RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 ANKRD20A3Q5VUR7 823 aa14.02□□□□□ -0.16
CLK3-215ENST00000564353 ARMC3Q5W041 872 aa14.02□□□□□ -0.16
CLK3-215ENST00000564353 CEP128Q6ZU80 1094 aa14.02□□□□□ -0.16
CLK3-215ENST00000564353 PQLC3Q8N755 202 aa14.02□□□□□ -0.16
CLK3-215ENST00000564353 CXorf38Q8TB03 319 aa14.02□□□□□ -0.16
CLK3-215ENST00000564353 MCRS1Q96EZ8 462 aa14.02□□□□□ -0.16
CLK3-215ENST00000564353 NUDCD1Q96RS6 583 aa14.02□□□□□ -0.16
CLK3-215ENST00000564353 SNRNP25Q9BV90 132 aaKnown RBP14.02□□□□□ -0.16
CLK3-215ENST00000564353 TMEM120AQ9BXJ8 343 aa14.02□□□□□ -0.16
CLK3-215ENST00000564353 SMARCAD1Q9H4L7 1026 aa14.02□□□□□ -0.16
CLK3-215ENST00000564353 DENND2DQ9H6A0 471 aaPredicted RBP14.02□□□□□ -0.16
CLK3-215ENST00000564353 RSAD1Q9HA92 442 aa14.02□□□□□ -0.16
CLK3-215ENST00000564353 EBF2Q9HAK2 575 aa14.02□□□□□ -0.16
CLK3-215ENST00000564353 PCMTD2Q9NV79 361 aa14.02□□□□□ -0.16
CLK3-215ENST00000564353 TUBGCP4Q9UGJ1 667 aa14.02□□□□□ -0.16
CLK3-215ENST00000564353 BRCA1P38398 1863 aaKnown RBP14.02□□□□□ -0.17
CLK3-215ENST00000564353 CCDC130P13994 396 aa14.02□□□□□ -0.17
CLK3-215ENST00000564353 AKAP5P24588 427 aa14.02□□□□□ -0.17
CLK3-215ENST00000564353 PTPN7P35236 360 aa14.02□□□□□ -0.17
CLK3-215ENST00000564353 ADCYAP1R1P41586 468 aa14.02□□□□□ -0.17
CLK3-215ENST00000564353 OLIG2Q13516 323 aa14.02□□□□□ -0.17
CLK3-215ENST00000564353 RIPK1Q13546 671 aa14.02□□□□□ -0.17
CLK3-215ENST00000564353 NOMO1Q15155 1222 aa14.02□□□□□ -0.17
CLK3-215ENST00000564353 SURF1Q15526 300 aa14.02□□□□□ -0.17
CLK3-215ENST00000564353 SH3D19Q5HYK7 790 aa14.02□□□□□ -0.17
CLK3-215ENST00000564353 ZNF618Q5T7W0 954 aa14.02□□□□□ -0.17
CLK3-215ENST00000564353 CES4AQ5XG92 561 aa14.02□□□□□ -0.17
CLK3-215ENST00000564353 PPP1R2P3Q6NXS1 205 aa14.02□□□□□ -0.17
CLK3-215ENST00000564353 CASC4Q6P4E1 433 aa14.02□□□□□ -0.17
CLK3-215ENST00000564353 OR6B3Q8NGW1 331 aa14.02□□□□□ -0.17
CLK3-215ENST00000564353 DTX3LQ8TDB6 740 aa14.02□□□□□ -0.17
CLK3-215ENST00000564353 RSRC1Q96IZ7 334 aaKnown RBP14.02□□□□□ -0.17
CLK3-215ENST00000564353 RNF157Q96PX1 679 aa14.02□□□□□ -0.17
CLK3-215ENST00000564353 IQCGQ9H095 443 aaKnown RBP14.02□□□□□ -0.17
CLK3-215ENST00000564353 USP29Q9HBJ7 922 aa14.02□□□□□ -0.17
CLK3-215ENST00000564353 SNTG2Q9NY99 539 aa14.02□□□□□ -0.17
CLK3-215ENST00000564353 SENP1Q9P0U3 644 aa14.02□□□□□ -0.17
CLK3-215ENST00000564353 MCM3APO60318 1980 aa14.02□□□□□ -0.17
CLK3-215ENST00000564353 GABBR2O75899 941 aa14.01□□□□□ -0.17
CLK3-215ENST00000564353 DCTN3O75935 186 aa14.01□□□□□ -0.17
CLK3-215ENST00000564353 TROVE2P10155 538 aaKnown RBP eCLIP14.01□□□□□ -0.17
CLK3-215ENST00000564353 MYL2P10916 166 aa14.01□□□□□ -0.17
CLK3-215ENST00000564353 ALADP13716 330 aa14.01□□□□□ -0.17
CLK3-215ENST00000564353 GRM1Q13255 1194 aa14.01□□□□□ -0.17
CLK3-215ENST00000564353 RCN2Q14257 317 aa14.01□□□□□ -0.17
CLK3-215ENST00000564353 DSTYKQ6XUX3 929 aa14.01□□□□□ -0.17
CLK3-215ENST00000564353 APBB1IPQ7Z5R6 666 aaPredicted RBP14.01□□□□□ -0.17
CLK3-215ENST00000564353 FBXO41Q8TF61 875 aa14.01□□□□□ -0.17
CLK3-215ENST00000564353 ZMAT2Q96NC0 199 aaKnown RBP14.01□□□□□ -0.17
CLK3-215ENST00000564353 SRPK1Q96SB4 655 aaKnown RBP14.01□□□□□ -0.17
CLK3-215ENST00000564353 GOLGA2P5Q9HBQ8 144 aa14.01□□□□□ -0.17
CLK3-215ENST00000564353 ETNK2Q9NVF9 386 aa14.01□□□□□ -0.17
CLK3-215ENST00000564353 CACNG4Q9UBN1 327 aa14.01□□□□□ -0.17
CLK3-215ENST00000564353 MGAMO43451 1857 aa14.01□□□□□ -0.17
CLK3-215ENST00000564353 LGALS2P05162 132 aa14.01□□□□□ -0.17
CLK3-215ENST00000564353 CSH1P0DML2 217 aa14.01□□□□□ -0.17
CLK3-215ENST00000564353 CSH2P0DML3 217 aa14.01□□□□□ -0.17
CLK3-215ENST00000564353 CCND1P24385 295 aa14.01□□□□□ -0.17
CLK3-215ENST00000564353 ARFIP2P53365 341 aa14.01□□□□□ -0.17
CLK3-215ENST00000564353 SLC10A2Q12908 348 aaPredicted RBP14.01□□□□□ -0.17
CLK3-215ENST00000564353 KCNJ11Q14654 390 aa14.01□□□□□ -0.17
CLK3-215ENST00000564353 CCDC62Q6P9F0 684 aa14.01□□□□□ -0.17
CLK3-215ENST00000564353 CES3Q6UWW8 571 aa14.01□□□□□ -0.17
CLK3-215ENST00000564353 FBXO27Q8NI29 283 aa14.01□□□□□ -0.17
CLK3-215ENST00000564353 MAGEC3Q8TD91 643 aa14.01□□□□□ -0.17
CLK3-215ENST00000564353 CNPY3Q9BT09 278 aa14.01□□□□□ -0.17
CLK3-215ENST00000564353 LRMDAQ9H2I8 198 aa14.01□□□□□ -0.17
CLK3-215ENST00000564353 TEX264Q9Y6I9 313 aa14.01□□□□□ -0.17
CLK3-215ENST00000564353 RPS6KL1Q9Y6S9 549 aa14.01□□□□□ -0.17
CLK3-215ENST00000564353 LTBP3Q9NS15 1303 aa14.01□□□□□ -0.17
CLK3-215ENST00000564353 COPEO14579 308 aa14□□□□□ -0.17
CLK3-215ENST00000564353 HBP1O60381 514 aa14□□□□□ -0.17
CLK3-215ENST00000564353 PDHA1P08559 390 aa14□□□□□ -0.17
CLK3-215ENST00000564353 C16orf46Q6P387 395 aa14□□□□□ -0.17
CLK3-215ENST00000564353 DENND5BQ6ZUT9 1274 aa14□□□□□ -0.17
CLK3-215ENST00000564353 PLPPR4Q7Z2D5 763 aa14□□□□□ -0.17
CLK3-215ENST00000564353 CAND1Q86VP6 1230 aaKnown RBP14□□□□□ -0.17
CLK3-215ENST00000564353 ATXN7L3BQ96GX2 97 aa14□□□□□ -0.17
CLK3-215ENST00000564353 NT5C1AQ9BXI3 368 aa14□□□□□ -0.17
CLK3-215ENST00000564353 ZNF408Q9H9D4 720 aa14□□□□□ -0.17
CLK3-215ENST00000564353 CDHR5Q9HBB8 845 aa14□□□□□ -0.17
CLK3-215ENST00000564353 PLAC1Q9HBJ0 212 aa14□□□□□ -0.17
CLK3-215ENST00000564353 CYLDQ9NQC7 956 aa14□□□□□ -0.17
CLK3-215ENST00000564353 ERAP1Q9NZ08 941 aa14□□□□□ -0.17
CLK3-215ENST00000564353 SEPT10Q9P0V9 454 aa14□□□□□ -0.17
CLK3-215ENST00000564353 BARX2Q9UMQ3 279 aaPredicted RBP14□□□□□ -0.17
CLK3-215ENST00000564353 E7ESA3 106 aa14□□□□□ -0.17
CLK3-215ENST00000564353 APOL1O14791 398 aa14□□□□□ -0.17
CLK3-215ENST00000564353 PAPSS1O43252 624 aaPredicted RBP14□□□□□ -0.17
CLK3-215ENST00000564353 PEX11AO75192 247 aa14□□□□□ -0.17
CLK3-215ENST00000564353 LGR5O75473 907 aa14□□□□□ -0.17
CLK3-215ENST00000564353 VDRP11473 427 aa14□□□□□ -0.17
CLK3-215ENST00000564353 ADORA2AP29274 412 aa14□□□□□ -0.17
CLK3-215ENST00000564353 SDC4P31431 198 aa14□□□□□ -0.17
CLK3-215ENST00000564353 GTF2A2P52657 109 aa14□□□□□ -0.17
CLK3-215ENST00000564353 TAF11Q15544 211 aa14□□□□□ -0.17
CLK3-215ENST00000564353 KHDC1Q4VXA5 237 aaKnown RBP14□□□□□ -0.17
CLK3-215ENST00000564353 ARMCX2Q7L311 632 aa14□□□□□ -0.17
CLK3-215ENST00000564353 TP53INP2Q8IXH6 220 aa14□□□□□ -0.17
CLK3-215ENST00000564353 FNIP1Q8TF40 1166 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms