RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 SPOPLQ6IQ16 392 aa15.73■□□□□ 0.11
CLN3-222ENST00000566083 BBS7Q8IWZ6 715 aa15.73■□□□□ 0.11
CLN3-222ENST00000566083 ETFBKMTQ8IXQ9 262 aa15.73■□□□□ 0.11
CLN3-222ENST00000566083 CCDC33Q8N5R6 958 aa15.73■□□□□ 0.11
CLN3-222ENST00000566083 ALLCQ8N6M5 410 aa15.73■□□□□ 0.11
CLN3-222ENST00000566083 TXNDC5Q8NBS9 432 aaKnown RBP15.73■□□□□ 0.11
CLN3-222ENST00000566083 TAS1R2Q8TE23 839 aa15.73■□□□□ 0.11
CLN3-222ENST00000566083 HMGXB4Q9UGU5 601 aa15.73■□□□□ 0.11
CLN3-222ENST00000566083 DNMT3LQ9UJW3 386 aa15.73■□□□□ 0.11
CLN3-222ENST00000566083 MAPK8IP1Q9UQF2 711 aa15.73■□□□□ 0.11
CLN3-222ENST00000566083 ZNF510Q9Y2H8 683 aa15.73■□□□□ 0.11
CLN3-222ENST00000566083 EML5Q05BV3 1969 aa15.72■□□□□ 0.11
CLN3-222ENST00000566083 MYO16Q9Y6X6 1858 aa15.72■□□□□ 0.11
CLN3-222ENST00000566083 GOLGA6L4A6NEF3 574 aa15.72■□□□□ 0.11
CLN3-222ENST00000566083 TULP3O75386 442 aa15.72■□□□□ 0.11
CLN3-222ENST00000566083 PRR29P0C7W0 189 aa15.72■□□□□ 0.11
CLN3-222ENST00000566083 RALAP11233 206 aa15.72■□□□□ 0.11
CLN3-222ENST00000566083 ACO1P21399 889 aaKnown RBP15.72■□□□□ 0.11
CLN3-222ENST00000566083 TIE1P35590 1138 aa15.72■□□□□ 0.11
CLN3-222ENST00000566083 PPP3CAQ08209 521 aa15.72■□□□□ 0.11
CLN3-222ENST00000566083 STPG1Q5TH74 334 aa15.72■□□□□ 0.11
CLN3-222ENST00000566083 SDE2Q6IQ49 451 aa15.72■□□□□ 0.11
CLN3-222ENST00000566083 ARHGAP18Q8N392 663 aa15.72■□□□□ 0.11
CLN3-222ENST00000566083 FBXL13Q8NEE6 735 aa15.72■□□□□ 0.11
CLN3-222ENST00000566083 MDGA1Q8NFP4 955 aa15.72■□□□□ 0.11
CLN3-222ENST00000566083 OLIG1Q8TAK6 271 aa15.72■□□□□ 0.11
CLN3-222ENST00000566083 KLF16Q9BXK1 252 aaPredicted RBP15.72■□□□□ 0.11
CLN3-222ENST00000566083 DUSP16Q9BY84 665 aa15.72■□□□□ 0.11
CLN3-222ENST00000566083 UBXN6Q9BZV1 441 aa15.72■□□□□ 0.11
CLN3-222ENST00000566083 CLIC5Q9NZA1 410 aa15.72■□□□□ 0.11
CLN3-222ENST00000566083 HOOK1Q9UJC3 728 aaKnown RBP15.72■□□□□ 0.11
CLN3-222ENST00000566083 STARD13Q9Y3M8 1113 aa15.72■□□□□ 0.11
CLN3-222ENST00000566083 KIAA1549LQ6ZVL6 1849 aa15.71■□□□□ 0.11
CLN3-222ENST00000566083 SCAMP3O14828 347 aaKnown RBP15.71■□□□□ 0.11
CLN3-222ENST00000566083 DCLK1O15075 740 aa15.71■□□□□ 0.11
CLN3-222ENST00000566083 TRIM49P0CI25 452 aa15.71■□□□□ 0.11
CLN3-222ENST00000566083 TRIM49CP0CI26 452 aa15.71■□□□□ 0.11
CLN3-222ENST00000566083 MXI1P50539 228 aa15.71■□□□□ 0.11
CLN3-222ENST00000566083 KIF11P52732 1056 aa15.71■□□□□ 0.11
CLN3-222ENST00000566083 ORC1Q13415 861 aa15.71■□□□□ 0.11
CLN3-222ENST00000566083 E2F5Q15329 346 aa15.71■□□□□ 0.11
CLN3-222ENST00000566083 ZCWPW2Q504Y3 356 aa15.71■□□□□ 0.11
CLN3-222ENST00000566083 RNF43Q68DV7 783 aa15.71■□□□□ 0.11
CLN3-222ENST00000566083 LPCAT2Q7L5N7 544 aa15.71■□□□□ 0.11
CLN3-222ENST00000566083 CCDC186Q7Z3E2 898 aa15.71■□□□□ 0.11
CLN3-222ENST00000566083 C12orf40Q86WS4 652 aa15.71■□□□□ 0.11
CLN3-222ENST00000566083 TTC30AQ86WT1 665 aa15.71■□□□□ 0.11
CLN3-222ENST00000566083 PHTF2Q8N3S3 785 aa15.71■□□□□ 0.11
CLN3-222ENST00000566083 ZNF513Q8N8E2 541 aaPredicted RBP15.71■□□□□ 0.11
CLN3-222ENST00000566083 TERB1Q8NA31 727 aa15.71■□□□□ 0.11
CLN3-222ENST00000566083 ELMO3Q96BJ8 720 aa15.71■□□□□ 0.11
CLN3-222ENST00000566083 HEXIM2Q96MH2 286 aaKnown RBP15.71■□□□□ 0.11
CLN3-222ENST00000566083 GSDMAQ96QA5 445 aa15.71■□□□□ 0.11
CLN3-222ENST00000566083 TSG101Q99816 390 aa15.71■□□□□ 0.11
CLN3-222ENST00000566083 TPSD1Q9BZJ3 242 aa15.71■□□□□ 0.11
CLN3-222ENST00000566083 APOBEC3GQ9HC16 384 aaKnown RBP15.71■□□□□ 0.11
CLN3-222ENST00000566083 MARK1Q9P0L2 795 aa15.71■□□□□ 0.11
CLN3-222ENST00000566083 BCCIPQ9P287 314 aaKnown RBP eCLIP15.71■□□□□ 0.11
CLN3-222ENST00000566083 HHLA1C9JL84 531 aa15.7■□□□□ 0.1
CLN3-222ENST00000566083 SGK1O00141 431 aa15.7■□□□□ 0.1
CLN3-222ENST00000566083 TM4SF5O14894 197 aa15.7■□□□□ 0.1
CLN3-222ENST00000566083 KHNYNO15037 678 aaKnown RBP15.7■□□□□ 0.1
CLN3-222ENST00000566083 MAP3K13O43283 966 aa15.7■□□□□ 0.1
CLN3-222ENST00000566083 CACNG3O60359 315 aa15.7■□□□□ 0.1
CLN3-222ENST00000566083 SMC2O95347 1197 aa15.7■□□□□ 0.1
CLN3-222ENST00000566083 IRF1P10914 325 aa15.7■□□□□ 0.1
CLN3-222ENST00000566083 CD58P19256 250 aa15.7■□□□□ 0.1
CLN3-222ENST00000566083 P2RY2P41231 377 aa15.7■□□□□ 0.1
CLN3-222ENST00000566083 COG7P83436 770 aa15.7■□□□□ 0.1
CLN3-222ENST00000566083 KDSRQ06136 332 aa15.7■□□□□ 0.1
CLN3-222ENST00000566083 CCDC6Q16204 474 aa15.7■□□□□ 0.1
CLN3-222ENST00000566083 COBLL1Q53SF7 1204 aa15.7■□□□□ 0.1
CLN3-222ENST00000566083 C10orf120Q5SQS8 335 aa15.7■□□□□ 0.1
CLN3-222ENST00000566083 C10orf76Q5T2E6 689 aa15.7■□□□□ 0.1
CLN3-222ENST00000566083 DAB2IPQ5VWQ8 1189 aa15.7■□□□□ 0.1
CLN3-222ENST00000566083 GRAMD4Q6IC98 578 aa15.7■□□□□ 0.1
CLN3-222ENST00000566083 TMEM92Q6UXU6 159 aa15.7■□□□□ 0.1
CLN3-222ENST00000566083 CYP2U1Q7Z449 544 aa15.7■□□□□ 0.1
CLN3-222ENST00000566083 TMEM25Q86YD3 366 aa15.7■□□□□ 0.1
CLN3-222ENST00000566083 TWNKQ96RR1 684 aa15.7■□□□□ 0.1
CLN3-222ENST00000566083 BBS2Q9BXC9 721 aa15.7■□□□□ 0.1
CLN3-222ENST00000566083 DCLK3Q9C098 648 aa15.7■□□□□ 0.1
CLN3-222ENST00000566083 MMRN2Q9H8L6 949 aa15.7■□□□□ 0.1
CLN3-222ENST00000566083 MTPAPQ9NVV4 582 aaKnown RBP eCLIP15.7■□□□□ 0.1
CLN3-222ENST00000566083 RAB20Q9NX57 234 aa15.7■□□□□ 0.1
CLN3-222ENST00000566083 NAGPAQ9UK23 515 aa15.7■□□□□ 0.1
CLN3-222ENST00000566083 THADAQ6YHU6 1953 aa15.69■□□□□ 0.1
CLN3-222ENST00000566083 SLC16A3O15427 465 aaKnown RBP15.69■□□□□ 0.1
CLN3-222ENST00000566083 RARGP13631 454 aa15.69■□□□□ 0.1
CLN3-222ENST00000566083 NTSR1P30989 418 aa15.69■□□□□ 0.1
CLN3-222ENST00000566083 CHKAP35790 457 aa15.69■□□□□ 0.1
CLN3-222ENST00000566083 YWHAEP62258 255 aaKnown RBP15.69■□□□□ 0.1
CLN3-222ENST00000566083 FKBP3Q00688 224 aaKnown RBP15.69■□□□□ 0.1
CLN3-222ENST00000566083 PGBD3Q8N328 593 aa15.69■□□□□ 0.1
CLN3-222ENST00000566083 NAT16Q8N8M0 369 aa15.69■□□□□ 0.1
CLN3-222ENST00000566083 TMEM176AQ96HP8 235 aa15.69■□□□□ 0.1
CLN3-222ENST00000566083 LSM14BQ9BX40 385 aaKnown RBP15.69■□□□□ 0.1
CLN3-222ENST00000566083 DNAJC17Q9NVM6 304 aaKnown RBP15.69■□□□□ 0.1
CLN3-222ENST00000566083 USP3Q9Y6I4 520 aa15.69■□□□□ 0.1
CLN3-222ENST00000566083 NUP205Q92621 2012 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms