RNA–Protein interactions for RNA: ENST00000584083.5

SS18-224, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 663 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-224ENST00000584083 C2orf42Q9NWW7 574 aa21.47■■□□□ 1.03
SS18-224ENST00000584083 CLIC5Q9NZA1 410 aa21.47■■□□□ 1.03
SS18-224ENST00000584083 LSM7Q9UK45 103 aaKnown RBP21.47■■□□□ 1.03
SS18-224ENST00000584083 PTPRZ1P23471 2315 aaPredicted RBP21.47■■□□□ 1.03
SS18-224ENST00000584083 FAM186AA6NE01 2351 aa21.46■■□□□ 1.03
SS18-224ENST00000584083 GOLGA6L22H0YM25 854 aa21.46■■□□□ 1.03
SS18-224ENST00000584083 ZBED1O96006 694 aa21.46■■□□□ 1.03
SS18-224ENST00000584083 SETSIPP0DME0 302 aa21.46■■□□□ 1.03
SS18-224ENST00000584083 KRT5P13647 590 aa21.46■■□□□ 1.03
SS18-224ENST00000584083 BRD2P25440 801 aaKnown RBP21.46■■□□□ 1.03
SS18-224ENST00000584083 PLA2G4AP47712 749 aa21.46■■□□□ 1.03
SS18-224ENST00000584083 GAB4Q2WGN9 574 aa21.46■■□□□ 1.03
SS18-224ENST00000584083 HEATR6Q6AI08 1181 aaKnown RBP21.46■■□□□ 1.03
SS18-224ENST00000584083 LCLAT1Q6UWP7 414 aa21.46■■□□□ 1.03
SS18-224ENST00000584083 RSRC2Q7L4I2 434 aaKnown RBP21.46■■□□□ 1.03
SS18-224ENST00000584083 MIB1Q86YT6 1006 aa21.46■■□□□ 1.03
SS18-224ENST00000584083 FAM114A1Q8IWE2 563 aa21.46■■□□□ 1.03
SS18-224ENST00000584083 IPO9Q96P70 1041 aaKnown RBP21.46■■□□□ 1.03
SS18-224ENST00000584083 CDK5RAP1Q96SZ6 601 aaKnown RBP21.46■■□□□ 1.03
SS18-224ENST00000584083 ULBP1Q9BZM6 244 aa21.46■■□□□ 1.03
SS18-224ENST00000584083 THAP9Q9H5L6 903 aa21.46■■□□□ 1.03
SS18-224ENST00000584083 CHURC1-FNTBB4DL54 471 aa21.45■■□□□ 1.02
SS18-224ENST00000584083 PAPSS2O95340 614 aaPredicted RBP21.45■■□□□ 1.02
SS18-224ENST00000584083 CALCAP01258 141 aa21.45■■□□□ 1.02
SS18-224ENST00000584083 ERCC5P28715 1186 aaPredicted RBP21.45■■□□□ 1.02
SS18-224ENST00000584083 FNTBP49356 437 aa21.45■■□□□ 1.02
SS18-224ENST00000584083 YWHAGP61981 247 aaKnown RBP eCLIP21.45■■□□□ 1.02
SS18-224ENST00000584083 GAD2Q05329 585 aa21.45■■□□□ 1.02
SS18-224ENST00000584083 ADIGQ0VDE8 80 aa21.45■■□□□ 1.02
SS18-224ENST00000584083 STILQ15468 1287 aa21.45■■□□□ 1.02
SS18-224ENST00000584083 CNGA2Q16280 664 aa21.45■■□□□ 1.02
SS18-224ENST00000584083 BTBD8Q5XKL5 378 aa21.45■■□□□ 1.02
SS18-224ENST00000584083 GBP6Q6ZN66 633 aa21.45■■□□□ 1.02
SS18-224ENST00000584083 HTR3DQ70Z44 454 aa21.45■■□□□ 1.02
SS18-224ENST00000584083 SIX6OS1Q8N1H7 587 aa21.45■■□□□ 1.02
SS18-224ENST00000584083 ZNF276Q8N554 614 aa21.45■■□□□ 1.02
SS18-224ENST00000584083 EZH1Q92800 747 aaPredicted RBP21.45■■□□□ 1.02
SS18-224ENST00000584083 RASAL2Q9UJF2 1139 aa21.45■■□□□ 1.02
SS18-224ENST00000584083 WDR3Q9UNX4 943 aaKnown RBP eCLIP21.45■■□□□ 1.02
SS18-224ENST00000584083 SLC8A2Q9UPR5 921 aa21.45■■□□□ 1.02
SS18-224ENST00000584083 KIAA1549LQ6ZVL6 1849 aa21.44■■□□□ 1.02
SS18-224ENST00000584083 K7ESF4 209 aa21.44■■□□□ 1.02
SS18-224ENST00000584083 M0QYV0 167 aa21.44■■□□□ 1.02
SS18-224ENST00000584083 LILRB5O75023 590 aa21.44■■□□□ 1.02
SS18-224ENST00000584083 SLC6A11P48066 632 aa21.44■■□□□ 1.02
SS18-224ENST00000584083 DMWDQ09019 674 aa21.44■■□□□ 1.02
SS18-224ENST00000584083 EFEMP1Q12805 493 aa21.44■■□□□ 1.02
SS18-224ENST00000584083 ANO4Q32M45 955 aa21.44■■□□□ 1.02
SS18-224ENST00000584083 PM20D1Q6GTS8 502 aa21.44■■□□□ 1.02
SS18-224ENST00000584083 TRIM65Q6PJ69 517 aa21.44■■□□□ 1.02
SS18-224ENST00000584083 RPLP0P6Q8NHW5 317 aa21.44■■□□□ 1.02
SS18-224ENST00000584083 CCDC26Q8TAB7 109 aa21.44■■□□□ 1.02
SS18-224ENST00000584083 NDRG1Q92597 394 aaKnown RBP21.44■■□□□ 1.02
SS18-224ENST00000584083 PNKPQ96T60 521 aa21.44■■□□□ 1.02
SS18-224ENST00000584083 SPHK2Q9NRA0 654 aa21.44■■□□□ 1.02
SS18-224ENST00000584083 USP34Q70CQ2 3546 aa21.43■■□□□ 1.02
SS18-224ENST00000584083 LCP1P13796 627 aa21.43■■□□□ 1.02
SS18-224ENST00000584083 SLC9A1P19634 815 aa21.43■■□□□ 1.02
SS18-224ENST00000584083 RGS7P49802 495 aa21.43■■□□□ 1.02
SS18-224ENST00000584083 ZNF132P52740 706 aa21.43■■□□□ 1.02
SS18-224ENST00000584083 MFAP3P55082 362 aa21.43■■□□□ 1.02
SS18-224ENST00000584083 SEC13P55735 322 aa21.43■■□□□ 1.02
SS18-224ENST00000584083 EXOC3L4Q17RC7 722 aa21.43■■□□□ 1.02
SS18-224ENST00000584083 PKDCCQ504Y2 493 aa21.43■■□□□ 1.02
SS18-224ENST00000584083 HSP90AA4PQ58FG1 418 aa21.43■■□□□ 1.02
SS18-224ENST00000584083 ENOSF1Q7L5Y1 443 aa21.43■■□□□ 1.02
SS18-224ENST00000584083 TMEM25Q86YD3 366 aa21.43■■□□□ 1.02
SS18-224ENST00000584083 NAT16Q8N8M0 369 aa21.43■■□□□ 1.02
SS18-224ENST00000584083 GPT2Q8TD30 523 aa21.43■■□□□ 1.02
SS18-224ENST00000584083 KCTD13Q8WZ19 329 aa21.43■■□□□ 1.02
SS18-224ENST00000584083 SECISBP2LQ93073 1101 aaKnown RBP21.43■■□□□ 1.02
SS18-224ENST00000584083 HINFPQ9BQA5 517 aa21.43■■□□□ 1.02
SS18-224ENST00000584083 ZSWIM1Q9BR11 485 aa21.43■■□□□ 1.02
SS18-224ENST00000584083 STRIP2Q9ULQ0 834 aa21.43■■□□□ 1.02
SS18-224ENST00000584083 PALM2-AKAP2B1ALY0 433 aaPredicted RBP21.42■■□□□ 1.02
SS18-224ENST00000584083 APODP05090 189 aa21.42■■□□□ 1.02
SS18-224ENST00000584083 HMBSP08397 361 aa21.42■■□□□ 1.02
SS18-224ENST00000584083 EIF2DP41214 584 aaKnown RBP21.42■■□□□ 1.02
SS18-224ENST00000584083 COG7P83436 770 aa21.42■■□□□ 1.02
SS18-224ENST00000584083 KDSRQ06136 332 aa21.42■■□□□ 1.02
SS18-224ENST00000584083 MAN2A1Q16706 1144 aa21.42■■□□□ 1.02
SS18-224ENST00000584083 ARHGAP44Q17R89 818 aa21.42■■□□□ 1.02
SS18-224ENST00000584083 C2orf27AQ580R0 203 aa21.42■■□□□ 1.02
SS18-224ENST00000584083 GJB7Q6PEY0 223 aa21.42■■□□□ 1.02
SS18-224ENST00000584083 C12orf40Q86WS4 652 aa21.42■■□□□ 1.02
SS18-224ENST00000584083 SUMF1Q8NBK3 374 aa21.42■■□□□ 1.02
SS18-224ENST00000584083 SLC35F5Q8WV83 523 aa21.42■■□□□ 1.02
SS18-224ENST00000584083 FAM81BQ96LP2 452 aa21.42■■□□□ 1.02
SS18-224ENST00000584083 ARHGEF4Q9NR80 690 aa21.42■■□□□ 1.02
SS18-224ENST00000584083 MARCH2Q9P0N8 246 aa21.42■■□□□ 1.02
SS18-224ENST00000584083 CNTN6Q9UQ52 1028 aa21.42■■□□□ 1.02
SS18-224ENST00000584083 GTPBP10A4D1E9 387 aaKnown RBP21.41■■□□□ 1.02
SS18-224ENST00000584083 K7EQS6 105 aa21.41■■□□□ 1.02
SS18-224ENST00000584083 PIK3R2O00459 728 aa21.41■■□□□ 1.02
SS18-224ENST00000584083 HOXC11O43248 304 aaPredicted RBP21.41■■□□□ 1.02
SS18-224ENST00000584083 GREM1O60565 184 aa21.41■■□□□ 1.02
SS18-224ENST00000584083 STC2O76061 302 aa21.41■■□□□ 1.02
SS18-224ENST00000584083 PRKCSHP14314 528 aaPredicted RBP21.41■■□□□ 1.02
SS18-224ENST00000584083 HOXA6P31267 233 aa21.41■■□□□ 1.02
SS18-224ENST00000584083 HOXC13P31276 330 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms