RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 SLC32A1Q9H598 525 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 KRT82Q9NSB4 513 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 GMIPQ9P107 970 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 MBD1Q9UIS9 605 aaPredicted RBP11.22□□□□□ -0.61
RFFL-209ENST00000581265 CFAP45Q9UL16 551 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 NEUROG3Q9Y4Z2 214 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 PCNX2A6NKB5 2137 aa11.21□□□□□ -0.61
RFFL-209ENST00000581265 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.21□□□□□ -0.61
RFFL-209ENST00000581265 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.21□□□□□ -0.61
RFFL-209ENST00000581265 ACTN4O43707 911 aaKnown RBP11.21□□□□□ -0.61
RFFL-209ENST00000581265 HYAL3O43820 417 aaPredicted RBP11.21□□□□□ -0.61
RFFL-209ENST00000581265 TLR5O60602 858 aa11.21□□□□□ -0.61
RFFL-209ENST00000581265 F13A1P00488 732 aa11.21□□□□□ -0.61
RFFL-209ENST00000581265 ASS1P00966 412 aaKnown RBP11.21□□□□□ -0.61
RFFL-209ENST00000581265 DPP6P42658 865 aa11.21□□□□□ -0.61
RFFL-209ENST00000581265 PTGER3P43115 390 aa11.21□□□□□ -0.61
RFFL-209ENST00000581265 PGFP49763 221 aa11.21□□□□□ -0.61
RFFL-209ENST00000581265 NDST1P52848 882 aa11.21□□□□□ -0.61
RFFL-209ENST00000581265 DLG4P78352 724 aa11.21□□□□□ -0.61
RFFL-209ENST00000581265 KDSRQ06136 332 aa11.21□□□□□ -0.61
RFFL-209ENST00000581265 LMAN2Q12907 356 aa11.21□□□□□ -0.61
RFFL-209ENST00000581265 FOXD4L6Q3SYB3 417 aaPredicted RBP11.21□□□□□ -0.61
RFFL-209ENST00000581265 FOXD4L3Q6VB84 417 aaPredicted RBP11.21□□□□□ -0.61
RFFL-209ENST00000581265 SV2AQ7L0J3 742 aa11.21□□□□□ -0.61
RFFL-209ENST00000581265 TRMT11Q7Z4G4 463 aaKnown RBP11.21□□□□□ -0.61
RFFL-209ENST00000581265 TMEFF1Q8IYR6 380 aa11.21□□□□□ -0.61
RFFL-209ENST00000581265 GRAMD1CQ8IYS0 662 aa11.21□□□□□ -0.61
RFFL-209ENST00000581265 CEP57L1Q8IYX8 460 aa11.21□□□□□ -0.61
RFFL-209ENST00000581265 FRMD1Q8N878 549 aa11.21□□□□□ -0.61
RFFL-209ENST00000581265 ZNF513Q8N8E2 541 aaPredicted RBP11.21□□□□□ -0.61
RFFL-209ENST00000581265 C12orf29Q8N999 325 aa11.21□□□□□ -0.61
RFFL-209ENST00000581265 DEFB124Q8NES8 71 aa11.21□□□□□ -0.61
RFFL-209ENST00000581265 SLC2A14Q8TDB8 520 aa11.21□□□□□ -0.61
RFFL-209ENST00000581265 HMGB4Q8WW32 186 aa11.21□□□□□ -0.61
RFFL-209ENST00000581265 WBP2Q969T9 261 aa11.21□□□□□ -0.61
RFFL-209ENST00000581265 ELMO3Q96BJ8 720 aa11.21□□□□□ -0.61
RFFL-209ENST00000581265 PAGE5Q96GU1 130 aa11.21□□□□□ -0.61
RFFL-209ENST00000581265 KLF16Q9BXK1 252 aaPredicted RBP11.21□□□□□ -0.61
RFFL-209ENST00000581265 ZDHHC4Q9NPG8 344 aa11.21□□□□□ -0.61
RFFL-209ENST00000581265 CYLDQ9NQC7 956 aa11.21□□□□□ -0.61
RFFL-209ENST00000581265 TLR8Q9NR97 1041 aaKnown RBP11.21□□□□□ -0.61
RFFL-209ENST00000581265 TMEM74BQ9NUR3 256 aa11.21□□□□□ -0.61
RFFL-209ENST00000581265 BCCIPQ9P287 314 aaKnown RBP eCLIP11.21□□□□□ -0.61
RFFL-209ENST00000581265 SERTAD1Q9UHV2 236 aa11.21□□□□□ -0.61
RFFL-209ENST00000581265 HCN2Q9UL51 889 aa11.21□□□□□ -0.61
RFFL-209ENST00000581265 WASF3Q9UPY6 502 aa11.21□□□□□ -0.61
RFFL-209ENST00000581265 MSRB2Q9Y3D2 182 aa11.21□□□□□ -0.61
RFFL-209ENST00000581265 ASCC3Q8N3C0 2202 aaKnown RBP11.21□□□□□ -0.62
RFFL-209ENST00000581265 PI4KAP42356 2102 aa11.21□□□□□ -0.62
RFFL-209ENST00000581265 TCRBV21S2A2A0A5A6 115 aa11.2□□□□□ -0.62
RFFL-209ENST00000581265 MAPK13O15264 365 aa11.2□□□□□ -0.62
RFFL-209ENST00000581265 TBX18O95935 607 aa11.2□□□□□ -0.62
RFFL-209ENST00000581265 NR3C1P04150 777 aa11.2□□□□□ -0.62
RFFL-209ENST00000581265 MYL1P05976 194 aa11.2□□□□□ -0.62
RFFL-209ENST00000581265 CCDC130P13994 396 aa11.2□□□□□ -0.62
RFFL-209ENST00000581265 NTSR1P30989 418 aa11.2□□□□□ -0.62
RFFL-209ENST00000581265 HOXD12P35452 270 aa11.2□□□□□ -0.62
RFFL-209ENST00000581265 ATP5C1P36542 298 aaKnown RBP11.2□□□□□ -0.62
RFFL-209ENST00000581265 ASPAP45381 313 aa11.2□□□□□ -0.62
RFFL-209ENST00000581265 MAP3K7CLP57077 242 aa11.2□□□□□ -0.62
RFFL-209ENST00000581265 ANO4Q32M45 955 aa11.2□□□□□ -0.62
RFFL-209ENST00000581265 KMT5BQ4FZB7 885 aa11.2□□□□□ -0.62
RFFL-209ENST00000581265 TRIM61Q5EBN2 209 aa11.2□□□□□ -0.62
RFFL-209ENST00000581265 C1orf220Q5T0J3 134 aa11.2□□□□□ -0.62
RFFL-209ENST00000581265 PEAR1Q5VY43 1037 aaPredicted RBP11.2□□□□□ -0.62
RFFL-209ENST00000581265 KLHDC10Q6PID8 442 aa11.2□□□□□ -0.62
RFFL-209ENST00000581265 SLC23A3Q6PIS1 610 aa11.2□□□□□ -0.62
RFFL-209ENST00000581265 SCARA5Q6ZMJ2 495 aa11.2□□□□□ -0.62
RFFL-209ENST00000581265 PGBD3Q8N328 593 aa11.2□□□□□ -0.62
RFFL-209ENST00000581265 TERB1Q8NA31 727 aa11.2□□□□□ -0.62
RFFL-209ENST00000581265 HNRNPABQ99729 332 aaKnown RBP11.2□□□□□ -0.62
RFFL-209ENST00000581265 NUSAP1Q9BXS6 441 aaKnown RBP11.2□□□□□ -0.62
RFFL-209ENST00000581265 NACA2Q9H009 215 aa11.2□□□□□ -0.62
RFFL-209ENST00000581265 EXOC1Q9NV70 894 aa11.2□□□□□ -0.62
RFFL-209ENST00000581265 MARK1Q9P0L2 795 aa11.2□□□□□ -0.62
RFFL-209ENST00000581265 WDR35Q9P2L0 1181 aa11.2□□□□□ -0.62
RFFL-209ENST00000581265 USP25Q9UHP3 1055 aa11.2□□□□□ -0.62
RFFL-209ENST00000581265 PILRBQ9UKJ0 227 aa11.2□□□□□ -0.62
RFFL-209ENST00000581265 SCML2Q9UQR0 700 aa11.2□□□□□ -0.62
RFFL-209ENST00000581265 TRAF3IP3Q9Y228 551 aa11.2□□□□□ -0.62
RFFL-209ENST00000581265 CACNA1EQ15878 2313 aa11.19□□□□□ -0.62
RFFL-209ENST00000581265 LAMA1P25391 3075 aa11.19□□□□□ -0.62
RFFL-209ENST00000581265 A0A1W2PQF6 199 aa11.19□□□□□ -0.62
RFFL-209ENST00000581265 HHLA1C9JL84 531 aa11.19□□□□□ -0.62
RFFL-209ENST00000581265 TRIM24O15164 1050 aa11.19□□□□□ -0.62
RFFL-209ENST00000581265 CACNG3O60359 315 aa11.19□□□□□ -0.62
RFFL-209ENST00000581265 CLSTN1O94985 981 aa11.19□□□□□ -0.62
RFFL-209ENST00000581265 GABRG2P18507 467 aa11.19□□□□□ -0.62
RFFL-209ENST00000581265 CMA1P23946 247 aa11.19□□□□□ -0.62
RFFL-209ENST00000581265 DNM1Q05193 864 aaKnown RBP11.19□□□□□ -0.62
RFFL-209ENST00000581265 INCA1Q0VD86 236 aa11.19□□□□□ -0.62
RFFL-209ENST00000581265 ORC1Q13415 861 aa11.19□□□□□ -0.62
RFFL-209ENST00000581265 COL28A1Q2UY09 1125 aa11.19□□□□□ -0.62
RFFL-209ENST00000581265 C10orf76Q5T2E6 689 aa11.19□□□□□ -0.62
RFFL-209ENST00000581265 LYSMD4Q5XG99 296 aa11.19□□□□□ -0.62
RFFL-209ENST00000581265 SLC36A4Q6YBV0 504 aa11.19□□□□□ -0.62
RFFL-209ENST00000581265 CLEC20AQ6ZU45 233 aa11.19□□□□□ -0.62
RFFL-209ENST00000581265 MIB1Q86YT6 1006 aa11.19□□□□□ -0.62
RFFL-209ENST00000581265 ZNF276Q8N554 614 aa11.19□□□□□ -0.62
RFFL-209ENST00000581265 CD248Q9HCU0 757 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 116.2 ms