RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 SH3BP1Q9Y3L3 701 aa19.24■□□□□ 0.67
CLK3-227ENST00000570296 TEP1Q99973 2627 aaKnown RBP19.23■□□□□ 0.67
CLK3-227ENST00000570296 H0Y8X5 98 aa19.23■□□□□ 0.67
CLK3-227ENST00000570296 DFNA5O60443 496 aa19.23■□□□□ 0.67
CLK3-227ENST00000570296 ORC1Q13415 861 aa19.23■□□□□ 0.67
CLK3-227ENST00000570296 NUMA1Q14980 2115 aa19.23■□□□□ 0.67
CLK3-227ENST00000570296 MAPRE1Q15691 268 aaKnown RBP19.23■□□□□ 0.67
CLK3-227ENST00000570296 USP49Q70CQ1 688 aa19.23■□□□□ 0.67
CLK3-227ENST00000570296 BBS7Q8IWZ6 715 aa19.23■□□□□ 0.67
CLK3-227ENST00000570296 ADGRF2Q8IZF7 708 aa19.23■□□□□ 0.67
CLK3-227ENST00000570296 TTC9Q92623 222 aa19.23■□□□□ 0.67
CLK3-227ENST00000570296 MYLPFQ96A32 169 aa19.23■□□□□ 0.67
CLK3-227ENST00000570296 SLITRK1Q96PX8 696 aa19.23■□□□□ 0.67
CLK3-227ENST00000570296 MKRN2Q9H000 416 aaKnown RBP19.23■□□□□ 0.67
CLK3-227ENST00000570296 IL17BQ9UHF5 180 aa19.23■□□□□ 0.67
CLK3-227ENST00000570296 NOTCH2Q04721 2471 aa19.23■□□□□ 0.67
CLK3-227ENST00000570296 CKAP5Q14008 2032 aa19.22■□□□□ 0.67
CLK3-227ENST00000570296 EPB41L2O43491 1005 aaKnown RBP19.22■□□□□ 0.67
CLK3-227ENST00000570296 IL18RAPO95256 599 aa19.22■□□□□ 0.67
CLK3-227ENST00000570296 BDNFP23560 247 aa19.22■□□□□ 0.67
CLK3-227ENST00000570296 POLR2BP30876 1174 aaKnown RBP19.22■□□□□ 0.67
CLK3-227ENST00000570296 FOSBP53539 338 aa19.22■□□□□ 0.67
CLK3-227ENST00000570296 TAF10Q12962 218 aa19.22■□□□□ 0.67
CLK3-227ENST00000570296 TTC38Q5R3I4 469 aa19.22■□□□□ 0.67
CLK3-227ENST00000570296 TDRD10Q5VZ19 366 aaKnown RBP19.22■□□□□ 0.67
CLK3-227ENST00000570296 FBXL19Q6PCT2 694 aa19.22■□□□□ 0.67
CLK3-227ENST00000570296 CACTIN-AS1Q8N1I8 211 aa19.22■□□□□ 0.67
CLK3-227ENST00000570296 LRRC52Q8N7C0 313 aa19.22■□□□□ 0.67
CLK3-227ENST00000570296 SYT2Q8N9I0 419 aaPredicted RBP19.22■□□□□ 0.67
CLK3-227ENST00000570296 KRI1Q8N9T8 703 aaKnown RBP19.22■□□□□ 0.67
CLK3-227ENST00000570296 ZNF248Q8NDW4 579 aa19.22■□□□□ 0.67
CLK3-227ENST00000570296 STON1Q9Y6Q2 735 aa19.22■□□□□ 0.67
CLK3-227ENST00000570296 WASH3PC4AMC7 463 aa19.21■□□□□ 0.67
CLK3-227ENST00000570296 LAD1O00515 517 aa19.21■□□□□ 0.67
CLK3-227ENST00000570296 NPC1O15118 1278 aa19.21■□□□□ 0.67
CLK3-227ENST00000570296 HCRTO43612 131 aa19.21■□□□□ 0.67
CLK3-227ENST00000570296 COLEC12Q5KU26 742 aa19.21■□□□□ 0.67
CLK3-227ENST00000570296 ARHGAP40Q5TG30 622 aa19.21■□□□□ 0.67
CLK3-227ENST00000570296 ADALQ6DHV7 355 aa19.21■□□□□ 0.67
CLK3-227ENST00000570296 KCTD17Q8N5Z5 321 aa19.21■□□□□ 0.67
CLK3-227ENST00000570296 SNX19Q92543 992 aa19.21■□□□□ 0.67
CLK3-227ENST00000570296 SIPA1Q96FS4 1042 aa19.21■□□□□ 0.67
CLK3-227ENST00000570296 C8orf48Q96LL4 319 aa19.21■□□□□ 0.67
CLK3-227ENST00000570296 SYT15Q9BQS2 421 aa19.21■□□□□ 0.67
CLK3-227ENST00000570296 TM9SF3Q9HD45 589 aa19.21■□□□□ 0.67
CLK3-227ENST00000570296 WDR35Q9P2L0 1181 aa19.21■□□□□ 0.67
CLK3-227ENST00000570296 NXF1Q9UBU9 619 aaKnown RBP19.21■□□□□ 0.67
CLK3-227ENST00000570296 CDH9Q9ULB4 789 aa19.21■□□□□ 0.67
CLK3-227ENST00000570296 AGAP1Q9UPQ3 857 aa19.21■□□□□ 0.67
CLK3-227ENST00000570296 SLCO1B1Q9Y6L6 691 aa19.21■□□□□ 0.67
CLK3-227ENST00000570296 PP2D1A8MPX8 630 aa19.2■□□□□ 0.66
CLK3-227ENST00000570296 K7ENM7 598 aa19.2■□□□□ 0.66
CLK3-227ENST00000570296 KCNK3O14649 394 aa19.2■□□□□ 0.66
CLK3-227ENST00000570296 COCHO43405 550 aa19.2■□□□□ 0.66
CLK3-227ENST00000570296 ATP2C2O75185 946 aa19.2■□□□□ 0.66
CLK3-227ENST00000570296 LDOC1O95751 146 aaPredicted RBP19.2■□□□□ 0.66
CLK3-227ENST00000570296 ABCD1P33897 745 aa19.2■□□□□ 0.66
CLK3-227ENST00000570296 CTSKP43235 329 aa19.2■□□□□ 0.66
CLK3-227ENST00000570296 ACADVLP49748 655 aa19.2■□□□□ 0.66
CLK3-227ENST00000570296 SLFN12LQ6IEE8 588 aa19.2■□□□□ 0.66
CLK3-227ENST00000570296 TMPRSS6Q8IU80 811 aa19.2■□□□□ 0.66
CLK3-227ENST00000570296 PDZD8Q8NEN9 1154 aa19.2■□□□□ 0.66
CLK3-227ENST00000570296 SNRNP27Q8WVK2 155 aaKnown RBP19.2■□□□□ 0.66
CLK3-227ENST00000570296 PRCCQ92733 491 aaPredicted RBP19.2■□□□□ 0.66
CLK3-227ENST00000570296 CNDP2Q96KP4 475 aaKnown RBP19.2■□□□□ 0.66
CLK3-227ENST00000570296 MMTAG2Q9BU76 263 aaKnown RBP19.2■□□□□ 0.66
CLK3-227ENST00000570296 CPNE5Q9HCH3 593 aa19.2■□□□□ 0.66
CLK3-227ENST00000570296 MARK1Q9P0L2 795 aa19.2■□□□□ 0.66
CLK3-227ENST00000570296 AGO2Q9UKV8 859 aaKnown RBP19.2■□□□□ 0.66
CLK3-227ENST00000570296 SNX9Q9Y5X1 595 aa19.2■□□□□ 0.66
CLK3-227ENST00000570296 BOD1L1Q8NFC6 3051 aa19.19■□□□□ 0.66
CLK3-227ENST00000570296 NEDD8-MDP1E9PL57 170 aa19.19■□□□□ 0.66
CLK3-227ENST00000570296 F8VP50 259 aa19.19■□□□□ 0.66
CLK3-227ENST00000570296 ITGB3P05106 788 aa19.19■□□□□ 0.66
CLK3-227ENST00000570296 TYRP14679 529 aa19.19■□□□□ 0.66
CLK3-227ENST00000570296 ADSSP30520 456 aa19.19■□□□□ 0.66
CLK3-227ENST00000570296 TRAPPC10P48553 1259 aa19.19■□□□□ 0.66
CLK3-227ENST00000570296 SLC12A3P55017 1021 aa19.19■□□□□ 0.66
CLK3-227ENST00000570296 PCBP4P57723 403 aaKnown RBP19.19■□□□□ 0.66
CLK3-227ENST00000570296 IL9RQ01113 521 aa19.19■□□□□ 0.66
CLK3-227ENST00000570296 SOWAHAQ2M3V2 549 aa19.19■□□□□ 0.66
CLK3-227ENST00000570296 PRICKLE2Q7Z3G6 844 aa19.19■□□□□ 0.66
CLK3-227ENST00000570296 C1orf127Q8N9H9 656 aa19.19■□□□□ 0.66
CLK3-227ENST00000570296 OVCA2Q8WZ82 227 aa19.19■□□□□ 0.66
CLK3-227ENST00000570296 BBS2Q9BXC9 721 aa19.19■□□□□ 0.66
CLK3-227ENST00000570296 CRTAC1Q9NQ79 661 aa19.19■□□□□ 0.66
CLK3-227ENST00000570296 ODF2LQ9ULJ1 636 aa19.19■□□□□ 0.66
CLK3-227ENST00000570296 ZBTB32Q9Y2Y4 487 aaPredicted RBP19.19■□□□□ 0.66
CLK3-227ENST00000570296 STYXL1Q9Y6J8 313 aa19.19■□□□□ 0.66
CLK3-227ENST00000570296 A0A1B0GTQ1 180 aa19.18■□□□□ 0.66
CLK3-227ENST00000570296 ACADMP11310 421 aa19.18■□□□□ 0.66
CLK3-227ENST00000570296 DGKGP49619 791 aa19.18■□□□□ 0.66
CLK3-227ENST00000570296 PSMC1P62191 440 aaKnown RBP19.18■□□□□ 0.66
CLK3-227ENST00000570296 CYP27A1Q02318 531 aa19.18■□□□□ 0.66
CLK3-227ENST00000570296 DNAJC3Q13217 504 aa19.18■□□□□ 0.66
CLK3-227ENST00000570296 ILKQ13418 452 aa19.18■□□□□ 0.66
CLK3-227ENST00000570296 ENPP2Q13822 863 aa19.18■□□□□ 0.66
CLK3-227ENST00000570296 HECTD3Q5T447 861 aa19.18■□□□□ 0.66
CLK3-227ENST00000570296 CRELD2Q6UXH1 353 aaPredicted RBP19.18■□□□□ 0.66
CLK3-227ENST00000570296 DPH6Q7L8W6 267 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms