RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 SMOC1Q9H4F8 434 aa19.77■□□□□ 0.76
CLN3-218ENST00000565688 MAPK8IP1Q9UQF2 711 aa19.77■□□□□ 0.76
CLN3-218ENST00000565688 INVSQ9Y283 1065 aa19.77■□□□□ 0.76
CLN3-218ENST00000565688 ANTXRLA6NF34 631 aa19.76■□□□□ 0.75
CLN3-218ENST00000565688 SGK1O00141 431 aa19.76■□□□□ 0.75
CLN3-218ENST00000565688 TULP3O75386 442 aa19.76■□□□□ 0.75
CLN3-218ENST00000565688 IRF1P10914 325 aa19.76■□□□□ 0.75
CLN3-218ENST00000565688 PPP3CAQ08209 521 aa19.76■□□□□ 0.75
CLN3-218ENST00000565688 BYSLQ13895 437 aaKnown RBP19.76■□□□□ 0.75
CLN3-218ENST00000565688 ANO4Q32M45 955 aa19.76■□□□□ 0.75
CLN3-218ENST00000565688 RNF43Q68DV7 783 aa19.76■□□□□ 0.75
CLN3-218ENST00000565688 KLHDC10Q6PID8 442 aa19.76■□□□□ 0.75
CLN3-218ENST00000565688 TMEM25Q86YD3 366 aa19.76■□□□□ 0.75
CLN3-218ENST00000565688 TTC39CQ8N584 583 aa19.76■□□□□ 0.75
CLN3-218ENST00000565688 FAXDC2Q96IV6 333 aa19.76■□□□□ 0.75
CLN3-218ENST00000565688 CHAMP1Q96JM3 812 aa19.76■□□□□ 0.75
CLN3-218ENST00000565688 SPACA7Q96KW9 195 aa19.76■□□□□ 0.75
CLN3-218ENST00000565688 TWNKQ96RR1 684 aa19.76■□□□□ 0.75
CLN3-218ENST00000565688 KLF16Q9BXK1 252 aaPredicted RBP19.76■□□□□ 0.75
CLN3-218ENST00000565688 APOBEC3GQ9HC16 384 aaKnown RBP19.76■□□□□ 0.75
CLN3-218ENST00000565688 TMEM8AQ9HCN3 771 aa19.76■□□□□ 0.75
CLN3-218ENST00000565688 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.76■□□□□ 0.756e-9■■■■■ 134.6
CLN3-218ENST00000565688 LSM7Q9UK45 103 aaKnown RBP19.76■□□□□ 0.75
CLN3-218ENST00000565688 HHLA1C9JL84 531 aa19.75■□□□□ 0.75
CLN3-218ENST00000565688 CILPO75339 1184 aa19.75■□□□□ 0.75
CLN3-218ENST00000565688 ACO1P21399 889 aaKnown RBP19.75■□□□□ 0.75
CLN3-218ENST00000565688 PGFP49763 221 aa19.75■□□□□ 0.75
CLN3-218ENST00000565688 MCCD1P59942 119 aaPredicted RBP19.75■□□□□ 0.75
CLN3-218ENST00000565688 EDRF1Q3B7T1 1238 aa19.75■□□□□ 0.75
CLN3-218ENST00000565688 EMC10Q5UCC4 262 aa19.75■□□□□ 0.75
CLN3-218ENST00000565688 KRT39Q6A163 491 aa19.75■□□□□ 0.75
CLN3-218ENST00000565688 TCEAL6Q6IPX3 200 aa19.75■□□□□ 0.75
CLN3-218ENST00000565688 GPRIN1Q7Z2K8 1008 aa19.75■□□□□ 0.75
CLN3-218ENST00000565688 CYP2U1Q7Z449 544 aa19.75■□□□□ 0.75
CLN3-218ENST00000565688 TADA2BQ86TJ2 420 aa19.75■□□□□ 0.75
CLN3-218ENST00000565688 NAT16Q8N8M0 369 aa19.75■□□□□ 0.75
CLN3-218ENST00000565688 TCEAL3Q969E4 200 aa19.75■□□□□ 0.75
CLN3-218ENST00000565688 EDEM2Q9BV94 578 aa19.75■□□□□ 0.75
CLN3-218ENST00000565688 BCCIPQ9P287 314 aaKnown RBP eCLIP19.75■□□□□ 0.75
CLN3-218ENST00000565688 WDR35Q9P2L0 1181 aa19.75■□□□□ 0.75
CLN3-218ENST00000565688 MYOFQ9NZM1 2061 aa19.74■□□□□ 0.75
CLN3-218ENST00000565688 MYH10P35580 1976 aa19.74■□□□□ 0.75
CLN3-218ENST00000565688 CYP26A1O43174 497 aa19.74■□□□□ 0.75
CLN3-218ENST00000565688 STX10O60499 249 aa19.74■□□□□ 0.75
CLN3-218ENST00000565688 ADAM23O75077 832 aa19.74■□□□□ 0.75
CLN3-218ENST00000565688 ZNF202O95125 648 aa19.74■□□□□ 0.75
CLN3-218ENST00000565688 TBX18O95935 607 aa19.74■□□□□ 0.75
CLN3-218ENST00000565688 HNRNPLP14866 589 aaKnown RBP eCLIP19.74■□□□□ 0.75
CLN3-218ENST00000565688 CD58P19256 250 aa19.74■□□□□ 0.75
CLN3-218ENST00000565688 BCKDHBP21953 392 aa19.74■□□□□ 0.75
CLN3-218ENST00000565688 KCNA4P22459 653 aa19.74■□□□□ 0.75
CLN3-218ENST00000565688 P2RY2P41231 377 aa19.74■□□□□ 0.75
CLN3-218ENST00000565688 PSEN1P49768 467 aa19.74■□□□□ 0.75
CLN3-218ENST00000565688 ZCWPW2Q504Y3 356 aa19.74■□□□□ 0.75
CLN3-218ENST00000565688 LPCAT2Q7L5N7 544 aa19.74■□□□□ 0.75
CLN3-218ENST00000565688 ZNF513Q8N8E2 541 aaPredicted RBP19.74■□□□□ 0.75
CLN3-218ENST00000565688 TERB1Q8NA31 727 aa19.74■□□□□ 0.75
CLN3-218ENST00000565688 WBP2Q969T9 261 aa19.74■□□□□ 0.75
CLN3-218ENST00000565688 JAKMIP2Q96AA8 810 aa19.74■□□□□ 0.75
CLN3-218ENST00000565688 XPO6Q96QU8 1125 aaKnown RBP19.74■□□□□ 0.75
CLN3-218ENST00000565688 LSM14BQ9BX40 385 aaKnown RBP19.74■□□□□ 0.75
CLN3-218ENST00000565688 FAM124BQ9H5Z6 455 aaPredicted RBP19.74■□□□□ 0.75
CLN3-218ENST00000565688 MMRN2Q9H8L6 949 aa19.74■□□□□ 0.75
CLN3-218ENST00000565688 DNMT3LQ9UJW3 386 aa19.74■□□□□ 0.75
CLN3-218ENST00000565688 KHNYNO15037 678 aaKnown RBP19.73■□□□□ 0.75
CLN3-218ENST00000565688 MAP3K13O43283 966 aa19.73■□□□□ 0.75
CLN3-218ENST00000565688 GREM1O60565 184 aa19.73■□□□□ 0.75
CLN3-218ENST00000565688 PLA2G4AP47712 749 aa19.73■□□□□ 0.75
CLN3-218ENST00000565688 KIF11P52732 1056 aa19.73■□□□□ 0.75
CLN3-218ENST00000565688 SPDYCQ5MJ68 293 aa19.73■□□□□ 0.75
CLN3-218ENST00000565688 C10orf76Q5T2E6 689 aa19.73■□□□□ 0.75
CLN3-218ENST00000565688 GRAMD4Q6IC98 578 aa19.73■□□□□ 0.75
CLN3-218ENST00000565688 ZNF276Q8N554 614 aa19.73■□□□□ 0.75
CLN3-218ENST00000565688 HMGB4Q8WW32 186 aa19.73■□□□□ 0.75
CLN3-218ENST00000565688 CDK5RAP1Q96SZ6 601 aaKnown RBP19.73■□□□□ 0.75
CLN3-218ENST00000565688 BBS2Q9BXC9 721 aa19.73■□□□□ 0.75
CLN3-218ENST00000565688 DUSP16Q9BY84 665 aa19.73■□□□□ 0.75
CLN3-218ENST00000565688 GOLPH3LQ9H4A5 285 aa19.73■□□□□ 0.75
CLN3-218ENST00000565688 MTPAPQ9NVV4 582 aaKnown RBP eCLIP19.73■□□□□ 0.75
CLN3-218ENST00000565688 OSER1Q9NX31 292 aa19.73■□□□□ 0.75
CLN3-218ENST00000565688 MARK1Q9P0L2 795 aa19.73■□□□□ 0.75
CLN3-218ENST00000565688 CIZ1Q9ULV3 898 aaPredicted RBP19.73■□□□□ 0.75
CLN3-218ENST00000565688 STARD13Q9Y3M8 1113 aa19.73■□□□□ 0.75
CLN3-218ENST00000565688 A0A1W2PQH9 124 aa19.72■□□□□ 0.75
CLN3-218ENST00000565688 TCRBV21S2A2A0A5A6 115 aa19.72■□□□□ 0.75
CLN3-218ENST00000565688 NEDD8-MDP1E9PL57 170 aa19.72■□□□□ 0.75
CLN3-218ENST00000565688 CACNG3O60359 315 aa19.72■□□□□ 0.75
CLN3-218ENST00000565688 RARGP13631 454 aa19.72■□□□□ 0.75
CLN3-218ENST00000565688 DHPSP49366 369 aaPredicted RBP19.72■□□□□ 0.75
CLN3-218ENST00000565688 C10orf120Q5SQS8 335 aa19.72■□□□□ 0.75
CLN3-218ENST00000565688 CCDC186Q7Z3E2 898 aa19.72■□□□□ 0.75
CLN3-218ENST00000565688 PGBD3Q8N328 593 aa19.72■□□□□ 0.75
CLN3-218ENST00000565688 FBXL13Q8NEE6 735 aa19.72■□□□□ 0.75
CLN3-218ENST00000565688 DNAJC17Q9NVM6 304 aaKnown RBP19.72■□□□□ 0.75
CLN3-218ENST00000565688 RMND1Q9NWS8 449 aa19.72■□□□□ 0.75
CLN3-218ENST00000565688 NAGPAQ9UK23 515 aa19.72■□□□□ 0.75
CLN3-218ENST00000565688 ABCA7Q8IZY2 2146 aa19.72■□□□□ 0.75
CLN3-218ENST00000565688 CEP295Q9C0D2 2601 aa19.72■□□□□ 0.75
CLN3-218ENST00000565688 LNP1A1A4G5 178 aa19.71■□□□□ 0.75
CLN3-218ENST00000565688 CETN3O15182 167 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms