RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 ZNF840PA6NDX5 716 aa17.37■□□□□ 0.37
VPS4A-202ENST00000562754 TMEM191CA6NGB0 347 aa17.37■□□□□ 0.37
VPS4A-202ENST00000562754 C2CD4BA6NLJ0 364 aa17.37■□□□□ 0.37
VPS4A-202ENST00000562754 BTNL10A8MVZ5 291 aa17.37■□□□□ 0.37
VPS4A-202ENST00000562754 RHOP08100 348 aa17.37■□□□□ 0.37
VPS4A-202ENST00000562754 MYL4P12829 197 aa17.37■□□□□ 0.37
VPS4A-202ENST00000562754 FOSL2P15408 326 aa17.37■□□□□ 0.37
VPS4A-202ENST00000562754 PTPN2P17706 415 aa17.37■□□□□ 0.37
VPS4A-202ENST00000562754 GABRR2P28476 465 aa17.37■□□□□ 0.37
VPS4A-202ENST00000562754 RNASE9P60153 205 aaKnown RBP17.37■□□□□ 0.37
VPS4A-202ENST00000562754 YWHAZP63104 245 aaKnown RBP17.37■□□□□ 0.37
VPS4A-202ENST00000562754 ZNF252P-AS1Q0IIN9 211 aa17.37■□□□□ 0.37
VPS4A-202ENST00000562754 KIF5AQ12840 1032 aa17.37■□□□□ 0.37
VPS4A-202ENST00000562754 SLC5A9Q2M3M2 681 aa17.37■□□□□ 0.37
VPS4A-202ENST00000562754 GRASPQ7Z6J2 395 aaPredicted RBP17.37■□□□□ 0.37
VPS4A-202ENST00000562754 RHOT2Q8IXI1 618 aa17.37■□□□□ 0.37
VPS4A-202ENST00000562754 DEFB106AQ8N104 65 aa17.37■□□□□ 0.37
VPS4A-202ENST00000562754 CCAR2Q8N163 923 aaKnown RBP17.37■□□□□ 0.37
VPS4A-202ENST00000562754 TXLNBQ8N3L3 684 aa17.37■□□□□ 0.37
VPS4A-202ENST00000562754 PDZD8Q8NEN9 1154 aa17.37■□□□□ 0.37
VPS4A-202ENST00000562754 KIAA1524Q8TCG1 905 aa17.37■□□□□ 0.37
VPS4A-202ENST00000562754 EDEM1Q92611 657 aa17.37■□□□□ 0.37
VPS4A-202ENST00000562754 PABPC5Q96DU9 382 aaKnown RBP17.37■□□□□ 0.37
VPS4A-202ENST00000562754 BTBD6Q96KE9 485 aa17.37■□□□□ 0.37
VPS4A-202ENST00000562754 MRPL47Q9HD33 250 aaKnown RBP17.37■□□□□ 0.37
VPS4A-202ENST00000562754 TLR8Q9NR97 1041 aaKnown RBP17.37■□□□□ 0.37
VPS4A-202ENST00000562754 TRMT1Q9NXH9 659 aaKnown RBP17.37■□□□□ 0.37
VPS4A-202ENST00000562754 DENND4AQ7Z401 1863 aa17.37■□□□□ 0.37
VPS4A-202ENST00000562754 NCK2O43639 380 aa17.36■□□□□ 0.37
VPS4A-202ENST00000562754 MOSPD3O75425 235 aa17.36■□□□□ 0.37
VPS4A-202ENST00000562754 GJA1P17302 382 aa17.36■□□□□ 0.37
VPS4A-202ENST00000562754 HOXB8P17481 243 aaPredicted RBP17.36■□□□□ 0.37
VPS4A-202ENST00000562754 HADHBP55084 474 aaKnown RBP17.36■□□□□ 0.37
VPS4A-202ENST00000562754 PITX1P78337 314 aaPredicted RBP17.36■□□□□ 0.37
VPS4A-202ENST00000562754 CYP4F8P98187 520 aa17.36■□□□□ 0.37
VPS4A-202ENST00000562754 PABPC1LQ4VXU2 614 aaKnown RBP17.36■□□□□ 0.37
VPS4A-202ENST00000562754 PRSS36Q5K4E3 855 aa17.36■□□□□ 0.37
VPS4A-202ENST00000562754 OTUD1Q5VV17 481 aaPredicted RBP17.36■□□□□ 0.37
VPS4A-202ENST00000562754 SNX30Q5VWJ9 437 aa17.36■□□□□ 0.37
VPS4A-202ENST00000562754 SYPL2Q5VXT5 272 aa17.36■□□□□ 0.37
VPS4A-202ENST00000562754 DCUN1D2Q6PH85 259 aa17.36■□□□□ 0.37
VPS4A-202ENST00000562754 ARCQ7LC44 396 aa17.36■□□□□ 0.37
VPS4A-202ENST00000562754 GPR149Q86SP6 731 aa17.36■□□□□ 0.37
VPS4A-202ENST00000562754 ARHGAP18Q8N392 663 aa17.36■□□□□ 0.37
VPS4A-202ENST00000562754 SHKBP1Q8TBC3 707 aa17.36■□□□□ 0.37
VPS4A-202ENST00000562754 RXFP2Q8WXD0 754 aa17.36■□□□□ 0.37
VPS4A-202ENST00000562754 TCEAL4Q96EI5 215 aa17.36■□□□□ 0.37
VPS4A-202ENST00000562754 MSLNLQ96KJ4 702 aa17.36■□□□□ 0.37
VPS4A-202ENST00000562754 ADAM33Q9BZ11 813 aa17.36■□□□□ 0.37
VPS4A-202ENST00000562754 S1PR5Q9H228 398 aa17.36■□□□□ 0.37
VPS4A-202ENST00000562754 PIDD1Q9HB75 910 aa17.36■□□□□ 0.37
VPS4A-202ENST00000562754 POPDC2Q9HBU9 364 aa17.36■□□□□ 0.37
VPS4A-202ENST00000562754 LZTFL1Q9NQ48 299 aa17.36■□□□□ 0.37
VPS4A-202ENST00000562754 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.36■□□□□ 0.37
VPS4A-202ENST00000562754 CLIC5Q9NZA1 410 aa17.36■□□□□ 0.37
VPS4A-202ENST00000562754 TRPM5Q9NZQ8 1165 aa17.36■□□□□ 0.37
VPS4A-202ENST00000562754 ANAPC7Q9UJX3 599 aa17.36■□□□□ 0.37
VPS4A-202ENST00000562754 NAALADL1Q9UQQ1 740 aa17.36■□□□□ 0.37
VPS4A-202ENST00000562754 A0A1W2PRU2 124 aa17.35■□□□□ 0.37
VPS4A-202ENST00000562754 MACROD2A1Z1Q3 448 aa17.35■□□□□ 0.37
VPS4A-202ENST00000562754 DPYSL4O14531 572 aa17.35■□□□□ 0.37
VPS4A-202ENST00000562754 ZSCAN12O43309 604 aa17.35■□□□□ 0.37
VPS4A-202ENST00000562754 BUB1O43683 1085 aa17.35■□□□□ 0.37
VPS4A-202ENST00000562754 TFE3P19532 575 aaPredicted RBP17.35■□□□□ 0.37
VPS4A-202ENST00000562754 CDC25CP30307 473 aa17.35■□□□□ 0.37
VPS4A-202ENST00000562754 MATKP42679 507 aa17.35■□□□□ 0.37
VPS4A-202ENST00000562754 PSEN1P49768 467 aa17.35■□□□□ 0.37
VPS4A-202ENST00000562754 CCDC85BQ15834 202 aaPredicted RBP17.35■□□□□ 0.37
VPS4A-202ENST00000562754 BTBD8Q5XKL5 378 aa17.35■□□□□ 0.37
VPS4A-202ENST00000562754 EP400NLQ6ZTU2 488 aa17.35■□□□□ 0.37
VPS4A-202ENST00000562754 PDZD4Q76G19 769 aaPredicted RBP17.35■□□□□ 0.37
VPS4A-202ENST00000562754 BEND5Q7L4P6 421 aa17.35■□□□□ 0.37
VPS4A-202ENST00000562754 GOLGA1Q92805 767 aa17.35■□□□□ 0.37
VPS4A-202ENST00000562754 DDX23Q9BUQ8 820 aaKnown RBP17.35■□□□□ 0.37
VPS4A-202ENST00000562754 TSGA10Q9BZW7 698 aa17.35■□□□□ 0.37
VPS4A-202ENST00000562754 CCSER2Q9H7U1 834 aa17.35■□□□□ 0.37
VPS4A-202ENST00000562754 KCND1Q9NSA2 647 aa17.35■□□□□ 0.37
VPS4A-202ENST00000562754 ABCC13Q9NSE7 274 aa17.35■□□□□ 0.37
VPS4A-202ENST00000562754 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.35■□□□□ 0.37
VPS4A-202ENST00000562754 NUDT5Q9UKK9 219 aa17.35■□□□□ 0.37
VPS4A-202ENST00000562754 GUCA1BQ9UMX6 200 aa17.35■□□□□ 0.37
VPS4A-202ENST00000562754 PAXBP1Q9Y5B6 917 aa17.35■□□□□ 0.37
VPS4A-202ENST00000562754 C2orf78A6NCI8 922 aa17.34■□□□□ 0.37
VPS4A-202ENST00000562754 KRT86O43790 486 aa17.34■□□□□ 0.37
VPS4A-202ENST00000562754 TLR5O60602 858 aa17.34■□□□□ 0.37
VPS4A-202ENST00000562754 OAS1P00973 400 aaKnown RBP17.34■□□□□ 0.37
VPS4A-202ENST00000562754 NCAM1P13591 858 aa17.34■□□□□ 0.37
VPS4A-202ENST00000562754 RARGP13631 454 aa17.34■□□□□ 0.37
VPS4A-202ENST00000562754 PDGFRAP16234 1089 aa17.34■□□□□ 0.37
VPS4A-202ENST00000562754 GPD1P21695 349 aa17.34■□□□□ 0.37
VPS4A-202ENST00000562754 PPP3CCP48454 512 aa17.34■□□□□ 0.37
VPS4A-202ENST00000562754 ARHGAP29Q52LW3 1261 aa17.34■□□□□ 0.37
VPS4A-202ENST00000562754 DCAF6Q58WW2 860 aa17.34■□□□□ 0.37
VPS4A-202ENST00000562754 STXBP5Q5T5C0 1151 aa17.34■□□□□ 0.37
VPS4A-202ENST00000562754 MSANTD2Q6P1R3 559 aa17.34■□□□□ 0.37
VPS4A-202ENST00000562754 CPNE8Q86YQ8 564 aa17.34■□□□□ 0.37
VPS4A-202ENST00000562754 LEMD2Q8NC56 503 aa17.34■□□□□ 0.37
VPS4A-202ENST00000562754 TPCN2Q8NHX9 752 aa17.34■□□□□ 0.37
VPS4A-202ENST00000562754 DQX1Q8TE96 717 aaKnown RBP17.34■□□□□ 0.37
VPS4A-202ENST00000562754 FNIP1Q8TF40 1166 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms