RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 SMC1AQ14683 1233 aaKnown RBP23.26■■□□□ 1.31
ATG4D-209ENST00000588857 BSPRYQ5W0U4 402 aa23.26■■□□□ 1.31
ATG4D-209ENST00000588857 RASGEF1CQ8N431 466 aa23.26■■□□□ 1.31
ATG4D-209ENST00000588857 TCF25Q9BQ70 676 aa23.26■■□□□ 1.31
ATG4D-209ENST00000588857 CYP4F11Q9HBI6 524 aa23.26■■□□□ 1.31
ATG4D-209ENST00000588857 ENTPD7Q9NQZ7 604 aa23.26■■□□□ 1.31
ATG4D-209ENST00000588857 COMMD8Q9NX08 183 aa23.26■■□□□ 1.31
ATG4D-209ENST00000588857 DDX56Q9NY93 547 aaKnown RBP23.26■■□□□ 1.31
ATG4D-209ENST00000588857 EHD2Q9NZN4 543 aa23.26■■□□□ 1.31
ATG4D-209ENST00000588857 PCSK1NQ9UHG2 260 aa23.26■■□□□ 1.31
ATG4D-209ENST00000588857 MAFFQ9ULX9 164 aa23.26■■□□□ 1.31
ATG4D-209ENST00000588857 USP18Q9UMW8 372 aa23.26■■□□□ 1.31
ATG4D-209ENST00000588857 NAALADL1Q9UQQ1 740 aa23.26■■□□□ 1.31
ATG4D-209ENST00000588857 SCML2Q9UQR0 700 aa23.26■■□□□ 1.31
ATG4D-209ENST00000588857 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP23.25■■□□□ 1.31
ATG4D-209ENST00000588857 C5orf67F2Z3F1 127 aa23.25■■□□□ 1.31
ATG4D-209ENST00000588857 PDE2AO00408 941 aaPredicted RBP23.25■■□□□ 1.31
ATG4D-209ENST00000588857 PRPSAP2O60256 369 aa23.25■■□□□ 1.31
ATG4D-209ENST00000588857 RB1P06400 928 aa23.25■■□□□ 1.31
ATG4D-209ENST00000588857 PYGMP11217 842 aa23.25■■□□□ 1.31
ATG4D-209ENST00000588857 YWHAQP27348 245 aa23.25■■□□□ 1.31
ATG4D-209ENST00000588857 ELF1P32519 619 aa23.25■■□□□ 1.31
ATG4D-209ENST00000588857 SULT1E1P49888 294 aa23.25■■□□□ 1.31
ATG4D-209ENST00000588857 YWHAGP61981 247 aaKnown RBP eCLIP23.25■■□□□ 1.31
ATG4D-209ENST00000588857 SLC25A11Q02978 314 aaKnown RBP23.25■■□□□ 1.31
ATG4D-209ENST00000588857 UBE3AQ05086 875 aa23.25■■□□□ 1.31
ATG4D-209ENST00000588857 PPP2R2DQ66LE6 453 aa23.25■■□□□ 1.31
ATG4D-209ENST00000588857 SCYL2Q6P3W7 929 aa23.25■■□□□ 1.31
ATG4D-209ENST00000588857 STRADAQ7RTN6 431 aa23.25■■□□□ 1.31
ATG4D-209ENST00000588857 STKLD1Q8NE28 680 aa23.25■■□□□ 1.31
ATG4D-209ENST00000588857 CENPIQ92674 756 aaPredicted RBP23.25■■□□□ 1.31
ATG4D-209ENST00000588857 RPGRIP1Q96KN7 1286 aa23.25■■□□□ 1.31
ATG4D-209ENST00000588857 NAP1L3Q99457 506 aaPredicted RBP23.25■■□□□ 1.31
ATG4D-209ENST00000588857 C11orf84Q9BUA3 381 aaPredicted RBP23.25■■□□□ 1.31
ATG4D-209ENST00000588857 ZWILCHQ9H900 591 aa23.25■■□□□ 1.31
ATG4D-209ENST00000588857 RRN3Q9NYV6 651 aa23.25■■□□□ 1.31
ATG4D-209ENST00000588857 MTUS1Q9ULD2 1270 aa23.25■■□□□ 1.31
ATG4D-209ENST00000588857 PRRG1O14668 218 aa23.24■■□□□ 1.31
ATG4D-209ENST00000588857 ZRANB2O95218 330 aaKnown RBP eCLIP23.24■■□□□ 1.31
ATG4D-209ENST00000588857 SEC24AO95486 1093 aa23.24■■□□□ 1.31
ATG4D-209ENST00000588857 TRUB2O95900 331 aaKnown RBP23.24■■□□□ 1.31
ATG4D-209ENST00000588857 FYNP06241 537 aa23.24■■□□□ 1.31
ATG4D-209ENST00000588857 CNPP09543 421 aaKnown RBP23.24■■□□□ 1.31
ATG4D-209ENST00000588857 SYPL2Q5VXT5 272 aa23.24■■□□□ 1.31
ATG4D-209ENST00000588857 BTBD8Q5XKL5 378 aa23.24■■□□□ 1.31
ATG4D-209ENST00000588857 BEND5Q7L4P6 421 aa23.24■■□□□ 1.31
ATG4D-209ENST00000588857 CCDC50Q8IVM0 306 aa23.24■■□□□ 1.31
ATG4D-209ENST00000588857 RCOR2Q8IZ40 523 aa23.24■■□□□ 1.31
ATG4D-209ENST00000588857 ARHGAP18Q8N392 663 aa23.24■■□□□ 1.31
ATG4D-209ENST00000588857 MYRIPQ8NFW9 859 aa23.24■■□□□ 1.31
ATG4D-209ENST00000588857 EXD1Q8NHP7 514 aa23.24■■□□□ 1.31
ATG4D-209ENST00000588857 SPPL3Q8TCT6 385 aa23.24■■□□□ 1.31
ATG4D-209ENST00000588857 POF1BQ8WVV4 589 aa23.24■■□□□ 1.31
ATG4D-209ENST00000588857 MYLIPQ8WY64 445 aa23.24■■□□□ 1.31
ATG4D-209ENST00000588857 EDEM1Q92611 657 aa23.24■■□□□ 1.31
ATG4D-209ENST00000588857 SAMD11Q96NU1 681 aa23.24■■□□□ 1.31
ATG4D-209ENST00000588857 TBCBQ99426 244 aa23.24■■□□□ 1.31
ATG4D-209ENST00000588857 NPY6RQ99463 290 aa23.24■■□□□ 1.31
ATG4D-209ENST00000588857 EMILIN2Q9BXX0 1053 aa23.24■■□□□ 1.31
ATG4D-209ENST00000588857 SMARCAL1Q9NZC9 954 aa23.24■■□□□ 1.31
ATG4D-209ENST00000588857 IL37Q9NZH6 218 aa23.24■■□□□ 1.31
ATG4D-209ENST00000588857 TTC7AQ9ULT0 858 aaPredicted RBP23.24■■□□□ 1.31
ATG4D-209ENST00000588857 FGGP02679 453 aa23.23■■□□□ 1.31
ATG4D-209ENST00000588857 KRT1P04264 644 aa23.23■■□□□ 1.31
ATG4D-209ENST00000588857 ADH1AP07327 375 aa23.23■■□□□ 1.31
ATG4D-209ENST00000588857 ATF6P18850 670 aa23.23■■□□□ 1.31
ATG4D-209ENST00000588857 TFE3P19532 575 aaPredicted RBP23.23■■□□□ 1.31
ATG4D-209ENST00000588857 CETN2P41208 172 aa23.23■■□□□ 1.31
ATG4D-209ENST00000588857 ALDH1A3P47895 512 aa23.23■■□□□ 1.31
ATG4D-209ENST00000588857 MON1AQ86VX9 555 aa23.23■■□□□ 1.31
ATG4D-209ENST00000588857 GIPC2Q8TF65 315 aa23.23■■□□□ 1.31
ATG4D-209ENST00000588857 NT5C3BQ969T7 300 aa23.23■■□□□ 1.31
ATG4D-209ENST00000588857 RBM41Q96IZ5 413 aaKnown RBP23.23■■□□□ 1.31
ATG4D-209ENST00000588857 TGS1Q96RS0 853 aaKnown RBP23.23■■□□□ 1.31
ATG4D-209ENST00000588857 TLR9Q9NR96 1032 aa23.23■■□□□ 1.31
ATG4D-209ENST00000588857 ABCC13Q9NSE7 274 aa23.23■■□□□ 1.31
ATG4D-209ENST00000588857 SLC38A8A6NNN8 435 aa23.23■■□□□ 1.31
ATG4D-209ENST00000588857 M0QYT0 321 aa23.23■■□□□ 1.31
ATG4D-209ENST00000588857 LPXNO60711 386 aa23.23■■□□□ 1.31
ATG4D-209ENST00000588857 IL1R2P27930 398 aa23.23■■□□□ 1.31
ATG4D-209ENST00000588857 HDAC4P56524 1084 aa23.23■■□□□ 1.31
ATG4D-209ENST00000588857 ERVFC1P60507 584 aa23.23■■□□□ 1.31
ATG4D-209ENST00000588857 USP46P62068 366 aa23.23■■□□□ 1.31
ATG4D-209ENST00000588857 LONRF2Q1L5Z9 754 aa23.23■■□□□ 1.31
ATG4D-209ENST00000588857 SMTNL2Q2TAL5 461 aa23.23■■□□□ 1.31
ATG4D-209ENST00000588857 ATP13A4Q4VNC1 1196 aa23.23■■□□□ 1.31
ATG4D-209ENST00000588857 RAB6CQ53S08 254 aa23.23■■□□□ 1.31
ATG4D-209ENST00000588857 TXNRD3NBQ6F5E7 133 aa23.23■■□□□ 1.31
ATG4D-209ENST00000588857 AADACL2Q6P093 401 aa23.23■■□□□ 1.31
ATG4D-209ENST00000588857 ZNF572Q7Z3I7 529 aaPredicted RBP23.23■■□□□ 1.31
ATG4D-209ENST00000588857 LRRN4CLQ8ND94 238 aa23.23■■□□□ 1.31
ATG4D-209ENST00000588857 SLC7A14Q8TBB6 771 aa23.23■■□□□ 1.31
ATG4D-209ENST00000588857 FBXO32Q969P5 355 aa23.23■■□□□ 1.31
ATG4D-209ENST00000588857 RAB6CQ9H0N0 254 aa23.23■■□□□ 1.31
ATG4D-209ENST00000588857 KLHL11Q9NVR0 708 aa23.23■■□□□ 1.31
ATG4D-209ENST00000588857 IRAK3Q9Y616 596 aa23.23■■□□□ 1.31
ATG4D-209ENST00000588857 ARHGEF15O94989 841 aa23.22■■□□□ 1.31
ATG4D-209ENST00000588857 BOLA3Q53S33 107 aa23.22■■□□□ 1.31
ATG4D-209ENST00000588857 KCNT1Q5JUK3 1230 aa23.22■■□□□ 1.31
ATG4D-209ENST00000588857 TCEAL8Q8IYN2 117 aa23.22■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms