RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 SETD3Q86TU7 594 aaPredicted RBP12.72□□□□□ -0.37
LIG1-207ENST00000594759 ALLCQ8N6M5 410 aa12.72□□□□□ -0.37
LIG1-207ENST00000594759 BHLHE22Q8NFJ8 381 aaPredicted RBP12.72□□□□□ -0.37
LIG1-207ENST00000594759 CPA5Q8WXQ8 436 aa12.72□□□□□ -0.37
LIG1-207ENST00000594759 FBXL8Q96CD0 374 aa12.72□□□□□ -0.37
LIG1-207ENST00000594759 MTG1Q9BT17 334 aaPredicted RBP12.72□□□□□ -0.37
LIG1-207ENST00000594759 RNPEPQ9H4A4 650 aa12.72□□□□□ -0.37
LIG1-207ENST00000594759 EFCAB1Q9HAE3 211 aa12.72□□□□□ -0.37
LIG1-207ENST00000594759 CDY2AQ9Y6F7 541 aa12.72□□□□□ -0.37
LIG1-207ENST00000594759 CDY1Q9Y6F8 540 aa12.72□□□□□ -0.37
LIG1-207ENST00000594759 CNTNAP4Q9C0A0 1308 aa12.72□□□□□ -0.37
LIG1-207ENST00000594759 GNGT2O14610 69 aa12.72□□□□□ -0.37
LIG1-207ENST00000594759 CSPG5O95196 566 aa12.72□□□□□ -0.37
LIG1-207ENST00000594759 IL1RL1Q01638 556 aa12.72□□□□□ -0.37
LIG1-207ENST00000594759 FAAP100Q0VG06 881 aa12.72□□□□□ -0.37
LIG1-207ENST00000594759 ASPRV1Q53RT3 343 aa12.72□□□□□ -0.37
LIG1-207ENST00000594759 COBLL1Q53SF7 1204 aa12.72□□□□□ -0.37
LIG1-207ENST00000594759 BRDTQ58F21 947 aaPredicted RBP12.72□□□□□ -0.37
LIG1-207ENST00000594759 GPATCH4Q5T3I0 446 aaKnown RBP12.72□□□□□ -0.37
LIG1-207ENST00000594759 NIPAL1Q6NVV3 410 aa12.72□□□□□ -0.37
LIG1-207ENST00000594759 PDCD6IPQ8WUM4 868 aaKnown RBP12.72□□□□□ -0.37
LIG1-207ENST00000594759 ITPKCQ96DU7 683 aa12.72□□□□□ -0.37
LIG1-207ENST00000594759 SNX27Q96L92 541 aa12.72□□□□□ -0.37
LIG1-207ENST00000594759 RIOK1Q9BRS2 568 aaKnown RBP12.72□□□□□ -0.37
LIG1-207ENST00000594759 EFR3BQ9Y2G0 817 aa12.72□□□□□ -0.37
LIG1-207ENST00000594759 DAGLAQ9Y4D2 1042 aa12.72□□□□□ -0.37
LIG1-207ENST00000594759 GTPBP10A4D1E9 387 aaKnown RBP12.71□□□□□ -0.37
LIG1-207ENST00000594759 hCG_1984214I3L0E3 225 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 SGPL1O95470 568 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 GSNP06396 782 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 SPATA31D3P0C874 917 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 MUTP22033 750 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 CDK9P50750 372 aaKnown RBP12.71□□□□□ -0.37
LIG1-207ENST00000594759 DEFA1P59665 94 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 DEFA3P59666 94 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 NFX1Q12986 1120 aaKnown RBP12.71□□□□□ -0.37
LIG1-207ENST00000594759 SLC27A3Q5K4L6 730 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 RWDD4Q6NW29 188 aaKnown RBP12.71□□□□□ -0.37
LIG1-207ENST00000594759 SPATA31D4Q6ZUB0 917 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 TTC30AQ86WT1 665 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 ZNF713Q8N859 430 aaPredicted RBP12.71□□□□□ -0.37
LIG1-207ENST00000594759 SLC10A4Q96EP9 437 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 POLR3CQ9BUI4 534 aaPredicted RBP12.71□□□□□ -0.37
LIG1-207ENST00000594759 TXLNGYQ9BZA5 131 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 CXorf21Q9HAI6 301 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 MAD2L2Q9UI95 211 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 IGSF9BQ9UPX0 1349 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 TNS2Q63HR2 1409 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 USP17L10C9JJH3 530 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 CLOCKO15516 846 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 ZSCAN5DPP0CG00 497 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 NAT1P18440 290 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 KRT6CP48668 564 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 IST1P53990 364 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 DLG4P78352 724 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 RALGPS1Q5JS13 557 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 SLC10A5Q5PT55 438 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 GALNT18Q6P9A2 607 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 TMC7Q7Z402 723 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 PLD3Q8IV08 490 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 IQCF2Q8IXL9 164 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 FLCNQ8NFG4 579 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 IRGQQ8WZA9 623 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 OSBPL11Q9BXB4 747 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 AMNQ9BXJ7 453 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 USP29Q9HBJ7 922 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 DDX43Q9NXZ2 648 aaKnown RBP12.71□□□□□ -0.37
LIG1-207ENST00000594759 STMN3Q9NZ72 180 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 CDH22Q9UJ99 828 aa12.71□□□□□ -0.37
LIG1-207ENST00000594759 NWD1Q149M9 1564 aa12.71□□□□□ -0.38
LIG1-207ENST00000594759 SAC3D1A6NKF1 404 aa12.71□□□□□ -0.38
LIG1-207ENST00000594759 BTBD19C9JJ37 291 aa12.71□□□□□ -0.38
LIG1-207ENST00000594759 TCEA3O75764 348 aa12.71□□□□□ -0.38
LIG1-207ENST00000594759 GSSP48637 474 aa12.71□□□□□ -0.38
LIG1-207ENST00000594759 SMAD1Q15797 465 aaKnown RBP12.71□□□□□ -0.38
LIG1-207ENST00000594759 UBAP2Q5T6F2 1119 aaKnown RBP12.71□□□□□ -0.38
LIG1-207ENST00000594759 OGFOD2Q6N063 350 aa12.71□□□□□ -0.38
LIG1-207ENST00000594759 SLC26A11Q86WA9 606 aa12.71□□□□□ -0.38
LIG1-207ENST00000594759 TTLL6Q8N841 843 aa12.71□□□□□ -0.38
LIG1-207ENST00000594759 FAM47BQ8NA70 645 aa12.71□□□□□ -0.38
LIG1-207ENST00000594759 SHISA4Q96DD7 197 aa12.71□□□□□ -0.38
LIG1-207ENST00000594759 OLFM1Q99784 485 aa12.71□□□□□ -0.38
LIG1-207ENST00000594759 FRMD8Q9BZ67 464 aaPredicted RBP12.71□□□□□ -0.38
LIG1-207ENST00000594759 TMEM206Q9H813 350 aa12.71□□□□□ -0.38
LIG1-207ENST00000594759 SHOC2Q9UQ13 582 aa12.71□□□□□ -0.38
LIG1-207ENST00000594759 K7EPI3 171 aa12.7□□□□□ -0.38
LIG1-207ENST00000594759 MSX2P35548 267 aaPredicted RBP12.7□□□□□ -0.38
LIG1-207ENST00000594759 KPNA1P52294 538 aaPredicted RBP12.7□□□□□ -0.38
LIG1-207ENST00000594759 RAD23AP54725 363 aa12.7□□□□□ -0.38
LIG1-207ENST00000594759 SPOPLQ6IQ16 392 aa12.7□□□□□ -0.38
LIG1-207ENST00000594759 SCYL2Q6P3W7 929 aa12.7□□□□□ -0.38
LIG1-207ENST00000594759 VGLL2Q8N8G2 317 aa12.7□□□□□ -0.38
LIG1-207ENST00000594759 CHURC1Q8WUH1 139 aa12.7□□□□□ -0.38
LIG1-207ENST00000594759 PRICKLE1Q96MT3 831 aaPredicted RBP12.7□□□□□ -0.38
LIG1-207ENST00000594759 KLC2Q9H0B6 622 aa12.7□□□□□ -0.38
LIG1-207ENST00000594759 MID2Q9UJV3 735 aa12.7□□□□□ -0.38
LIG1-207ENST00000594759 TLK1Q9UKI8 766 aa12.7□□□□□ -0.38
LIG1-207ENST00000594759 POMPQ9Y244 141 aa12.7□□□□□ -0.38
LIG1-207ENST00000594759 ZHX2Q9Y6X8 837 aa12.7□□□□□ -0.38
LIG1-207ENST00000594759 FSCN2O14926 492 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms