RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 TMEM63BQ5T3F8 832 aa7.49□□□□□ -1.21
SS18-214ENST00000580003 KIAA1614Q5VZ46 1190 aa7.49□□□□□ -1.21
SS18-214ENST00000580003 GALNT4Q8N4A0 578 aa7.49□□□□□ -1.21
SS18-214ENST00000580003 OR2C3Q8N628 320 aa7.49□□□□□ -1.21
SS18-214ENST00000580003 DPF1Q92782 380 aa7.49□□□□□ -1.21
SS18-214ENST00000580003 SNX27Q96L92 541 aa7.49□□□□□ -1.21
SS18-214ENST00000580003 CCDC17Q96LX7 622 aa7.49□□□□□ -1.21
SS18-214ENST00000580003 ASB2Q96Q27 587 aa7.49□□□□□ -1.21
SS18-214ENST00000580003 FYTTD1Q96QD9 318 aaKnown RBP7.49□□□□□ -1.21
SS18-214ENST00000580003 MAN2B2Q9Y2E5 1009 aa7.49□□□□□ -1.21
SS18-214ENST00000580003 FRMD4BQ9Y2L6 1034 aa7.49□□□□□ -1.21
SS18-214ENST00000580003 A0A087WZ62 844 aa7.48□□□□□ -1.21
SS18-214ENST00000580003 PRRT4C9JH25 899 aa7.48□□□□□ -1.21
SS18-214ENST00000580003 NCK2O43639 380 aa7.48□□□□□ -1.21
SS18-214ENST00000580003 NHLRC4P0CG21 123 aaPredicted RBP7.48□□□□□ -1.21
SS18-214ENST00000580003 TMEM225BP0DP42 221 aa7.48□□□□□ -1.21
SS18-214ENST00000580003 C4orf46Q504U0 113 aa7.48□□□□□ -1.21
SS18-214ENST00000580003 MRNIPQ6NTE8 343 aa7.48□□□□□ -1.21
SS18-214ENST00000580003 ZNF782Q6ZMW2 699 aaPredicted RBP7.48□□□□□ -1.21
SS18-214ENST00000580003 BCDIN3DQ7Z5W3 292 aaKnown RBP7.48□□□□□ -1.21
SS18-214ENST00000580003 CHSY1Q86X52 802 aa7.48□□□□□ -1.21
SS18-214ENST00000580003 CCDC146Q8IYE0 955 aa7.48□□□□□ -1.21
SS18-214ENST00000580003 ABHD5Q8WTS1 349 aa7.48□□□□□ -1.21
SS18-214ENST00000580003 COL15A1P39059 1388 aa7.47□□□□□ -1.21
SS18-214ENST00000580003 TISP43B9A030 160 aa7.47□□□□□ -1.21
SS18-214ENST00000580003 KCNQ3O43525 872 aa7.47□□□□□ -1.21
SS18-214ENST00000580003 FGF18O76093 207 aa7.47□□□□□ -1.21
SS18-214ENST00000580003 MT-CO3P00414 261 aa7.47□□□□□ -1.21
SS18-214ENST00000580003 CHRM5P08912 532 aaPredicted RBP7.47□□□□□ -1.21
SS18-214ENST00000580003 ADRA1DP25100 572 aa7.47□□□□□ -1.21
SS18-214ENST00000580003 MCM5P33992 734 aa7.47□□□□□ -1.21
SS18-214ENST00000580003 MAP9Q49MG5 647 aa7.47□□□□□ -1.21
SS18-214ENST00000580003 IZUMO3Q5VZ72 239 aa7.47□□□□□ -1.21
SS18-214ENST00000580003 KRT73Q86Y46 540 aa7.47□□□□□ -1.21
SS18-214ENST00000580003 ADAMTS18Q8TE60 1221 aa7.47□□□□□ -1.21
SS18-214ENST00000580003 ZNF566Q969W8 418 aa7.47□□□□□ -1.21
SS18-214ENST00000580003 HS6ST2Q96MM7 605 aa7.47□□□□□ -1.21
SS18-214ENST00000580003 CERS4Q9HA82 394 aa7.47□□□□□ -1.21
SS18-214ENST00000580003 WIPF3A6NGB9 483 aa7.46□□□□□ -1.22
SS18-214ENST00000580003 BTBD19C9JJ37 291 aa7.46□□□□□ -1.22
SS18-214ENST00000580003 USP1O94782 785 aa7.46□□□□□ -1.22
SS18-214ENST00000580003 WDR47O94967 919 aa7.46□□□□□ -1.22
SS18-214ENST00000580003 TXNL4AP83876 142 aaKnown RBP7.46□□□□□ -1.22
SS18-214ENST00000580003 FAM187BQ17R55 369 aa7.46□□□□□ -1.22
SS18-214ENST00000580003 EEF1AKMT2Q5JPI9 291 aaKnown RBP7.46□□□□□ -1.22
SS18-214ENST00000580003 TMEM65Q6PI78 240 aa7.46□□□□□ -1.22
SS18-214ENST00000580003 FBXO38Q6PIJ6 1188 aa7.46□□□□□ -1.22
SS18-214ENST00000580003 NOL8Q76FK4 1167 aaKnown RBP7.46□□□□□ -1.22
SS18-214ENST00000580003 SRLQ86TD4 932 aa7.46□□□□□ -1.22
SS18-214ENST00000580003 P3H2Q8IVL5 708 aa7.46□□□□□ -1.22
SS18-214ENST00000580003 CCDC28AQ8IWP9 274 aa7.46□□□□□ -1.22
SS18-214ENST00000580003 PNPLA1Q8N8W4 532 aa7.46□□□□□ -1.22
SS18-214ENST00000580003 DDB2Q92466 427 aa7.46□□□□□ -1.22
SS18-214ENST00000580003 RITA1Q96K30 269 aa7.46□□□□□ -1.22
SS18-214ENST00000580003 PCDHAC1Q9H158 963 aa7.46□□□□□ -1.22
SS18-214ENST00000580003 FLRT1Q9NZU1 646 aa7.46□□□□□ -1.22
SS18-214ENST00000580003 ZMYND8Q9ULU4 1186 aaPredicted RBP7.46□□□□□ -1.22
SS18-214ENST00000580003 FNDC1Q4ZHG4 1894 aaPredicted RBP7.45□□□□□ -1.22
SS18-214ENST00000580003 NDST3O95803 873 aa7.45□□□□□ -1.22
SS18-214ENST00000580003 IFIT2P09913 472 aaKnown RBP7.45□□□□□ -1.22
SS18-214ENST00000580003 CYP2D6P10635 497 aa7.45□□□□□ -1.22
SS18-214ENST00000580003 CERS1P27544 350 aa7.45□□□□□ -1.22
SS18-214ENST00000580003 SLC5A2P31639 672 aa7.45□□□□□ -1.22
SS18-214ENST00000580003 HTR7P34969 479 aa7.45□□□□□ -1.22
SS18-214ENST00000580003 SLC35G1Q2M3R5 365 aa7.45□□□□□ -1.22
SS18-214ENST00000580003 COLEC12Q5KU26 742 aa7.45□□□□□ -1.22
SS18-214ENST00000580003 ABLIM2Q6H8Q1 611 aa7.45□□□□□ -1.22
SS18-214ENST00000580003 KIAA0408Q6ZU52 694 aa7.45□□□□□ -1.22
SS18-214ENST00000580003 SRRM1Q8IYB3 904 aaKnown RBP7.45□□□□□ -1.22
SS18-214ENST00000580003 C12orf76Q8N812 135 aaPredicted RBP7.45□□□□□ -1.22
SS18-214ENST00000580003 ACRBPQ8NEB7 543 aa7.45□□□□□ -1.22
SS18-214ENST00000580003 MAFAQ8NHW3 353 aaPredicted RBP7.45□□□□□ -1.22
SS18-214ENST00000580003 SUN3Q8TAQ9 357 aa7.45□□□□□ -1.22
SS18-214ENST00000580003 SEMA4CQ9C0C4 833 aa7.45□□□□□ -1.22
SS18-214ENST00000580003 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.45□□□□□ -1.22
SS18-214ENST00000580003 USP29Q9HBJ7 922 aa7.45□□□□□ -1.22
SS18-214ENST00000580003 ASIC5Q9NY37 505 aa7.45□□□□□ -1.22
SS18-214ENST00000580003 TCRBV5S1A1TA0A578 114 aa7.44□□□□□ -1.22
SS18-214ENST00000580003 APEHP13798 732 aaKnown RBP7.44□□□□□ -1.22
SS18-214ENST00000580003 EEF1GP26641 437 aaKnown RBP7.44□□□□□ -1.22
SS18-214ENST00000580003 GABRB3P28472 473 aa7.44□□□□□ -1.22
SS18-214ENST00000580003 DGKQP52824 942 aa7.44□□□□□ -1.22
SS18-214ENST00000580003 DEUP1Q05D60 604 aa7.44□□□□□ -1.22
SS18-214ENST00000580003 FOXF2Q12947 444 aa7.44□□□□□ -1.22
SS18-214ENST00000580003 FAM186BQ8IYM0 893 aa7.44□□□□□ -1.22
SS18-214ENST00000580003 GRAMD1AQ96CP6 724 aa7.44□□□□□ -1.22
SS18-214ENST00000580003 ELAC2Q9BQ52 826 aaKnown RBP7.44□□□□□ -1.22
SS18-214ENST00000580003 CINPQ9BW66 212 aaPredicted RBP7.44□□□□□ -1.22
SS18-214ENST00000580003 RGL1Q9NZL6 768 aa7.44□□□□□ -1.22
SS18-214ENST00000580003 ASAP1Q9ULH1 1129 aa7.44□□□□□ -1.22
SS18-214ENST00000580003 FAM234BA2RU67 622 aa7.43□□□□□ -1.22
SS18-214ENST00000580003 TMEM232C9JQI7 657 aa7.43□□□□□ -1.22
SS18-214ENST00000580003 ZSCAN9O15535 394 aaPredicted RBP7.43□□□□□ -1.22
SS18-214ENST00000580003 ARP10275 920 aa7.43□□□□□ -1.22
SS18-214ENST00000580003 EGR1P18146 543 aa7.43□□□□□ -1.22
SS18-214ENST00000580003 MST1P26927 711 aa7.43□□□□□ -1.22
SS18-214ENST00000580003 CFHR3Q02985 330 aa7.43□□□□□ -1.22
SS18-214ENST00000580003 ACOX1Q15067 660 aa7.43□□□□□ -1.22
SS18-214ENST00000580003 SRSF7Q16629 238 aaKnown RBP eCLIP7.43□□□□□ -1.22
SS18-214ENST00000580003 SLC5A9Q2M3M2 681 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms