RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 ELAVL2Q12926 359 aaKnown RBP20.7■□□□□ 0.9
TRIM47-204ENST00000587339 NFE2Q16621 373 aaPredicted RBP20.7■□□□□ 0.9
TRIM47-204ENST00000587339 ZNF280DQ6N043 979 aa20.7■□□□□ 0.9
TRIM47-204ENST00000587339 VWCEQ96DN2 955 aa20.7■□□□□ 0.9
TRIM47-204ENST00000587339 ACBD3Q9H3P7 528 aa20.7■□□□□ 0.9
TRIM47-204ENST00000587339 ABI2Q9NYB9 513 aaPredicted RBP20.7■□□□□ 0.9
TRIM47-204ENST00000587339 CALCOCO1Q9P1Z2 691 aa20.7■□□□□ 0.9
TRIM47-204ENST00000587339 HPCAL4Q9UM19 191 aa20.7■□□□□ 0.9
TRIM47-204ENST00000587339 NAALADL1Q9UQQ1 740 aa20.7■□□□□ 0.9
TRIM47-204ENST00000587339 ZNF148Q9UQR1 794 aa20.7■□□□□ 0.9
TRIM47-204ENST00000587339 M0QYT0 321 aa20.69■□□□□ 0.9
TRIM47-204ENST00000587339 RRP9O43818 475 aaKnown RBP20.69■□□□□ 0.9
TRIM47-204ENST00000587339 LTFP02788 710 aa20.69■□□□□ 0.9
TRIM47-204ENST00000587339 FGFR3P22607 806 aa20.69■□□□□ 0.9
TRIM47-204ENST00000587339 MMRN1Q13201 1228 aa20.69■□□□□ 0.9
TRIM47-204ENST00000587339 MRPL58Q14197 206 aaKnown RBP20.69■□□□□ 0.9
TRIM47-204ENST00000587339 PM20D1Q6GTS8 502 aa20.69■□□□□ 0.9
TRIM47-204ENST00000587339 GSTA5Q7RTV2 222 aa20.69■□□□□ 0.9
TRIM47-204ENST00000587339 NECAB2Q7Z6G3 386 aa20.69■□□□□ 0.9
TRIM47-204ENST00000587339 IRGQQ8WZA9 623 aa20.69■□□□□ 0.9
TRIM47-204ENST00000587339 B3GALT6Q96L58 329 aa20.69■□□□□ 0.9
TRIM47-204ENST00000587339 PRDM5Q9NQX1 630 aaPredicted RBP20.69■□□□□ 0.9
TRIM47-204ENST00000587339 SAE1Q9UBE0 346 aaPredicted RBP20.69■□□□□ 0.9
TRIM47-204ENST00000587339 ASIC3Q9UHC3 531 aa20.69■□□□□ 0.9
TRIM47-204ENST00000587339 DGKIO75912 1065 aa20.68■□□□□ 0.9
TRIM47-204ENST00000587339 FYNP06241 537 aa20.68■□□□□ 0.9
TRIM47-204ENST00000587339 NCAM1P13591 858 aa20.68■□□□□ 0.9
TRIM47-204ENST00000587339 ALDH7A1P49419 539 aaKnown RBP20.68■□□□□ 0.9
TRIM47-204ENST00000587339 PLTPP55058 493 aa20.68■□□□□ 0.9
TRIM47-204ENST00000587339 PITX1P78337 314 aaPredicted RBP20.68■□□□□ 0.9
TRIM47-204ENST00000587339 PTK6Q13882 451 aa20.68■□□□□ 0.9
TRIM47-204ENST00000587339 CA9Q16790 459 aa20.68■□□□□ 0.9
TRIM47-204ENST00000587339 ZNF365Q70YC5 407 aa20.68■□□□□ 0.9
TRIM47-204ENST00000587339 FAM131BQ86XD5 332 aa20.68■□□□□ 0.9
TRIM47-204ENST00000587339 VSIG1Q86XK7 387 aa20.68■□□□□ 0.9
TRIM47-204ENST00000587339 KRT222Q8N1A0 295 aa20.68■□□□□ 0.9
TRIM47-204ENST00000587339 ACTL9Q8TC94 416 aa20.68■□□□□ 0.9
TRIM47-204ENST00000587339 TRAF3IP1Q8TDR0 691 aaPredicted RBP20.68■□□□□ 0.9
TRIM47-204ENST00000587339 FUBP3Q96I24 572 aaKnown RBP eCLIP20.68■□□□□ 0.9
TRIM47-204ENST00000587339 FMO2Q99518 471 aa20.68■□□□□ 0.9
TRIM47-204ENST00000587339 FRMD8P1Q9BZ68 369 aaPredicted RBP20.68■□□□□ 0.9
TRIM47-204ENST00000587339 PCDH18Q9HCL0 1135 aa20.68■□□□□ 0.9
TRIM47-204ENST00000587339 ZDHHC18Q9NUE0 388 aa20.68■□□□□ 0.9
TRIM47-204ENST00000587339 GRHL1Q9NZI5 618 aa20.68■□□□□ 0.9
TRIM47-204ENST00000587339 AP4E1Q9UPM8 1137 aa20.68■□□□□ 0.9
TRIM47-204ENST00000587339 USP3Q9Y6I4 520 aa20.68■□□□□ 0.9
TRIM47-204ENST00000587339 MICAL3Q7RTP6 2002 aa20.68■□□□□ 0.9
TRIM47-204ENST00000587339 OR6C75A6NL08 312 aa20.68■□□□□ 0.9
TRIM47-204ENST00000587339 APOC4-APOC2K7ER74 178 aa20.68■□□□□ 0.9
TRIM47-204ENST00000587339 TIMP1P01033 207 aa20.68■□□□□ 0.9
TRIM47-204ENST00000587339 APOC2P02655 101 aa20.68■□□□□ 0.9
TRIM47-204ENST00000587339 RDXP35241 583 aaKnown RBP20.68■□□□□ 0.9
TRIM47-204ENST00000587339 VCPP55072 806 aaKnown RBP20.68■□□□□ 0.9
TRIM47-204ENST00000587339 OTUD4Q01804 1114 aaKnown RBP20.68■□□□□ 0.9
TRIM47-204ENST00000587339 GPS2Q13227 327 aa20.68■□□□□ 0.9
TRIM47-204ENST00000587339 TFDP2Q14188 446 aa20.68■□□□□ 0.9
TRIM47-204ENST00000587339 DPYSL2Q16555 572 aa20.68■□□□□ 0.9
TRIM47-204ENST00000587339 PPP6R3Q5H9R7 873 aaPredicted RBP20.68■□□□□ 0.9
TRIM47-204ENST00000587339 BNIPLQ7Z465 357 aa20.68■□□□□ 0.9
TRIM47-204ENST00000587339 TMEM173Q86WV6 379 aaPredicted RBP20.68■□□□□ 0.9
TRIM47-204ENST00000587339 SCML4Q8N228 414 aa20.68■□□□□ 0.9
TRIM47-204ENST00000587339 CCDC185Q8N715 623 aa20.68■□□□□ 0.9
TRIM47-204ENST00000587339 NKD2Q969F2 451 aaPredicted RBP20.68■□□□□ 0.9
TRIM47-204ENST00000587339 RNF157Q96PX1 679 aa20.68■□□□□ 0.9
TRIM47-204ENST00000587339 TMEM106CQ9BVX2 250 aa20.68■□□□□ 0.9
TRIM47-204ENST00000587339 DHX35Q9H5Z1 703 aaKnown RBP20.68■□□□□ 0.9
TRIM47-204ENST00000587339 DRG1Q9Y295 367 aaKnown RBP20.68■□□□□ 0.9
TRIM47-204ENST00000587339 NLRC5Q86WI3 1866 aa20.67■□□□□ 0.9
TRIM47-204ENST00000587339 SYNJ2BP-COX16A0A087WUM0 186 aa20.67■□□□□ 0.9
TRIM47-204ENST00000587339 ABHD14A-ACY1A0A1B0GW23 586 aa20.67■□□□□ 0.9
TRIM47-204ENST00000587339 IL4RP24394 825 aa20.67■□□□□ 0.9
TRIM47-204ENST00000587339 DEUP1Q05D60 604 aa20.67■□□□□ 0.9
TRIM47-204ENST00000587339 CALCOCO2Q13137 446 aa20.67■□□□□ 0.9
TRIM47-204ENST00000587339 NME3Q13232 169 aa20.67■□□□□ 0.9
TRIM47-204ENST00000587339 TRIP13Q15645 432 aaPredicted RBP20.67■□□□□ 0.9
TRIM47-204ENST00000587339 OTUD1Q5VV17 481 aaPredicted RBP20.67■□□□□ 0.9
TRIM47-204ENST00000587339 BHLHA9Q7RTU4 235 aa20.67■□□□□ 0.9
TRIM47-204ENST00000587339 SCN4BQ8IWT1 228 aa20.67■□□□□ 0.9
TRIM47-204ENST00000587339 CCDC89Q8N998 374 aa20.67■□□□□ 0.9
TRIM47-204ENST00000587339 SCAMP5Q8TAC9 235 aa20.67■□□□□ 0.9
TRIM47-204ENST00000587339 SLC35B2Q8TB61 432 aa20.67■□□□□ 0.9
TRIM47-204ENST00000587339 SLC7A14Q8TBB6 771 aa20.67■□□□□ 0.9
TRIM47-204ENST00000587339 FBXO25Q8TCJ0 367 aa20.67■□□□□ 0.9
TRIM47-204ENST00000587339 ZNF670Q9BS34 389 aa20.67■□□□□ 0.9
TRIM47-204ENST00000587339 COX16Q9P0S2 106 aa20.67■□□□□ 0.9
TRIM47-204ENST00000587339 NEU2Q9Y3R4 380 aa20.67■□□□□ 0.9
TRIM47-204ENST00000587339 CSF2RAP15509 400 aa20.66■□□□□ 0.9
TRIM47-204ENST00000587339 ITGB8P26012 769 aa20.66■□□□□ 0.9
TRIM47-204ENST00000587339 SLC5A3P53794 718 aa20.66■□□□□ 0.9
TRIM47-204ENST00000587339 OASLQ15646 514 aaKnown RBP20.66■□□□□ 0.9
TRIM47-204ENST00000587339 ANKRD20A8PQ5CZ79 823 aa20.66■□□□□ 0.9
TRIM47-204ENST00000587339 VSTM1Q6UX27 236 aa20.66■□□□□ 0.9
TRIM47-204ENST00000587339 MREGQ8N565 214 aa20.66■□□□□ 0.9
TRIM47-204ENST00000587339 TSEN2Q8NCE0 465 aaKnown RBP20.66■□□□□ 0.9
TRIM47-204ENST00000587339 FAM71BQ8TC56 605 aa20.66■□□□□ 0.9
TRIM47-204ENST00000587339 PCDHB5Q9Y5E4 795 aa20.66■□□□□ 0.9
TRIM47-204ENST00000587339 FNDC1Q4ZHG4 1894 aaPredicted RBP20.66■□□□□ 0.9
TRIM47-204ENST00000587339 TRIM43BA6NCK2 446 aa20.66■□□□□ 0.9
TRIM47-204ENST00000587339 ITGAVP06756 1048 aa20.66■□□□□ 0.9
TRIM47-204ENST00000587339 RAG1P15918 1043 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 236.3 ms