RNA–Protein interactions for RNA: ENST00000568034.1

COMMD4-222, Transcript of COMM domain containing 4, human

TSL 5

Gene COMMD4, Length 1,085 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-222	ENST00000568034	TCRBV5S1A1T	A0A578	114 aa		18.86	■□□□□ 0.61
COMMD4-222	ENST00000568034	ANHX	E9PGG2	379 aa		18.86	■□□□□ 0.61
COMMD4-222	ENST00000568034	SART1	O43290	800 aa	Known RBP	18.86	■□□□□ 0.61
COMMD4-222	ENST00000568034	TBX18	O95935	607 aa		18.86	■□□□□ 0.61
COMMD4-222	ENST00000568034	LTF	P02788	710 aa		18.86	■□□□□ 0.61
COMMD4-222	ENST00000568034	GZMA	P12544	262 aa		18.86	■□□□□ 0.61
COMMD4-222	ENST00000568034	ZXDB	P98169	803 aa		18.86	■□□□□ 0.61
COMMD4-222	ENST00000568034	SLC6A3	Q01959	620 aa		18.86	■□□□□ 0.61
COMMD4-222	ENST00000568034	C1QBP	Q07021	282 aa	Known RBP	18.86	■□□□□ 0.61
COMMD4-222	ENST00000568034	OR6B2	Q6IFH4	312 aa		18.86	■□□□□ 0.61
COMMD4-222	ENST00000568034	SLC26A9	Q7LBE3	791 aa		18.86	■□□□□ 0.61
COMMD4-222	ENST00000568034	ZDHHC17	Q8IUH5	632 aa		18.86	■□□□□ 0.61
COMMD4-222	ENST00000568034	ARID3B	Q8IVW6	561 aa	Predicted RBP	18.86	■□□□□ 0.61
COMMD4-222	ENST00000568034	ST13P5	Q8NFI4	369 aa	Predicted RBP	18.86	■□□□□ 0.61
COMMD4-222	ENST00000568034	RIN3	Q8TB24	985 aa		18.86	■□□□□ 0.61
COMMD4-222	ENST00000568034	SMARCD2	Q92925	531 aa		18.86	■□□□□ 0.61
COMMD4-222	ENST00000568034	RSPRY1	Q96DX4	576 aa		18.86	■□□□□ 0.61
COMMD4-222	ENST00000568034	ZFR	Q96KR1	1074 aa	Known RBP	18.86	■□□□□ 0.61
COMMD4-222	ENST00000568034	SMG9	Q9H0W8	520 aa	Known RBP	18.86	■□□□□ 0.61
COMMD4-222	ENST00000568034	SYNC	Q9H7C4	482 aa		18.86	■□□□□ 0.61
COMMD4-222	ENST00000568034	TRPV4	Q9HBA0	871 aa		18.86	■□□□□ 0.61
COMMD4-222	ENST00000568034	ZNHIT6	Q9NWK9	470 aa	Known RBP	18.86	■□□□□ 0.61
COMMD4-222	ENST00000568034	ASNSD1	Q9NWL6	643 aa		18.86	■□□□□ 0.61
COMMD4-222	ENST00000568034	ADAM22	Q9P0K1	906 aa		18.86	■□□□□ 0.61
COMMD4-222	ENST00000568034	NUDT5	Q9UKK9	219 aa		18.86	■□□□□ 0.61
COMMD4-222	ENST00000568034	HELZ	P42694	1942 aa	Known RBP	18.85	■□□□□ 0.61
COMMD4-222	ENST00000568034	TRAV19	A0A0A6YYK7	116 aa		18.85	■□□□□ 0.61
COMMD4-222	ENST00000568034	TMCO5B	A8MYB1	307 aa		18.85	■□□□□ 0.61
COMMD4-222	ENST00000568034	MDM4	O15151	490 aa		18.85	■□□□□ 0.61
COMMD4-222	ENST00000568034	SCNN1A	P37088	669 aa		18.85	■□□□□ 0.61
COMMD4-222	ENST00000568034	SLC7A9	P82251	487 aa		18.85	■□□□□ 0.61
COMMD4-222	ENST00000568034	HTR4	Q13639	388 aa		18.85	■□□□□ 0.61
COMMD4-222	ENST00000568034	TSR1	Q2NL82	804 aa	Known RBP	18.85	■□□□□ 0.61
COMMD4-222	ENST00000568034	KLHDC10	Q6PID8	442 aa		18.85	■□□□□ 0.61
COMMD4-222	ENST00000568034	PARM1	Q6UWI2	310 aa		18.85	■□□□□ 0.61
COMMD4-222	ENST00000568034	BEND5	Q7L4P6	421 aa		18.85	■□□□□ 0.61
COMMD4-222	ENST00000568034	MCOLN2	Q8IZK6	566 aa		18.85	■□□□□ 0.61
COMMD4-222	ENST00000568034	EDEM1	Q92611	657 aa		18.85	■□□□□ 0.61
COMMD4-222	ENST00000568034	FGF14	Q92915	247 aa		18.85	■□□□□ 0.61
COMMD4-222	ENST00000568034	USP13	Q92995	863 aa	Predicted RBP	18.85	■□□□□ 0.61
COMMD4-222	ENST00000568034	SLC2A13	Q96QE2	648 aa		18.85	■□□□□ 0.61
COMMD4-222	ENST00000568034	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	18.85	■□□□□ 0.61
COMMD4-222	ENST00000568034	ISCU	Q9H1K1	167 aa		18.85	■□□□□ 0.61
COMMD4-222	ENST00000568034	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	18.85	■□□□□ 0.61
COMMD4-222	ENST00000568034	CCL26	Q9Y258	94 aa		18.85	■□□□□ 0.61
COMMD4-222	ENST00000568034	DLL1	O00548	723 aa		18.84	■□□□□ 0.61
COMMD4-222	ENST00000568034	RTN2	O75298	545 aa		18.84	■□□□□ 0.61
COMMD4-222	ENST00000568034	CKM	P06732	381 aa		18.84	■□□□□ 0.61
COMMD4-222	ENST00000568034	GLI1	P08151	1106 aa		18.84	■□□□□ 0.61
COMMD4-222	ENST00000568034	HDC	P19113	662 aa		18.84	■□□□□ 0.61
COMMD4-222	ENST00000568034	VIPR2	P41587	438 aa		18.84	■□□□□ 0.61
COMMD4-222	ENST00000568034	SNX16	P57768	344 aa		18.84	■□□□□ 0.61
COMMD4-222	ENST00000568034	GFPT1	Q06210	699 aa	Predicted RBP	18.84	■□□□□ 0.61
COMMD4-222	ENST00000568034	ZNF268	Q14587	947 aa	Predicted RBP	18.84	■□□□□ 0.61
COMMD4-222	ENST00000568034	SLC18A3	Q16572	532 aa		18.84	■□□□□ 0.61
COMMD4-222	ENST00000568034	TJAP1	Q5JTD0	557 aa		18.84	■□□□□ 0.61
COMMD4-222	ENST00000568034	BTBD8	Q5XKL5	378 aa		18.84	■□□□□ 0.61
COMMD4-222	ENST00000568034	TANGO2	Q6ICL3	276 aa		18.84	■□□□□ 0.61
COMMD4-222	ENST00000568034	MSANTD2	Q6P1R3	559 aa		18.84	■□□□□ 0.61
COMMD4-222	ENST00000568034	TOGARAM2	Q6ZUX3	1019 aa		18.84	■□□□□ 0.61
COMMD4-222	ENST00000568034	PHLDB2	Q86SQ0	1253 aa		18.84	■□□□□ 0.61
COMMD4-222	ENST00000568034	VPS36	Q86VN1	386 aa		18.84	■□□□□ 0.61
COMMD4-222	ENST00000568034	TMEM139	Q8IV31	216 aa		18.84	■□□□□ 0.61
COMMD4-222	ENST00000568034	PLCD3	Q8N3E9	789 aa		18.84	■□□□□ 0.61
COMMD4-222	ENST00000568034	MSANTD4	Q8NCY6	345 aa		18.84	■□□□□ 0.61
COMMD4-222	ENST00000568034	FAM149B1	Q96BN6	582 aa		18.84	■□□□□ 0.61
COMMD4-222	ENST00000568034	LRRC3B	Q96PB8	259 aa		18.84	■□□□□ 0.61
COMMD4-222	ENST00000568034	RPP25	Q9BUL9	199 aa	Known RBP	18.84	■□□□□ 0.61
COMMD4-222	ENST00000568034	ABCC13	Q9NSE7	274 aa		18.84	■□□□□ 0.61
COMMD4-222	ENST00000568034	ARHGAP26	Q9UNA1	814 aa		18.84	■□□□□ 0.61
COMMD4-222	ENST00000568034	HSF2BP	O75031	334 aa		18.83	■□□□□ 0.6
COMMD4-222	ENST00000568034	DAB1	O75553	588 aa		18.83	■□□□□ 0.6
COMMD4-222	ENST00000568034	GRAP2	O75791	330 aa		18.83	■□□□□ 0.6
COMMD4-222	ENST00000568034	GJB6	O95452	261 aa		18.83	■□□□□ 0.6
COMMD4-222	ENST00000568034	FTL	P02792	175 aa	Predicted RBP	18.83	■□□□□ 0.6
COMMD4-222	ENST00000568034	CALB1	P05937	261 aa		18.83	■□□□□ 0.6
COMMD4-222	ENST00000568034	RALA	P11233	206 aa		18.83	■□□□□ 0.6
COMMD4-222	ENST00000568034	RRM1	P23921	792 aa		18.83	■□□□□ 0.6
COMMD4-222	ENST00000568034	AVPR1A	P37288	418 aa		18.83	■□□□□ 0.6
COMMD4-222	ENST00000568034	USP4	Q13107	963 aa		18.83	■□□□□ 0.6
COMMD4-222	ENST00000568034	EFHC1	Q5JVL4	640 aa		18.83	■□□□□ 0.6
COMMD4-222	ENST00000568034	FAM102A	Q5T9C2	384 aa	Predicted RBP	18.83	■□□□□ 0.6
COMMD4-222	ENST00000568034	SYPL2	Q5VXT5	272 aa		18.83	■□□□□ 0.6
COMMD4-222	ENST00000568034	TRNP1	Q6NT89	227 aa		18.83	■□□□□ 0.6
COMMD4-222	ENST00000568034	PPP1R2P3	Q6NXS1	205 aa		18.83	■□□□□ 0.6
COMMD4-222	ENST00000568034	ALKBH5	Q6P6C2	394 aa	Known RBP	18.83	■□□□□ 0.6
COMMD4-222	ENST00000568034	ADAMTS19	Q8TE59	1207 aa		18.83	■□□□□ 0.6
COMMD4-222	ENST00000568034	NECAB3	Q96P71	396 aa	Predicted RBP	18.83	■□□□□ 0.6
COMMD4-222	ENST00000568034	PLA2G2F	Q9BZM2	168 aa		18.83	■□□□□ 0.6
COMMD4-222	ENST00000568034	POPDC2	Q9HBU9	364 aa		18.83	■□□□□ 0.6
COMMD4-222	ENST00000568034	TDP1	Q9NUW8	608 aa		18.83	■□□□□ 0.6
COMMD4-222	ENST00000568034	TMEM59L	Q9UK28	342 aa		18.83	■□□□□ 0.6
COMMD4-222	ENST00000568034	STRIP2	Q9ULQ0	834 aa		18.83	■□□□□ 0.6
COMMD4-222	ENST00000568034	NAALADL1	Q9UQQ1	740 aa		18.83	■□□□□ 0.6
COMMD4-222	ENST00000568034	CPQ	Q9Y646	472 aa		18.83	■□□□□ 0.6
COMMD4-222	ENST00000568034	NUMBL	Q9Y6R0	609 aa		18.83	■□□□□ 0.6
COMMD4-222	ENST00000568034	KIF26A	Q9ULI4	1882 aa	Predicted RBP	18.83	■□□□□ 0.6
COMMD4-222	ENST00000568034	VCAN	P13611	3396 aa		18.82	■□□□□ 0.6
COMMD4-222	ENST00000568034	GOLGA8S	H3BPF8	625 aa		18.82	■□□□□ 0.6
COMMD4-222	ENST00000568034	ZNF263	O14978	683 aa		18.82	■□□□□ 0.6

Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms