RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 FBXL13Q8NEE6 735 aa18.16■□□□□ 0.5
VPS9D1-203ENST00000563798 ENGASEQ8NFI3 743 aa18.16■□□□□ 0.5
VPS9D1-203ENST00000563798 DDX1Q92499 740 aaKnown RBP18.16■□□□□ 0.5
VPS9D1-203ENST00000563798 SEMA4DQ92854 862 aa18.16■□□□□ 0.5
VPS9D1-203ENST00000563798 UBXN6Q9BZV1 441 aa18.16■□□□□ 0.5
VPS9D1-203ENST00000563798 NACA2Q9H009 215 aa18.16■□□□□ 0.5
VPS9D1-203ENST00000563798 MTPAPQ9NVV4 582 aaKnown RBP eCLIP18.16■□□□□ 0.5
VPS9D1-203ENST00000563798 RAB20Q9NX57 234 aa18.16■□□□□ 0.5
VPS9D1-203ENST00000563798 MARK1Q9P0L2 795 aa18.16■□□□□ 0.5
VPS9D1-203ENST00000563798 COQ4Q9Y3A0 265 aa18.16■□□□□ 0.5
VPS9D1-203ENST00000563798 STARD13Q9Y3M8 1113 aa18.16■□□□□ 0.5
VPS9D1-203ENST00000563798 BCLAF3A2AJT9 711 aaKnown RBP18.15■□□□□ 0.5
VPS9D1-203ENST00000563798 SGK1O00141 431 aa18.15■□□□□ 0.5
VPS9D1-203ENST00000563798 DCLK1O15075 740 aa18.15■□□□□ 0.5
VPS9D1-203ENST00000563798 CYP26A1O43174 497 aa18.15■□□□□ 0.5
VPS9D1-203ENST00000563798 ALDH1A2O94788 518 aa18.15■□□□□ 0.5
VPS9D1-203ENST00000563798 TBX18O95935 607 aa18.15■□□□□ 0.5
VPS9D1-203ENST00000563798 CD58P19256 250 aa18.15■□□□□ 0.5
VPS9D1-203ENST00000563798 ACO1P21399 889 aaKnown RBP18.15■□□□□ 0.5
VPS9D1-203ENST00000563798 MXI1P50539 228 aa18.15■□□□□ 0.5
VPS9D1-203ENST00000563798 PNOCQ13519 176 aa18.15■□□□□ 0.5
VPS9D1-203ENST00000563798 SF3A2Q15428 464 aaKnown RBP18.15■□□□□ 0.5
VPS9D1-203ENST00000563798 AASDHQ4L235 1098 aaPredicted RBP18.15■□□□□ 0.5
VPS9D1-203ENST00000563798 ZNF658Q5TYW1 1059 aaPredicted RBP18.15■□□□□ 0.5
VPS9D1-203ENST00000563798 EMC10Q5UCC4 262 aa18.15■□□□□ 0.5
VPS9D1-203ENST00000563798 PMS2CLQ68D20 193 aa18.15■□□□□ 0.5
VPS9D1-203ENST00000563798 C12orf50Q8NA57 414 aaPredicted RBP18.15■□□□□ 0.5
VPS9D1-203ENST00000563798 TXNDC5Q8NBS9 432 aaKnown RBP18.15■□□□□ 0.5
VPS9D1-203ENST00000563798 MDGA1Q8NFP4 955 aa18.15■□□□□ 0.5
VPS9D1-203ENST00000563798 GTPBP4Q9BZE4 634 aaKnown RBP18.15■□□□□ 0.5
VPS9D1-203ENST00000563798 NMUR1Q9HB89 426 aa18.15■□□□□ 0.5
VPS9D1-203ENST00000563798 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.15■□□□□ 0.5
VPS9D1-203ENST00000563798 CLIC5Q9NZA1 410 aa18.15■□□□□ 0.5
VPS9D1-203ENST00000563798 DEC1Q9P2X7 70 aa18.15■□□□□ 0.5
VPS9D1-203ENST00000563798 SLC16A3O15427 465 aaKnown RBP18.14■□□□□ 0.49
VPS9D1-203ENST00000563798 ADAM23O75077 832 aa18.14■□□□□ 0.49
VPS9D1-203ENST00000563798 KLF8O95600 359 aaPredicted RBP18.14■□□□□ 0.49
VPS9D1-203ENST00000563798 EPB41P11171 864 aaKnown RBP18.14■□□□□ 0.49
VPS9D1-203ENST00000563798 TIE1P35590 1138 aa18.14■□□□□ 0.49
VPS9D1-203ENST00000563798 PRCPP42785 496 aa18.14■□□□□ 0.49
VPS9D1-203ENST00000563798 PLA2G4AP47712 749 aa18.14■□□□□ 0.49
VPS9D1-203ENST00000563798 GOLGA8FQ08AF8 430 aa18.14■□□□□ 0.49
VPS9D1-203ENST00000563798 GOLGA8DPQ0D2H9 430 aa18.14■□□□□ 0.49
VPS9D1-203ENST00000563798 PPP1R26Q5T8A7 1209 aaPredicted RBP18.14■□□□□ 0.49
VPS9D1-203ENST00000563798 ARHGAP17Q68EM7 881 aa18.14■□□□□ 0.49
VPS9D1-203ENST00000563798 ANO7Q6IWH7 933 aa18.14■□□□□ 0.49
VPS9D1-203ENST00000563798 Q6ZNB5 142 aa18.14■□□□□ 0.49
VPS9D1-203ENST00000563798 NUDT18Q6ZVK8 323 aa18.14■□□□□ 0.49
VPS9D1-203ENST00000563798 SCD5Q86SK9 330 aa18.14■□□□□ 0.49
VPS9D1-203ENST00000563798 SMYD4Q8IYR2 804 aaPredicted RBP18.14■□□□□ 0.49
VPS9D1-203ENST00000563798 TERB1Q8NA31 727 aa18.14■□□□□ 0.49
VPS9D1-203ENST00000563798 TIGD1Q96MW7 591 aa18.14■□□□□ 0.49
VPS9D1-203ENST00000563798 MMRN2Q9H8L6 949 aa18.14■□□□□ 0.49
VPS9D1-203ENST00000563798 POLMQ9NP87 494 aaPredicted RBP18.14■□□□□ 0.49
VPS9D1-203ENST00000563798 CISHQ9NSE2 258 aa18.14■□□□□ 0.49
VPS9D1-203ENST00000563798 DNMT3LQ9UJW3 386 aa18.14■□□□□ 0.49
VPS9D1-203ENST00000563798 GTF3C3Q9Y5Q9 886 aa18.14■□□□□ 0.49
VPS9D1-203ENST00000563798 MYOFQ9NZM1 2061 aa18.13■□□□□ 0.49
VPS9D1-203ENST00000563798 SDK1Q7Z5N4 2213 aa18.13■□□□□ 0.49
VPS9D1-203ENST00000563798 A0A1W2PQH9 124 aa18.13■□□□□ 0.49
VPS9D1-203ENST00000563798 CACNG3O60359 315 aa18.13■□□□□ 0.49
VPS9D1-203ENST00000563798 ADRB1P08588 477 aa18.13■□□□□ 0.49
VPS9D1-203ENST00000563798 RARGP13631 454 aa18.13■□□□□ 0.49
VPS9D1-203ENST00000563798 P2RY2P41231 377 aa18.13■□□□□ 0.49
VPS9D1-203ENST00000563798 RAD23BP54727 409 aa18.13■□□□□ 0.49
VPS9D1-203ENST00000563798 FKBP3Q00688 224 aaKnown RBP18.13■□□□□ 0.49
VPS9D1-203ENST00000563798 KDSRQ06136 332 aa18.13■□□□□ 0.49
VPS9D1-203ENST00000563798 CCDC6Q16204 474 aa18.13■□□□□ 0.49
VPS9D1-203ENST00000563798 TRMT11Q7Z4G4 463 aaKnown RBP18.13■□□□□ 0.49
VPS9D1-203ENST00000563798 TADA2BQ86TJ2 420 aa18.13■□□□□ 0.49
VPS9D1-203ENST00000563798 SLC4A11Q8NBS3 891 aa18.13■□□□□ 0.49
VPS9D1-203ENST00000563798 TMEM176AQ96HP8 235 aa18.13■□□□□ 0.49
VPS9D1-203ENST00000563798 CDK5RAP1Q96SZ6 601 aaKnown RBP18.13■□□□□ 0.49
VPS9D1-203ENST00000563798 TPSD1Q9BZJ3 242 aa18.13■□□□□ 0.49
VPS9D1-203ENST00000563798 RXFP3Q9NSD7 469 aa18.13■□□□□ 0.49
VPS9D1-203ENST00000563798 WDR35Q9P2L0 1181 aa18.13■□□□□ 0.49
VPS9D1-203ENST00000563798 LSM7Q9UK45 103 aaKnown RBP18.13■□□□□ 0.49
VPS9D1-203ENST00000563798 HCN2Q9UL51 889 aa18.13■□□□□ 0.49
VPS9D1-203ENST00000563798 TBC1D3BA6NDS4 549 aa18.12■□□□□ 0.49
VPS9D1-203ENST00000563798 IRF1P10914 325 aa18.12■□□□□ 0.49
VPS9D1-203ENST00000563798 NUCB2P80303 420 aa18.12■□□□□ 0.49
VPS9D1-203ENST00000563798 LRRC63Q05C16 580 aa18.12■□□□□ 0.49
VPS9D1-203ENST00000563798 ANO4Q32M45 955 aa18.12■□□□□ 0.49
VPS9D1-203ENST00000563798 PPM1JQ5JR12 505 aa18.12■□□□□ 0.49
VPS9D1-203ENST00000563798 RAB41Q5JT25 222 aa18.12■□□□□ 0.49
VPS9D1-203ENST00000563798 STPG1Q5TH74 334 aa18.12■□□□□ 0.49
VPS9D1-203ENST00000563798 ELOA2Q8IYF1 753 aaPredicted RBP18.12■□□□□ 0.49
VPS9D1-203ENST00000563798 NAT16Q8N8M0 369 aa18.12■□□□□ 0.49
VPS9D1-203ENST00000563798 EEF2KMTQ96G04 330 aa18.12■□□□□ 0.49
VPS9D1-203ENST00000563798 HEXIM2Q96MH2 286 aaKnown RBP18.12■□□□□ 0.49
VPS9D1-203ENST00000563798 MYH10P35580 1976 aa18.11■□□□□ 0.49
VPS9D1-203ENST00000563798 SMC2O95347 1197 aa18.11■□□□□ 0.49
VPS9D1-203ENST00000563798 CAVIN2O95810 425 aa18.11■□□□□ 0.49
VPS9D1-203ENST00000563798 BCKDHBP21953 392 aa18.11■□□□□ 0.49
VPS9D1-203ENST00000563798 GBP1P32455 592 aa18.11■□□□□ 0.49
VPS9D1-203ENST00000563798 CREB5Q02930 508 aa18.11■□□□□ 0.49
VPS9D1-203ENST00000563798 CBWD6Q4V339 395 aa18.11■□□□□ 0.49
VPS9D1-203ENST00000563798 ZNF394Q53GI3 561 aa18.11■□□□□ 0.49
VPS9D1-203ENST00000563798 CBWD3Q5JTY5 395 aa18.11■□□□□ 0.49
VPS9D1-203ENST00000563798 SPDYCQ5MJ68 293 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 92.6 ms