RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 TMEM8AQ9HCN3 771 aa16.98■□□□□ 0.31
CLN3-229ENST00000567963 PNPLA8Q9NP80 782 aa16.98■□□□□ 0.31
CLN3-229ENST00000567963 CYLDQ9NQC7 956 aa16.98■□□□□ 0.31
CLN3-229ENST00000567963 OSER1Q9NX31 292 aa16.98■□□□□ 0.31
CLN3-229ENST00000567963 THADAQ6YHU6 1953 aa16.97■□□□□ 0.31
CLN3-229ENST00000567963 TBC1D3BA6NDS4 549 aa16.97■□□□□ 0.31
CLN3-229ENST00000567963 CILPO75339 1184 aa16.97■□□□□ 0.31
CLN3-229ENST00000567963 TULP3O75386 442 aa16.97■□□□□ 0.31
CLN3-229ENST00000567963 ALDH1A2O94788 518 aa16.97■□□□□ 0.31
CLN3-229ENST00000567963 CAVIN2O95810 425 aa16.97■□□□□ 0.31
CLN3-229ENST00000567963 CD58P19256 250 aa16.97■□□□□ 0.31
CLN3-229ENST00000567963 ACO1P21399 889 aaKnown RBP16.97■□□□□ 0.31
CLN3-229ENST00000567963 ATP5C1P36542 298 aaKnown RBP16.97■□□□□ 0.31
CLN3-229ENST00000567963 ANO4Q32M45 955 aa16.97■□□□□ 0.31
CLN3-229ENST00000567963 PREPLQ4J6C6 727 aaPredicted RBP16.97■□□□□ 0.31
CLN3-229ENST00000567963 EOGTQ5NDL2 527 aa16.97■□□□□ 0.31
CLN3-229ENST00000567963 TCEAL6Q6IPX3 200 aa16.97■□□□□ 0.31
CLN3-229ENST00000567963 TTC30AQ86WT1 665 aa16.97■□□□□ 0.31
CLN3-229ENST00000567963 CCDC150Q8NCX0 1101 aa16.97■□□□□ 0.31
CLN3-229ENST00000567963 OLIG1Q8TAK6 271 aa16.97■□□□□ 0.31
CLN3-229ENST00000567963 TCEAL3Q969E4 200 aa16.97■□□□□ 0.31
CLN3-229ENST00000567963 CNTNAP3BQ96NU0 1288 aa16.97■□□□□ 0.31
CLN3-229ENST00000567963 CNTNAP3Q9BZ76 1288 aa16.97■□□□□ 0.31
CLN3-229ENST00000567963 NIF3L1Q9GZT8 377 aa16.97■□□□□ 0.31
CLN3-229ENST00000567963 MMRN2Q9H8L6 949 aa16.97■□□□□ 0.31
CLN3-229ENST00000567963 POLMQ9NP87 494 aaPredicted RBP16.97■□□□□ 0.31
CLN3-229ENST00000567963 ZDHHC4Q9NPG8 344 aa16.97■□□□□ 0.31
CLN3-229ENST00000567963 DEC1Q9P2X7 70 aa16.97■□□□□ 0.31
CLN3-229ENST00000567963 PCDHA5Q9Y5H7 936 aa16.97■□□□□ 0.31
CLN3-229ENST00000567963 MYO18AQ92614 2054 aaKnown RBP16.96■□□□□ 0.31
CLN3-229ENST00000567963 NUP205Q92621 2012 aa16.96■□□□□ 0.31
CLN3-229ENST00000567963 CYP26A1O43174 497 aa16.96■□□□□ 0.31
CLN3-229ENST00000567963 ADAM23O75077 832 aa16.96■□□□□ 0.31
CLN3-229ENST00000567963 BCKDHBP21953 392 aa16.96■□□□□ 0.31
CLN3-229ENST00000567963 GTF2H1P32780 548 aa16.96■□□□□ 0.31
CLN3-229ENST00000567963 EDRF1Q3B7T1 1238 aa16.96■□□□□ 0.31
CLN3-229ENST00000567963 KRT39Q6A163 491 aa16.96■□□□□ 0.31
CLN3-229ENST00000567963 KCNV2Q8TDN2 545 aa16.96■□□□□ 0.31
CLN3-229ENST00000567963 JAKMIP2Q96AA8 810 aa16.96■□□□□ 0.31
CLN3-229ENST00000567963 NMUR1Q9HB89 426 aa16.96■□□□□ 0.31
CLN3-229ENST00000567963 GDPD2Q9HCC8 539 aa16.96■□□□□ 0.31
CLN3-229ENST00000567963 KIF11P52732 1056 aa16.95■□□□□ 0.3
CLN3-229ENST00000567963 PPP1R26Q5T8A7 1209 aaPredicted RBP16.95■□□□□ 0.3
CLN3-229ENST00000567963 KLHDC10Q6PID8 442 aa16.95■□□□□ 0.3
CLN3-229ENST00000567963 NUDT18Q6ZVK8 323 aa16.95■□□□□ 0.3
CLN3-229ENST00000567963 SMYD4Q8IYR2 804 aaPredicted RBP16.95■□□□□ 0.3
CLN3-229ENST00000567963 EEF2KMTQ96G04 330 aa16.95■□□□□ 0.3
CLN3-229ENST00000567963 FAXDC2Q96IV6 333 aa16.95■□□□□ 0.3
CLN3-229ENST00000567963 DUSP16Q9BY84 665 aa16.95■□□□□ 0.3
CLN3-229ENST00000567963 DNAI2Q9GZS0 605 aa16.95■□□□□ 0.3
CLN3-229ENST00000567963 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.95■□□□□ 0.3
CLN3-229ENST00000567963 A0A1W2PQH9 124 aa16.94■□□□□ 0.3
CLN3-229ENST00000567963 TRIM24O15164 1050 aa16.94■□□□□ 0.3
CLN3-229ENST00000567963 RARGP13631 454 aa16.94■□□□□ 0.3
CLN3-229ENST00000567963 P2RY2P41231 377 aa16.94■□□□□ 0.3
CLN3-229ENST00000567963 GOLGA8FQ08AF8 430 aa16.94■□□□□ 0.3
CLN3-229ENST00000567963 GOLGA8DPQ0D2H9 430 aa16.94■□□□□ 0.3
CLN3-229ENST00000567963 ZNF394Q53GI3 561 aa16.94■□□□□ 0.3
CLN3-229ENST00000567963 RNF43Q68DV7 783 aa16.94■□□□□ 0.3
CLN3-229ENST00000567963 ZNF513Q8N8E2 541 aaPredicted RBP16.94■□□□□ 0.3
CLN3-229ENST00000567963 TERB1Q8NA31 727 aa16.94■□□□□ 0.3
CLN3-229ENST00000567963 RLN3Q8WXF3 142 aa16.94■□□□□ 0.3
CLN3-229ENST00000567963 SEMA4DQ92854 862 aa16.94■□□□□ 0.3
CLN3-229ENST00000567963 CCDC34Q96HJ3 373 aa16.94■□□□□ 0.3
CLN3-229ENST00000567963 LSM14BQ9BX40 385 aaKnown RBP16.94■□□□□ 0.3
CLN3-229ENST00000567963 DNMT3LQ9UJW3 386 aa16.94■□□□□ 0.3
CLN3-229ENST00000567963 NUDT5Q9UKK9 219 aa16.94■□□□□ 0.3
CLN3-229ENST00000567963 HCN2Q9UL51 889 aa16.94■□□□□ 0.3
CLN3-229ENST00000567963 STARD13Q9Y3M8 1113 aa16.94■□□□□ 0.3
CLN3-229ENST00000567963 USP3Q9Y6I4 520 aa16.94■□□□□ 0.3
CLN3-229ENST00000567963 PLA2G4AP47712 749 aa16.93■□□□□ 0.3
CLN3-229ENST00000567963 PSEN1P49768 467 aa16.93■□□□□ 0.3
CLN3-229ENST00000567963 C10orf76Q5T2E6 689 aa16.93■□□□□ 0.3
CLN3-229ENST00000567963 TPGS1Q6ZTW0 290 aa16.93■□□□□ 0.3
CLN3-229ENST00000567963 CCDC186Q7Z3E2 898 aa16.93■□□□□ 0.3
CLN3-229ENST00000567963 TRMT11Q7Z4G4 463 aaKnown RBP16.93■□□□□ 0.3
CLN3-229ENST00000567963 ZNF276Q8N554 614 aa16.93■□□□□ 0.3
CLN3-229ENST00000567963 FRMD1Q8N878 549 aa16.93■□□□□ 0.3
CLN3-229ENST00000567963 FBXL13Q8NEE6 735 aa16.93■□□□□ 0.3
CLN3-229ENST00000567963 HMGB4Q8WW32 186 aa16.93■□□□□ 0.3
CLN3-229ENST00000567963 HEXIM2Q96MH2 286 aaKnown RBP16.93■□□□□ 0.3
CLN3-229ENST00000567963 XPO6Q96QU8 1125 aaKnown RBP16.93■□□□□ 0.3
CLN3-229ENST00000567963 BBS2Q9BXC9 721 aa16.93■□□□□ 0.3
CLN3-229ENST00000567963 RAB20Q9NX57 234 aa16.93■□□□□ 0.3
CLN3-229ENST00000567963 BCCIPQ9P287 314 aaKnown RBP eCLIP16.93■□□□□ 0.3
CLN3-229ENST00000567963 LSM7Q9UK45 103 aaKnown RBP16.93■□□□□ 0.3
CLN3-229ENST00000567963 TCRBV21S2A2A0A5A6 115 aa16.93■□□□□ 0.3
CLN3-229ENST00000567963 NEDD8-MDP1E9PL57 170 aa16.93■□□□□ 0.3
CLN3-229ENST00000567963 MDM4O15151 490 aa16.93■□□□□ 0.3
CLN3-229ENST00000567963 CETN3O15182 167 aa16.93■□□□□ 0.3
CLN3-229ENST00000567963 CACNG3O60359 315 aa16.93■□□□□ 0.3
CLN3-229ENST00000567963 TYRP14679 529 aa16.93■□□□□ 0.3
CLN3-229ENST00000567963 KCNA4P22459 653 aa16.93■□□□□ 0.3
CLN3-229ENST00000567963 DHPSP49366 369 aaPredicted RBP16.93■□□□□ 0.3
CLN3-229ENST00000567963 MXI1P50539 228 aa16.93■□□□□ 0.3
CLN3-229ENST00000567963 PNOCQ13519 176 aa16.93■□□□□ 0.3
CLN3-229ENST00000567963 C10orf120Q5SQS8 335 aa16.93■□□□□ 0.3
CLN3-229ENST00000567963 SCD5Q86SK9 330 aa16.93■□□□□ 0.3
CLN3-229ENST00000567963 TTC39CQ8N584 583 aa16.93■□□□□ 0.3
CLN3-229ENST00000567963 TMEM176AQ96HP8 235 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms