RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 MTPAPQ9NVV4 582 aaKnown RBP eCLIP15.9■□□□□ 0.14
TRIM28-205ENST00000595028 HESX1Q9UBX0 185 aa15.9■□□□□ 0.14
TRIM28-205ENST00000595028 DACH1Q9UI36 760 aa15.9■□□□□ 0.14
TRIM28-205ENST00000595028 KIAA1257Q9ULG3 409 aa15.9■□□□□ 0.14
TRIM28-205ENST00000595028 SH3BP1Q9Y3L3 701 aa15.9■□□□□ 0.14
TRIM28-205ENST00000595028 PRR5-ARHGAP8B1AHC4 643 aa15.89■□□□□ 0.13
TRIM28-205ENST00000595028 TULP2O00295 520 aa15.89■□□□□ 0.13
TRIM28-205ENST00000595028 XPO1O14980 1071 aaKnown RBP15.89■□□□□ 0.13
TRIM28-205ENST00000595028 PAPSS2O95340 614 aaPredicted RBP15.89■□□□□ 0.13
TRIM28-205ENST00000595028 TBX18O95935 607 aa15.89■□□□□ 0.13
TRIM28-205ENST00000595028 SETSIPP0DME0 302 aa15.89■□□□□ 0.13
TRIM28-205ENST00000595028 IRF1P10914 325 aa15.89■□□□□ 0.13
TRIM28-205ENST00000595028 RARGP13631 454 aa15.89■□□□□ 0.13
TRIM28-205ENST00000595028 DRD1P21728 446 aa15.89■□□□□ 0.13
TRIM28-205ENST00000595028 ERCC5P28715 1186 aaPredicted RBP15.89■□□□□ 0.13
TRIM28-205ENST00000595028 ARHGAP8P85298 464 aa15.89■□□□□ 0.13
TRIM28-205ENST00000595028 SATB1Q01826 763 aa15.89■□□□□ 0.13
TRIM28-205ENST00000595028 PDE4CQ08493 712 aa15.89■□□□□ 0.13
TRIM28-205ENST00000595028 PPP2R5DQ14738 602 aa15.89■□□□□ 0.13
TRIM28-205ENST00000595028 GAB4Q2WGN9 574 aa15.89■□□□□ 0.13
TRIM28-205ENST00000595028 KLHDC10Q6PID8 442 aa15.89■□□□□ 0.13
TRIM28-205ENST00000595028 SCD5Q86SK9 330 aa15.89■□□□□ 0.13
TRIM28-205ENST00000595028 RBBP8NLQ8NC74 664 aaPredicted RBP15.89■□□□□ 0.13
TRIM28-205ENST00000595028 GPT2Q8TD30 523 aa15.89■□□□□ 0.13
TRIM28-205ENST00000595028 TFAP2BQ92481 460 aa15.89■□□□□ 0.13
TRIM28-205ENST00000595028 KREMEN1Q96MU8 473 aa15.89■□□□□ 0.13
TRIM28-205ENST00000595028 RTKNQ9BST9 563 aa15.89■□□□□ 0.13
TRIM28-205ENST00000595028 THAP9Q9H5L6 903 aa15.89■□□□□ 0.13
TRIM28-205ENST00000595028 CLIC5Q9NZA1 410 aa15.89■□□□□ 0.13
TRIM28-205ENST00000595028 TBC1D14Q9P2M4 693 aa15.89■□□□□ 0.13
TRIM28-205ENST00000595028 NAGPAQ9UK23 515 aa15.89■□□□□ 0.13
TRIM28-205ENST00000595028 PCDHGA2Q9Y5H1 932 aa15.89■□□□□ 0.13
TRIM28-205ENST00000595028 ANKRD11Q6UB99 2663 aaPredicted RBP15.88■□□□□ 0.13
TRIM28-205ENST00000595028 GOLGA6L22H0YM25 854 aa15.88■□□□□ 0.13
TRIM28-205ENST00000595028 ADH1CP00326 375 aa15.88■□□□□ 0.13
TRIM28-205ENST00000595028 EGFP01133 1207 aa15.88■□□□□ 0.13
TRIM28-205ENST00000595028 ATP5C1P36542 298 aaKnown RBP15.88■□□□□ 0.13
TRIM28-205ENST00000595028 OPRD1P41143 372 aa15.88■□□□□ 0.13
TRIM28-205ENST00000595028 PLA2G4AP47712 749 aa15.88■□□□□ 0.13
TRIM28-205ENST00000595028 CXCL12P48061 93 aa15.88■□□□□ 0.13
TRIM28-205ENST00000595028 GALK1P51570 392 aa15.88■□□□□ 0.13
TRIM28-205ENST00000595028 TKTL1P51854 596 aa15.88■□□□□ 0.13
TRIM28-205ENST00000595028 LMNB2Q03252 620 aa15.88■□□□□ 0.13
TRIM28-205ENST00000595028 COL9A2Q14055 689 aaPredicted RBP15.88■□□□□ 0.13
TRIM28-205ENST00000595028 DHCR24Q15392 516 aa15.88■□□□□ 0.13
TRIM28-205ENST00000595028 TPD52L1Q16890 204 aaPredicted RBP15.88■□□□□ 0.13
TRIM28-205ENST00000595028 PKDCCQ504Y2 493 aa15.88■□□□□ 0.13
TRIM28-205ENST00000595028 TRIM65Q6PJ69 517 aa15.88■□□□□ 0.13
TRIM28-205ENST00000595028 LCLAT1Q6UWP7 414 aa15.88■□□□□ 0.13
TRIM28-205ENST00000595028 TADA2BQ86TJ2 420 aa15.88■□□□□ 0.13
TRIM28-205ENST00000595028 CREBRFQ8IUR6 639 aa15.88■□□□□ 0.13
TRIM28-205ENST00000595028 ZNF276Q8N554 614 aa15.88■□□□□ 0.13
TRIM28-205ENST00000595028 ZBTB44Q8NCP5 570 aa15.88■□□□□ 0.13
TRIM28-205ENST00000595028 WBP2Q969T9 261 aa15.88■□□□□ 0.13
TRIM28-205ENST00000595028 OTUB2Q96DC9 234 aa15.88■□□□□ 0.13
TRIM28-205ENST00000595028 ZSWIM1Q9BR11 485 aa15.88■□□□□ 0.13
TRIM28-205ENST00000595028 KLF16Q9BXK1 252 aaPredicted RBP15.88■□□□□ 0.13
TRIM28-205ENST00000595028 FAM126AQ9BYI3 521 aaPredicted RBP15.88■□□□□ 0.13
TRIM28-205ENST00000595028 FBRSL1Q9HCM7 1045 aaKnown RBP15.88■□□□□ 0.13
TRIM28-205ENST00000595028 ZSCAN32Q9NX65 697 aa15.88■□□□□ 0.13
TRIM28-205ENST00000595028 FRYQ5TBA9 3013 aa15.88■□□□□ 0.13
TRIM28-205ENST00000595028 GTPBP10A4D1E9 387 aaKnown RBP15.87■□□□□ 0.13
TRIM28-205ENST00000595028 RNF225M0QZC1 329 aaPredicted RBP15.87■□□□□ 0.13
TRIM28-205ENST00000595028 MDM4O15151 490 aa15.87■□□□□ 0.13
TRIM28-205ENST00000595028 RNF40O75150 1001 aa15.87■□□□□ 0.13
TRIM28-205ENST00000595028 RALAP11233 206 aa15.87■□□□□ 0.13
TRIM28-205ENST00000595028 BRD2P25440 801 aaKnown RBP15.87■□□□□ 0.13
TRIM28-205ENST00000595028 MTIF2P46199 727 aaKnown RBP15.87■□□□□ 0.13
TRIM28-205ENST00000595028 GOLGA8FQ08AF8 430 aa15.87■□□□□ 0.13
TRIM28-205ENST00000595028 GOLGA8DPQ0D2H9 430 aa15.87■□□□□ 0.13
TRIM28-205ENST00000595028 ADIGQ0VDE8 80 aa15.87■□□□□ 0.13
TRIM28-205ENST00000595028 STILQ15468 1287 aa15.87■□□□□ 0.13
TRIM28-205ENST00000595028 FBXO43Q4G163 708 aa15.87■□□□□ 0.13
TRIM28-205ENST00000595028 C10orf120Q5SQS8 335 aa15.87■□□□□ 0.13
TRIM28-205ENST00000595028 PKN3Q6P5Z2 889 aa15.87■□□□□ 0.13
TRIM28-205ENST00000595028 GBP6Q6ZN66 633 aa15.87■□□□□ 0.13
TRIM28-205ENST00000595028 RBM43Q6ZSC3 357 aaKnown RBP15.87■□□□□ 0.13
TRIM28-205ENST00000595028 FAM114A1Q8IWE2 563 aa15.87■□□□□ 0.13
TRIM28-205ENST00000595028 BBS7Q8IWZ6 715 aa15.87■□□□□ 0.13
TRIM28-205ENST00000595028 ADGRG2Q8IZP9 1017 aa15.87■□□□□ 0.13
TRIM28-205ENST00000595028 ARHGAP18Q8N392 663 aa15.87■□□□□ 0.13
TRIM28-205ENST00000595028 EZH1Q92800 747 aaPredicted RBP15.87■□□□□ 0.13
TRIM28-205ENST00000595028 CDK5RAP1Q96SZ6 601 aaKnown RBP15.87■□□□□ 0.13
TRIM28-205ENST00000595028 CRACR2AQ9BSW2 395 aa15.87■□□□□ 0.13
TRIM28-205ENST00000595028 ULBP1Q9BZM6 244 aa15.87■□□□□ 0.13
TRIM28-205ENST00000595028 LRRC4Q9HBW1 653 aa15.87■□□□□ 0.13
TRIM28-205ENST00000595028 C2orf42Q9NWW7 574 aa15.87■□□□□ 0.13
TRIM28-205ENST00000595028 DNMT3LQ9UJW3 386 aa15.87■□□□□ 0.13
TRIM28-205ENST00000595028 NUDT5Q9UKK9 219 aa15.87■□□□□ 0.13
TRIM28-205ENST00000595028 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.87■□□□□ 0.13
TRIM28-205ENST00000595028 CNTN6Q9UQ52 1028 aa15.87■□□□□ 0.13
TRIM28-205ENST00000595028 ASPMQ8IZT6 3477 aa15.87■□□□□ 0.13
TRIM28-205ENST00000595028 K7ESF4 209 aa15.86■□□□□ 0.13
TRIM28-205ENST00000595028 M0QYV0 167 aa15.86■□□□□ 0.13
TRIM28-205ENST00000595028 GREM1O60565 184 aa15.86■□□□□ 0.13
TRIM28-205ENST00000595028 ZBED1O96006 694 aa15.86■□□□□ 0.13
TRIM28-205ENST00000595028 ADH5P11766 374 aa15.86■□□□□ 0.13
TRIM28-205ENST00000595028 MAN2A1Q16706 1144 aa15.86■□□□□ 0.13
TRIM28-205ENST00000595028 CT47A1Q5JQC4 288 aaPredicted RBP15.86■□□□□ 0.13
TRIM28-205ENST00000595028 LY6G5CQ5SRR4 150 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms