RNA–Protein interactions for RNA: ENST00000564678.1

HERPUD1-209, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 1 (best)

Gene HERPUD1, Length 2,199 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-209ENST00000564678 KCTD19Q17RG1 926 aaPredicted RBP7.59□□□□□ -1.2
HERPUD1-209ENST00000564678 KIZQ2M2Z5 673 aa7.59□□□□□ -1.2
HERPUD1-209ENST00000564678 ERMARDQ5T6L9 678 aa7.59□□□□□ -1.2
HERPUD1-209ENST00000564678 IZUMO3Q5VZ72 239 aa7.59□□□□□ -1.2
HERPUD1-209ENST00000564678 IL31Q6EBC2 164 aa7.59□□□□□ -1.2
HERPUD1-209ENST00000564678 YTHDF3Q7Z739 585 aaKnown RBP7.59□□□□□ -1.2
HERPUD1-209ENST00000564678 VSIG1Q86XK7 387 aa7.59□□□□□ -1.2
HERPUD1-209ENST00000564678 ZDHHC17Q8IUH5 632 aa7.59□□□□□ -1.2
HERPUD1-209ENST00000564678 RIBC1Q8N443 379 aaPredicted RBP7.59□□□□□ -1.2
HERPUD1-209ENST00000564678 ARFGAP1Q8N6T3 406 aa7.59□□□□□ -1.2
HERPUD1-209ENST00000564678 JOSD2Q8TAC2 188 aa7.59□□□□□ -1.2
HERPUD1-209ENST00000564678 MYCBPAPQ8TBZ2 947 aa7.59□□□□□ -1.2
HERPUD1-209ENST00000564678 TTC25Q96NG3 672 aa7.59□□□□□ -1.2
HERPUD1-209ENST00000564678 PPP1R16BQ96T49 567 aa7.59□□□□□ -1.2
HERPUD1-209ENST00000564678 KCNK17Q96T54 332 aa7.59□□□□□ -1.2
HERPUD1-209ENST00000564678 CNPY3Q9BT09 278 aa7.59□□□□□ -1.2
HERPUD1-209ENST00000564678 RSAD1Q9HA92 442 aa7.59□□□□□ -1.2
HERPUD1-209ENST00000564678 PCDH9Q9HC56 1237 aa7.59□□□□□ -1.2
HERPUD1-209ENST00000564678 NPHS2Q9NP85 383 aa7.59□□□□□ -1.2
HERPUD1-209ENST00000564678 TPX2Q9ULW0 747 aaKnown RBP7.59□□□□□ -1.2
HERPUD1-209ENST00000564678 UBQLN1Q9UMX0 589 aaKnown RBP7.59□□□□□ -1.2
HERPUD1-209ENST00000564678 TRIP11Q15643 1979 aa7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 DCDC2CA8MYV0 355 aa7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 HAS3O00219 553 aa7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 ENDOD1O94919 500 aa7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 CELF2O95319 508 aaKnown RBP7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 NPTXRO95502 500 aa7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 TRUB2O95900 331 aaKnown RBP7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 CD4P01730 458 aa7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 SMIM10L2AP0DMW4 78 aa7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 SMIM10L2BP0DMW5 78 aa7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 DESP17661 470 aa7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 CHKAP35790 457 aa7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 CPT1AP50416 773 aa7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 NEK2P51955 445 aa7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 CORO7P57737 925 aa7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 MAPRE1Q15691 268 aaKnown RBP7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 P3H1Q32P28 736 aa7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 PKDCCQ504Y2 493 aa7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 TXNRD3NBQ6F5E7 133 aa7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 ZNF473Q8WTR7 871 aaKnown RBP7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 USP6NLQ92738 828 aa7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 SNX27Q96L92 541 aa7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 KATNAL1Q9BW62 490 aa7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 ADAM7Q9H2U9 754 aa7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 CCDC134Q9H6E4 229 aa7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 PPANQ9NQ55 473 aaKnown RBP7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 HMGXB4Q9UGU5 601 aa7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 TSPAN16Q9UKR8 245 aa7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 USP18Q9UMW8 372 aa7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 SHOC2Q9UQ13 582 aa7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 TLR6Q9Y2C9 796 aa7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 ACTL7BQ9Y614 415 aa7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 RALGAPA2Q2PPJ7 1873 aa7.58□□□□□ -1.2
HERPUD1-209ENST00000564678 C5orf60A6NFR6 353 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 C19orf67A6NJJ6 358 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 C2CD4BA6NLJ0 364 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 APOC4-APOC2K7ER74 178 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 MYO1CO00159 1063 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 CDH16O75309 829 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 APOC2P02655 101 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 GNAT1P11488 350 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 CYP2C9P11712 490 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 CYP3A5P20815 502 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 GPD1P21695 349 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 IL1R2P27930 398 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 MIPP30301 263 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 STIP1P31948 543 aaKnown RBP7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 PNPLA4P41247 253 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 MAGEA4P43358 317 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 ARSEP51690 589 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 NEK3P51956 506 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 KYNUQ16719 465 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 SKIDA1Q1XH10 827 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 BOLA3Q53S33 107 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 XKR4Q5GH76 650 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 FAM102AQ5T9C2 384 aaPredicted RBP7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 OLFML2BQ68BL8 750 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 ARHGAP17Q68EM7 881 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 PTCRAQ6ISU1 281 aaPredicted RBP7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 ARCQ7LC44 396 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 TMEM110Q86TL2 294 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 MAP7D3Q8IWC1 876 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 KCTD6Q8NC69 237 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 KAT2BQ92831 832 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 TIFAQ96CG3 184 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 MFSD3Q96ES6 412 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 MYO19Q96H55 970 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 CFAP57Q96MR6 1250 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 XPO6Q96QU8 1125 aaKnown RBP7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 RBM15Q96T37 977 aaKnown RBP eCLIP7.57□□□□□ -1.22e-8■■■■□ 24.1
HERPUD1-209ENST00000564678 SLC4A5Q9BY07 1137 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 TRIM6Q9C030 488 aaPredicted RBP7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 ZNF700Q9H0M5 742 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 ETNK1Q9HBU6 452 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 NINJ2Q9NZG7 142 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 HESX1Q9UBX0 185 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 TJP2Q9UDY2 1190 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 LGALS13Q9UHV8 139 aa7.57□□□□□ -1.2
HERPUD1-209ENST00000564678 DYTNA2CJ06 578 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms