RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 ZDBF2Q9HCK1 2354 aa11.43□□□□□ -0.58
CLIP3-203ENST00000586457 PTPRDP23468 1912 aa11.43□□□□□ -0.58
CLIP3-203ENST00000586457 KMT2EQ8IZD2 1858 aa11.42□□□□□ -0.58
CLIP3-203ENST00000586457 RNF225M0QZC1 329 aaPredicted RBP11.42□□□□□ -0.58
CLIP3-203ENST00000586457 SART1O43290 800 aaKnown RBP11.42□□□□□ -0.58
CLIP3-203ENST00000586457 FBXO21O94952 628 aa11.42□□□□□ -0.58
CLIP3-203ENST00000586457 APODP05090 189 aa11.42□□□□□ -0.58
CLIP3-203ENST00000586457 HMBSP08397 361 aa11.42□□□□□ -0.58
CLIP3-203ENST00000586457 SP9P0CG40 484 aa11.42□□□□□ -0.58
CLIP3-203ENST00000586457 ADH5P11766 374 aa11.42□□□□□ -0.58
CLIP3-203ENST00000586457 PON1P27169 355 aa11.42□□□□□ -0.58
CLIP3-203ENST00000586457 ACADSBP45954 432 aa11.42□□□□□ -0.58
CLIP3-203ENST00000586457 HARS2P49590 506 aaKnown RBP11.42□□□□□ -0.58
CLIP3-203ENST00000586457 RGS7P49802 495 aa11.42□□□□□ -0.58
CLIP3-203ENST00000586457 MRE11P49959 708 aa11.42□□□□□ -0.58
CLIP3-203ENST00000586457 RAPGEF1Q13905 1077 aa11.42□□□□□ -0.58
CLIP3-203ENST00000586457 DHCR24Q15392 516 aa11.42□□□□□ -0.58
CLIP3-203ENST00000586457 ZNF528Q3MIS6 628 aa11.42□□□□□ -0.58
CLIP3-203ENST00000586457 TTC30AQ86WT1 665 aa11.42□□□□□ -0.58
CLIP3-203ENST00000586457 IRF2BP1Q8IU81 584 aa11.42□□□□□ -0.58
CLIP3-203ENST00000586457 KCTD13Q8WZ19 329 aa11.42□□□□□ -0.58
CLIP3-203ENST00000586457 SECISBP2LQ93073 1101 aaKnown RBP11.42□□□□□ -0.58
CLIP3-203ENST00000586457 XPO6Q96QU8 1125 aaKnown RBP11.42□□□□□ -0.58
CLIP3-203ENST00000586457 PNKPQ96T60 521 aa11.42□□□□□ -0.58
CLIP3-203ENST00000586457 HINFPQ9BQA5 517 aa11.42□□□□□ -0.58
CLIP3-203ENST00000586457 TRIM62Q9BVG3 475 aa11.42□□□□□ -0.58
CLIP3-203ENST00000586457 FAM126AQ9BYI3 521 aaPredicted RBP11.42□□□□□ -0.58
CLIP3-203ENST00000586457 MIS12Q9H081 205 aa11.42□□□□□ -0.58
CLIP3-203ENST00000586457 VPS16Q9H269 839 aa11.42□□□□□ -0.58
CLIP3-203ENST00000586457 SYNCQ9H7C4 482 aa11.42□□□□□ -0.58
CLIP3-203ENST00000586457 NMUR1Q9HB89 426 aa11.42□□□□□ -0.58
CLIP3-203ENST00000586457 CNGB3Q9NQW8 809 aa11.42□□□□□ -0.58
CLIP3-203ENST00000586457 RBM12Q9NTZ6 932 aaKnown RBP11.42□□□□□ -0.58
CLIP3-203ENST00000586457 MARCH2Q9P0N8 246 aa11.42□□□□□ -0.58
CLIP3-203ENST00000586457 WDR35Q9P2L0 1181 aa11.42□□□□□ -0.58
CLIP3-203ENST00000586457 DNAJC12Q9UKB3 198 aa11.42□□□□□ -0.58
CLIP3-203ENST00000586457 RAB23Q9ULC3 237 aa11.42□□□□□ -0.58
CLIP3-203ENST00000586457 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.42□□□□□ -0.58
CLIP3-203ENST00000586457 USP3Q9Y6I4 520 aa11.42□□□□□ -0.58
CLIP3-203ENST00000586457 GREB1Q4ZG55 1949 aa11.42□□□□□ -0.58
CLIP3-203ENST00000586457 MIA3Q5JRA6 1907 aa11.42□□□□□ -0.58
CLIP3-203ENST00000586457 DENND4CQ5VZ89 1909 aa11.42□□□□□ -0.58
CLIP3-203ENST00000586457 SLC12A8A0AV02 714 aa11.41□□□□□ -0.58
CLIP3-203ENST00000586457 OTOL1A6NHN0 477 aaPredicted RBP11.41□□□□□ -0.58
CLIP3-203ENST00000586457 SMTNL1A8MU46 457 aa11.41□□□□□ -0.58
CLIP3-203ENST00000586457 PIK3R2O00459 728 aa11.41□□□□□ -0.58
CLIP3-203ENST00000586457 CAPN9O14815 690 aa11.41□□□□□ -0.58
CLIP3-203ENST00000586457 ZBTB24O43167 697 aaPredicted RBP11.41□□□□□ -0.58
CLIP3-203ENST00000586457 CYBBP04839 570 aa11.41□□□□□ -0.58
CLIP3-203ENST00000586457 CHKAP35790 457 aa11.41□□□□□ -0.58
CLIP3-203ENST00000586457 ZXDBP98169 803 aa11.41□□□□□ -0.58
CLIP3-203ENST00000586457 MYL5Q02045 173 aa11.41□□□□□ -0.58
CLIP3-203ENST00000586457 TMEM196Q5HYL7 178 aa11.41□□□□□ -0.58
CLIP3-203ENST00000586457 RAB41Q5JT25 222 aa11.41□□□□□ -0.58
CLIP3-203ENST00000586457 LY6G5CQ5SRR4 150 aa11.41□□□□□ -0.58
CLIP3-203ENST00000586457 BSPRYQ5W0U4 402 aa11.41□□□□□ -0.58
CLIP3-203ENST00000586457 CAVIN1Q6NZI2 390 aaKnown RBP11.41□□□□□ -0.58
CLIP3-203ENST00000586457 GJB7Q6PEY0 223 aa11.41□□□□□ -0.58
CLIP3-203ENST00000586457 HTR3DQ70Z44 454 aa11.41□□□□□ -0.58
CLIP3-203ENST00000586457 ZNF276Q8N554 614 aa11.41□□□□□ -0.58
CLIP3-203ENST00000586457 UBR7Q8N806 425 aa11.41□□□□□ -0.58
CLIP3-203ENST00000586457 ZNF606Q8WXB4 792 aa11.41□□□□□ -0.58
CLIP3-203ENST00000586457 TFAP2BQ92481 460 aa11.41□□□□□ -0.58
CLIP3-203ENST00000586457 CHFRQ96EP1 664 aa11.41□□□□□ -0.58
CLIP3-203ENST00000586457 HSFY1Q96LI6 401 aa11.41□□□□□ -0.58
CLIP3-203ENST00000586457 KREMEN1Q96MU8 473 aa11.41□□□□□ -0.58
CLIP3-203ENST00000586457 MED15Q96RN5 788 aa11.41□□□□□ -0.58
CLIP3-203ENST00000586457 KLF16Q9BXK1 252 aaPredicted RBP11.41□□□□□ -0.58
CLIP3-203ENST00000586457 SPHK2Q9NRA0 654 aa11.41□□□□□ -0.58
CLIP3-203ENST00000586457 FANCLQ9NW38 375 aa11.41□□□□□ -0.58
CLIP3-203ENST00000586457 ZSCAN32Q9NX65 697 aa11.41□□□□□ -0.58
CLIP3-203ENST00000586457 TAB2Q9NYJ8 693 aa11.41□□□□□ -0.58
CLIP3-203ENST00000586457 DEC1Q9P2X7 70 aa11.41□□□□□ -0.58
CLIP3-203ENST00000586457 OBSL1O75147 1896 aa11.4□□□□□ -0.58
CLIP3-203ENST00000586457 TBC1D3BA6NDS4 549 aa11.4□□□□□ -0.58
CLIP3-203ENST00000586457 BECN2A8MW95 431 aa11.4□□□□□ -0.58
CLIP3-203ENST00000586457 TULP2O00295 520 aa11.4□□□□□ -0.58
CLIP3-203ENST00000586457 MDM4O15151 490 aa11.4□□□□□ -0.58
CLIP3-203ENST00000586457 EGFP01133 1207 aa11.4□□□□□ -0.58
CLIP3-203ENST00000586457 CYP17A1P05093 508 aa11.4□□□□□ -0.58
CLIP3-203ENST00000586457 NBL1P41271 181 aa11.4□□□□□ -0.58
CLIP3-203ENST00000586457 TPM4P67936 248 aa11.4□□□□□ -0.58
CLIP3-203ENST00000586457 FZD5Q13467 585 aa11.4□□□□□ -0.58
CLIP3-203ENST00000586457 CCINQ13939 588 aa11.4□□□□□ -0.58
CLIP3-203ENST00000586457 PM20D1Q6GTS8 502 aa11.4□□□□□ -0.58
CLIP3-203ENST00000586457 SDE2Q6IQ49 451 aa11.4□□□□□ -0.58
CLIP3-203ENST00000586457 PMF1Q6P1K2 205 aa11.4□□□□□ -0.58
CLIP3-203ENST00000586457 RHBDF2Q6PJF5 856 aa11.4□□□□□ -0.58
CLIP3-203ENST00000586457 TSSK4Q6SA08 328 aa11.4□□□□□ -0.58
CLIP3-203ENST00000586457 MAMSTRQ6ZN01 415 aa11.4□□□□□ -0.58
CLIP3-203ENST00000586457 RBM43Q6ZSC3 357 aaKnown RBP11.4□□□□□ -0.58
CLIP3-203ENST00000586457 TPGS1Q6ZTW0 290 aa11.4□□□□□ -0.58
CLIP3-203ENST00000586457 SCD5Q86SK9 330 aa11.4□□□□□ -0.58
CLIP3-203ENST00000586457 BBS7Q8IWZ6 715 aa11.4□□□□□ -0.58
CLIP3-203ENST00000586457 SCUBE3Q8IX30 993 aa11.4□□□□□ -0.58
CLIP3-203ENST00000586457 NAT16Q8N8M0 369 aa11.4□□□□□ -0.58
CLIP3-203ENST00000586457 RIN3Q8TB24 985 aa11.4□□□□□ -0.58
CLIP3-203ENST00000586457 SLC35F5Q8WV83 523 aa11.4□□□□□ -0.58
CLIP3-203ENST00000586457 IRGQQ8WZA9 623 aa11.4□□□□□ -0.58
CLIP3-203ENST00000586457 EDEM1Q92611 657 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms