIG1-214ENST00000597146 OTUB2Q96DC9 234 aa16.46■□□□□ 0.23
LIG1-214ENST00000597146 INTS4Q96HW7 963 aaKnown RBP16.46■□□□□ 0.23
LIG1-214ENST00000597146 FIZ1Q96SL8 496 aa16.46■□□□□ 0.23
LIG1-214ENST00000597146 CLMPQ9H6B4 373 aa16.46■□□□□ 0.23
LIG1-214ENST00000597146 USP36Q9P275 1121 aaKnown RBP16.46■□□□□ 0.23
LIG1-214ENST00000597146 ODF2LQ9ULJ1 636 aa16.46■□□□□ 0.23
LIG1-214ENST00000597146 SH3BP1Q9Y3L3 701 aa16.46■□□□□ 0.23
LIG1-214ENST00000597146 NFE2L3Q9Y4A8 694 aa16.46■□□□□ 0.23
LIG1-214ENST00000597146 TEX51A0A1B0GUA7 166 aa16.45■□□□□ 0.22
LIG1-214ENST00000597146 COCHO43405 550 aa16.45■□□□□ 0.22
LIG1-214ENST00000597146 TRAK2O60296 914 aa16.45■□□□□ 0.22
LIG1-214ENST00000597146 IL18RAPO95256 599 aa16.45■□□□□ 0.22
LIG1-214ENST00000597146 KRT19P08727 400 aa16.45■□□□□ 0.22
LIG1-214ENST00000597146 IRF1P10914 325 aa16.45■□□□□ 0.22
LIG1-214ENST00000597146 CSNK1EP49674 416 aaKnown RBP16.45■□□□□ 0.22
LIG1-214ENST00000597146 ZNF131P52739 623 aa16.45■□□□□ 0.22
LIG1-214ENST00000597146 NOP14P78316 857 aaKnown RBP16.45■□□□□ 0.22
LIG1-214ENST00000597146 DHX8Q14562 1220 aaKnown RBP16.45■□□□□ 0.22
LIG1-214ENST00000597146 PREPLQ4J6C6 727 aaPredicted RBP16.45■□□□□ 0.22
LIG1-214ENST00000597146 TMEM119Q4V9L6 283 aa16.45■□□□□ 0.22
LIG1-214ENST00000597146 NUDT18Q6ZVK8 323 aa16.45■□□□□ 0.22
LIG1-214ENST00000597146 GPBP1Q86WP2 473 aa16.45■□□□□ 0.22
LIG1-214ENST00000597146 CACUL1Q86Y37 369 aa16.45■□□□□ 0.22
LIG1-214ENST00000597146 KBTBD7Q8WVZ9 684 aa16.45■□□□□ 0.22
LIG1-214ENST00000597146 ZHX3Q9H4I2 956 aa16.45■□□□□ 0.22
LIG1-214ENST00000597146 PARVGQ9HBI0 331 aa16.45■□□□□ 0.22
LIG1-214ENST00000597146 TMEM30AQ9NV96 361 aa16.45■□□□□ 0.22
LIG1-214ENST00000597146 GDAP2Q9NXN4 497 aa16.45■□□□□ 0.22
LIG1-214ENST00000597146 STYXL1Q9Y6J8 313 aa16.45■□□□□ 0.22
LIG1-214ENST00000597146 COL12A1Q99715 3063 aa16.44■□□□□ 0.22
LIG1-214ENST00000597146 NEDD8-MDP1E9PL57 170 aa16.44■□□□□ 0.22
LIG1-214ENST00000597146 TRIM66O15016 1216 aa16.44■□□□□ 0.22
LIG1-214ENST00000597146 RRP8O43159 456 aaKnown RBP16.44■□□□□ 0.22
LIG1-214ENST00000597146 SYT1P21579 422 aa16.44■□□□□ 0.22
LIG1-214ENST00000597146 PPP3CCP48454 512 aa16.44■□□□□ 0.22
LIG1-214ENST00000597146 GTF2BQ00403 316 aa16.44■□□□□ 0.22
LIG1-214ENST00000597146 SUZ12Q15022 739 aaKnown RBP16.44■□□□□ 0.22
LIG1-214ENST00000597146 SF3A1Q15459 793 aaKnown RBP16.44■□□□□ 0.22
LIG1-214ENST00000597146 KIF19Q2TAC6 998 aa16.44■□□□□ 0.22
LIG1-214ENST00000597146 FUT11Q495W5 492 aa16.44■□□□□ 0.22
LIG1-214ENST00000597146 LAYNQ6UX15 382 aa16.44■□□□□ 0.22
LIG1-214ENST00000597146 TMPRSS12Q86WS5 348 aa16.44■□□□□ 0.22
LIG1-214ENST00000597146 NT5DC4Q86YG4 428 aa16.44■□□□□ 0.22
LIG1-214ENST00000597146 KCTD17Q8N5Z5 321 aa16.44■□□□□ 0.22
LIG1-214ENST00000597146 CSGALNACT2Q8N6G5 542 aa16.44■□□□□ 0.22
LIG1-214ENST00000597146 LRRC52Q8N7C0 313 aa16.44■□□□□ 0.22
LIG1-214ENST00000597146 CADM4Q8NFZ8 388 aa16.44■□□□□ 0.22
LIG1-214ENST00000597146 C1orf216Q8TAB5 229 aa16.44■□□□□ 0.22
LIG1-214ENST00000597146 SCFD1Q8WVM8 642 aa16.44■□□□□ 0.22
LIG1-214ENST00000597146 POMGNT1Q8WZA1 660 aa16.44■□□□□ 0.22
LIG1-214ENST00000597146 PCED1BQ96HM7 432 aa16.44■□□□□ 0.22
LIG1-214ENST00000597146 AK8Q96MA6 479 aa16.44■□□□□ 0.22
LIG1-214ENST00000597146 MKRN2Q9H000 416 aaKnown RBP16.44■□□□□ 0.22
LIG1-214ENST00000597146 SIX4Q9UIU6 781 aa16.44■□□□□ 0.22
LIG1-214ENST00000597146 SNX11Q9Y5W9 270 aa16.44■□□□□ 0.22
LIG1-214ENST00000597146 AK5Q9Y6K8 562 aa16.44■□□□□ 0.22
LIG1-214ENST00000597146 PLXNA2O75051 1894 aa16.44■□□□□ 0.22
LIG1-214ENST00000597146 METTL12A8MUP2 240 aa16.43■□□□□ 0.22
LIG1-214ENST00000597146 KCNK3O14649 394 aa16.43■□□□□ 0.22
LIG1-214ENST00000597146 KRT18P05783 430 aaKnown RBP16.43■□□□□ 0.22
LIG1-214ENST00000597146 PDGFRBP09619 1106 aa16.43■□□□□ 0.22
LIG1-214ENST00000597146 ADSSP30520 456 aa16.43■□□□□ 0.22
LIG1-214ENST00000597146 GRK6P43250 576 aa16.43■□□□□ 0.22
LIG1-214ENST00000597146 TPMTP51580 245 aa16.43■□□□□ 0.22
LIG1-214ENST00000597146 CXADRP78310 365 aa16.43■□□□□ 0.22
LIG1-214ENST00000597146 IL9RQ01113 521 aa16.43■□□□□ 0.22
LIG1-214ENST00000597146 CEBPZQ03701 1054 aaKnown RBP16.43■□□□□ 0.22
LIG1-214ENST00000597146 MDH1BQ5I0G3 518 aa16.43■□□□□ 0.22
LIG1-214ENST00000597146 C6orf118Q5T5N4 469 aa16.43■□□□□ 0.22
LIG1-214ENST00000597146 TDRD10Q5VZ19 366 aaKnown RBP16.43■□□□□ 0.22
LIG1-214ENST00000597146 SNX19Q92543 992 aa16.43■□□□□ 0.22
LIG1-214ENST00000597146 CEP295NLQ96MC4 621 aa16.43■□□□□ 0.22
LIG1-214ENST00000597146 SLITRK1Q96PX8 696 aa16.43■□□□□ 0.22
LIG1-214ENST00000597146 FAM213AQ9BRX8 229 aa16.43■□□□□ 0.22
LIG1-214ENST00000597146 CCSER2Q9H7U1 834 aa16.43■□□□□ 0.22
LIG1-214ENST00000597146 EHD2Q9NZN4 543 aa16.43■□□□□ 0.22
LIG1-214ENST00000597146 FTSJ1Q9UET6 329 aa16.43■□□□□ 0.22
LIG1-214ENST00000597146 CDH9Q9ULB4 789 aa16.43■□□□□ 0.22
LIG1-214ENST00000597146 UNC79Q9P2D8 2635 aa16.42■□□□□ 0.22
LIG1-214ENST00000597146 CBX4O00257 560 aa16.42■□□□□ 0.22
LIG1-214ENST00000597146 CACNG3O60359 315 aa16.42■□□□□ 0.22
LIG1-214ENST00000597146 SCP2P22307 547 aa16.42■□□□□ 0.22
LIG1-214ENST00000597146 LONP1P36776 959 aaKnown RBP16.42■□□□□ 0.22
LIG1-214ENST00000597146 CCT8P50990 548 aa16.42■□□□□ 0.22
LIG1-214ENST00000597146 SLFN12LQ6IEE8 588 aa16.42■□□□□ 0.22
LIG1-214ENST00000597146 METTL3Q86U44 580 aaKnown RBP16.42■□□□□ 0.22
LIG1-214ENST00000597146 BRSK2Q8IWQ3 736 aa16.42■□□□□ 0.22
LIG1-214ENST00000597146 FAM181AQ8N9Y4 354 aa16.42■□□□□ 0.22
LIG1-214ENST00000597146 SNIP1Q8TAD8 396 aaKnown RBP16.42■□□□□ 0.22
LIG1-214ENST00000597146 BAP1Q92560 729 aa16.42■□□□□ 0.22
LIG1-214ENST00000597146 SAAL1Q96ER3 474 aa16.42■□□□□ 0.22
LIG1-214ENST00000597146 C8orf48Q96LL4 319 aa16.42■□□□□ 0.22
LIG1-214ENST00000597146 SEMA4CQ9C0C4 833 aa16.42■□□□□ 0.22
LIG1-214ENST00000597146 MTMR12Q9C0I1 747 aa16.42■□□□□ 0.22
LIG1-214ENST00000597146 ITM2CQ9NQX7 267 aa16.42■□□□□ 0.22
LIG1-214ENST00000597146 ITGA11Q9UKX5 1188 aa16.42■□□□□ 0.22
LIG1-214ENST00000597146 NME7Q9Y5B8 376 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms