RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 F8VZ95 297 aa18.15■□□□□ 0.5
CLN3-217ENST00000565354 DPYSL4O14531 572 aa18.15■□□□□ 0.5
CLN3-217ENST00000565354 TNFRSF10BO14763 440 aa18.15■□□□□ 0.5
CLN3-217ENST00000565354 CBFA2T2O43439 604 aa18.15■□□□□ 0.5
CLN3-217ENST00000565354 KRT9P35527 623 aa18.15■□□□□ 0.5
CLN3-217ENST00000565354 AVPR1AP37288 418 aa18.15■□□□□ 0.5
CLN3-217ENST00000565354 STAT1P42224 750 aa18.15■□□□□ 0.5
CLN3-217ENST00000565354 PDE6CP51160 858 aa18.15■□□□□ 0.5
CLN3-217ENST00000565354 CCR3P51677 355 aa18.15■□□□□ 0.5
CLN3-217ENST00000565354 PLCB2Q00722 1185 aa18.15■□□□□ 0.5
CLN3-217ENST00000565354 STXBP5Q5T5C0 1151 aa18.15■□□□□ 0.5
CLN3-217ENST00000565354 PRR23BQ6ZRT6 265 aa18.15■□□□□ 0.5
CLN3-217ENST00000565354 PIGZQ86VD9 579 aa18.15■□□□□ 0.5
CLN3-217ENST00000565354 FAM71AQ8IYT1 594 aa18.15■□□□□ 0.5
CLN3-217ENST00000565354 MAB21L3Q8N8X9 362 aa18.15■□□□□ 0.5
CLN3-217ENST00000565354 ZNF606Q8WXB4 792 aa18.15■□□□□ 0.5
CLN3-217ENST00000565354 OVCA2Q8WZ82 227 aa18.15■□□□□ 0.5
CLN3-217ENST00000565354 IRF7Q92985 503 aa18.15■□□□□ 0.5
CLN3-217ENST00000565354 TRMT61BQ9BVS5 477 aaKnown RBP18.15■□□□□ 0.5
CLN3-217ENST00000565354 NAA15Q9BXJ9 866 aaKnown RBP18.15■□□□□ 0.5
CLN3-217ENST00000565354 UBXN6Q9BZV1 441 aa18.15■□□□□ 0.5
CLN3-217ENST00000565354 ZFP14Q9HCL3 533 aa18.15■□□□□ 0.5
CLN3-217ENST00000565354 ACP6Q9NPH0 428 aa18.15■□□□□ 0.5
CLN3-217ENST00000565354 IFNKQ9P0W0 207 aa18.15■□□□□ 0.5
CLN3-217ENST00000565354 GREB1Q4ZG55 1949 aa18.14■□□□□ 0.49
CLN3-217ENST00000565354 TRAV19A0A0A6YYK7 116 aa18.14■□□□□ 0.49
CLN3-217ENST00000565354 A0A1W2PQC6 194 aa18.14■□□□□ 0.49
CLN3-217ENST00000565354 HHLA1C9JL84 531 aa18.14■□□□□ 0.49
CLN3-217ENST00000565354 NRG2O14511 850 aaPredicted RBP18.14■□□□□ 0.49
CLN3-217ENST00000565354 EPHB6O15197 1021 aa18.14■□□□□ 0.49
CLN3-217ENST00000565354 GFPT2O94808 682 aa18.14■□□□□ 0.49
CLN3-217ENST00000565354 NR1I3Q14994 352 aa18.14■□□□□ 0.49
CLN3-217ENST00000565354 FAM78AQ5JUQ0 283 aa18.14■□□□□ 0.49
CLN3-217ENST00000565354 TXNDC8Q6A555 127 aa18.14■□□□□ 0.49
CLN3-217ENST00000565354 GPRIN1Q7Z2K8 1008 aa18.14■□□□□ 0.49
CLN3-217ENST00000565354 TMEM150AQ86TG1 271 aa18.14■□□□□ 0.49
CLN3-217ENST00000565354 SIX6OS1Q8N1H7 587 aa18.14■□□□□ 0.49
CLN3-217ENST00000565354 SMARCD2Q92925 531 aa18.14■□□□□ 0.49
CLN3-217ENST00000565354 ZSWIM3Q96MP5 696 aa18.14■□□□□ 0.49
CLN3-217ENST00000565354 LMAN1LQ9HAT1 526 aa18.14■□□□□ 0.49
CLN3-217ENST00000565354 TRPV5Q9NQA5 729 aa18.14■□□□□ 0.49
CLN3-217ENST00000565354 TLR8Q9NR97 1041 aaKnown RBP18.14■□□□□ 0.49
CLN3-217ENST00000565354 SEMA4GQ9NTN9 838 aa18.14■□□□□ 0.49
CLN3-217ENST00000565354 CHORDC1Q9UHD1 332 aaPredicted RBP18.14■□□□□ 0.49
CLN3-217ENST00000565354 CEP83Q9Y592 693 aa18.14■□□□□ 0.49
CLN3-217ENST00000565354 SDK1Q7Z5N4 2213 aa18.14■□□□□ 0.49
CLN3-217ENST00000565354 FAM208BQ5VWN6 2430 aa18.13■□□□□ 0.49
CLN3-217ENST00000565354 SPAG17Q6Q759 2223 aa18.13■□□□□ 0.49
CLN3-217ENST00000565354 TADA3O75528 432 aa18.13■□□□□ 0.49
CLN3-217ENST00000565354 CKMP06732 381 aa18.13■□□□□ 0.49
CLN3-217ENST00000565354 CLCN1P35523 988 aa18.13■□□□□ 0.49
CLN3-217ENST00000565354 SOX5P35711 763 aa18.13■□□□□ 0.49
CLN3-217ENST00000565354 PLA2G4AP47712 749 aa18.13■□□□□ 0.49
CLN3-217ENST00000565354 TKTL1P51854 596 aa18.13■□□□□ 0.49
CLN3-217ENST00000565354 KIF11P52732 1056 aa18.13■□□□□ 0.49
CLN3-217ENST00000565354 PRR23CQ6ZRP0 262 aa18.13■□□□□ 0.49
CLN3-217ENST00000565354 SLC47A2Q86VL8 602 aa18.13■□□□□ 0.49
CLN3-217ENST00000565354 MON1AQ86VX9 555 aa18.13■□□□□ 0.49
CLN3-217ENST00000565354 FAM3CQ92520 227 aa18.13■□□□□ 0.49
CLN3-217ENST00000565354 ASB16Q96NS5 453 aa18.13■□□□□ 0.49
CLN3-217ENST00000565354 ZSWIM1Q9BR11 485 aa18.13■□□□□ 0.49
CLN3-217ENST00000565354 ST7Q9NRC1 585 aa18.13■□□□□ 0.49
CLN3-217ENST00000565354 IL37Q9NZH6 218 aa18.13■□□□□ 0.49
CLN3-217ENST00000565354 GMIPQ9P107 970 aa18.13■□□□□ 0.49
CLN3-217ENST00000565354 SCML2Q9UQR0 700 aa18.13■□□□□ 0.49
CLN3-217ENST00000565354 MYO16Q9Y6X6 1858 aa18.13■□□□□ 0.49
CLN3-217ENST00000565354 ZNF840PA6NDX5 716 aa18.12■□□□□ 0.49
CLN3-217ENST00000565354 SOBPA7XYQ1 873 aa18.12■□□□□ 0.49
CLN3-217ENST00000565354 TULP2O00295 520 aa18.12■□□□□ 0.49
CLN3-217ENST00000565354 USP17L7P0C7H9 530 aa18.12■□□□□ 0.49
CLN3-217ENST00000565354 LCP1P13796 627 aa18.12■□□□□ 0.49
CLN3-217ENST00000565354 CXCL12P48061 93 aa18.12■□□□□ 0.49
CLN3-217ENST00000565354 RGS7P49802 495 aa18.12■□□□□ 0.49
CLN3-217ENST00000565354 ADIGQ0VDE8 80 aa18.12■□□□□ 0.49
CLN3-217ENST00000565354 SIM2Q14190 667 aaPredicted RBP18.12■□□□□ 0.49
CLN3-217ENST00000565354 CSRP2Q16527 193 aa18.12■□□□□ 0.49
CLN3-217ENST00000565354 TAF3Q5VWG9 929 aa18.12■□□□□ 0.49
CLN3-217ENST00000565354 DENND1BQ6P3S1 775 aa18.12■□□□□ 0.49
CLN3-217ENST00000565354 GPIHBP1Q8IV16 184 aa18.12■□□□□ 0.49
CLN3-217ENST00000565354 PASD1Q8IV76 773 aa18.12■□□□□ 0.49
CLN3-217ENST00000565354 FMNL3Q8IVF7 1028 aa18.12■□□□□ 0.49
CLN3-217ENST00000565354 ARID3BQ8IVW6 561 aaPredicted RBP18.12■□□□□ 0.49
CLN3-217ENST00000565354 CMTM8Q8IZV2 173 aa18.12■□□□□ 0.49
CLN3-217ENST00000565354 TTC16Q8NEE8 873 aa18.12■□□□□ 0.49
CLN3-217ENST00000565354 E2F7Q96AV8 911 aa18.12■□□□□ 0.49
CLN3-217ENST00000565354 SLC46A2Q9BY10 475 aa18.12■□□□□ 0.49
CLN3-217ENST00000565354 NACA2Q9H009 215 aa18.12■□□□□ 0.49
CLN3-217ENST00000565354 PIAS3Q9Y6X2 628 aa18.12■□□□□ 0.49
CLN3-217ENST00000565354 OBSL1O75147 1896 aa18.12■□□□□ 0.49
CLN3-217ENST00000565354 C2orf78A6NCI8 922 aa18.11■□□□□ 0.49
CLN3-217ENST00000565354 CCDC172P0C7W6 258 aa18.11■□□□□ 0.49
CLN3-217ENST00000565354 CYP11B1P15538 503 aa18.11■□□□□ 0.49
CLN3-217ENST00000565354 PSMC3P17980 439 aa18.11■□□□□ 0.49
CLN3-217ENST00000565354 HDCP19113 662 aa18.11■□□□□ 0.49
CLN3-217ENST00000565354 GDI1P31150 447 aa18.11■□□□□ 0.49
CLN3-217ENST00000565354 JAM2P57087 298 aa18.11■□□□□ 0.49
CLN3-217ENST00000565354 SATB1Q01826 763 aa18.11■□□□□ 0.49
CLN3-217ENST00000565354 ARID5AQ03989 594 aa18.11■□□□□ 0.49
CLN3-217ENST00000565354 MEA1Q16626 185 aa18.11■□□□□ 0.49
CLN3-217ENST00000565354 PKDCCQ504Y2 493 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms