RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 CCDC106Q9BWC9 280 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 CCSER2Q9H7U1 834 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 MAGEF1Q9HAY2 307 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 SCUBE2Q9NQ36 999 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 POLHQ9Y253 713 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 TRIM77I1YAP6 450 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 hCG_2039718K7EN88 272 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 TOM1O60784 492 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 IFIT1P09914 478 aaKnown RBP14.29□□□□□ -0.12
SHMT2-226ENST00000556825 KRT3P12035 628 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 GRK2P25098 689 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 TRAPPC10P48553 1259 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 ATN1P54259 1190 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-226ENST00000556825 IKQ13123 557 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-226ENST00000556825 ZYXQ15942 572 aaKnown RBP14.29□□□□□ -0.12
SHMT2-226ENST00000556825 INAVAQ3KP66 663 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 LRIT3Q3SXY7 679 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 MDH1BQ5I0G3 518 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 SLC10A5Q5PT55 438 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 UBE2UQ5VVX9 321 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 PRPF39Q86UA1 669 aaKnown RBP14.29□□□□□ -0.12
SHMT2-226ENST00000556825 KIAA0895Q8NCT3 520 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 GRIN3AQ8TCU5 1115 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 JDP2Q8WYK2 163 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 TRIM63Q969Q1 353 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 ZNF717Q9BY31 904 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-226ENST00000556825 ZNF341Q9BYN7 854 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 GANQ9H2C0 597 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 SERHL2Q9H4I8 314 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 TCF7L2Q9NQB0 619 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 TXNDC16Q9P2K2 825 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 PPARGC1AQ9UBK2 798 aaKnown RBP14.29□□□□□ -0.12
SHMT2-226ENST00000556825 ARHGAP26Q9UNA1 814 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 SLC8A2Q9UPR5 921 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 IL1BP01584 269 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 ADRA1DP25100 572 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 TTKP33981 857 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 RFC1P35251 1148 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-226ENST00000556825 STX3Q13277 289 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 UBE3CQ15386 1083 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 AADACL2Q6P093 401 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 LRRC55Q6ZSA7 311 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 RELL1Q8IUW5 271 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 SEPT12Q8IYM1 358 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 HIPK4Q8NE63 616 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 ASIC4Q96FT7 647 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 RMND5BQ96G75 393 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-226ENST00000556825 ZNF347Q96SE7 839 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 C7orf25Q9BPX7 421 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 TRIM9Q9C026 710 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 WNT8AQ9H1J5 351 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 SYTL2Q9HCH5 934 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 KCNK4Q9NYG8 393 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 DNMT3BQ9UBC3 853 aaKnown RBP14.29□□□□□ -0.12
SHMT2-226ENST00000556825 POMPQ9Y244 141 aa14.29□□□□□ -0.12
SHMT2-226ENST00000556825 HEG1Q9ULI3 1381 aa14.28□□□□□ -0.12
SHMT2-226ENST00000556825 NCANO14594 1321 aa14.28□□□□□ -0.12
SHMT2-226ENST00000556825 ACSL4O60488 711 aa14.28□□□□□ -0.12
SHMT2-226ENST00000556825 NMT1P30419 496 aaKnown RBP14.28□□□□□ -0.12
SHMT2-226ENST00000556825 MCM7P33993 719 aa14.28□□□□□ -0.12
SHMT2-226ENST00000556825 HPCAL1P37235 193 aa14.28□□□□□ -0.12
SHMT2-226ENST00000556825 ECT2LQ008S8 904 aa14.28□□□□□ -0.12
SHMT2-226ENST00000556825 FKBP4Q02790 459 aaKnown RBP eCLIP14.28□□□□□ -0.12
SHMT2-226ENST00000556825 MTMR2Q13614 643 aa14.28□□□□□ -0.12
SHMT2-226ENST00000556825 ADGRE1Q14246 886 aa14.28□□□□□ -0.12
SHMT2-226ENST00000556825 ZNF846Q147U1 533 aa14.28□□□□□ -0.12
SHMT2-226ENST00000556825 PGS1Q32NB8 556 aa14.28□□□□□ -0.12
SHMT2-226ENST00000556825 CMTR1Q8N1G2 835 aaKnown RBP14.28□□□□□ -0.12
SHMT2-226ENST00000556825 SLC35G2Q8TBE7 412 aa14.28□□□□□ -0.12
SHMT2-226ENST00000556825 CLSTN3Q9BQT9 956 aa14.28□□□□□ -0.12
SHMT2-226ENST00000556825 RNF26Q9BY78 433 aaPredicted RBP14.28□□□□□ -0.12
SHMT2-226ENST00000556825 CXorf21Q9HAI6 301 aa14.28□□□□□ -0.12
SHMT2-226ENST00000556825 OSGEPQ9NPF4 335 aa14.28□□□□□ -0.12
SHMT2-226ENST00000556825 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.28□□□□□ -0.12
SHMT2-226ENST00000556825 SIPA1L3O60292 1781 aaPredicted RBP14.27□□□□□ -0.12
SHMT2-226ENST00000556825 A0A087WXM4 84 aa14.27□□□□□ -0.12
SHMT2-226ENST00000556825 A0A0B4J203 849 aa14.27□□□□□ -0.12
SHMT2-226ENST00000556825 FAM237BA0A1B0GVD1 139 aa14.27□□□□□ -0.12
SHMT2-226ENST00000556825 EXOC1LA0A1B0GW35 172 aa14.27□□□□□ -0.12
SHMT2-226ENST00000556825 OR5K4A6NMS3 321 aa14.27□□□□□ -0.12
SHMT2-226ENST00000556825 TK2O00142 265 aa14.27□□□□□ -0.12
SHMT2-226ENST00000556825 ATP2A1O14983 1001 aa14.27□□□□□ -0.12
SHMT2-226ENST00000556825 CAPNS1P04632 268 aa14.27□□□□□ -0.12
SHMT2-226ENST00000556825 KRT10P13645 584 aa14.27□□□□□ -0.12
SHMT2-226ENST00000556825 TNNI2P48788 182 aa14.27□□□□□ -0.12
SHMT2-226ENST00000556825 EPHB1P54762 984 aa14.27□□□□□ -0.12
SHMT2-226ENST00000556825 ASIC1P78348 528 aa14.27□□□□□ -0.12
SHMT2-226ENST00000556825 SLC25A3Q00325 362 aa14.27□□□□□ -0.12
SHMT2-226ENST00000556825 GALK2Q01415 458 aa14.27□□□□□ -0.12
SHMT2-226ENST00000556825 PRKD1Q15139 912 aaPredicted RBP14.27□□□□□ -0.12
SHMT2-226ENST00000556825 NEK5Q6P3R8 708 aa14.27□□□□□ -0.12
SHMT2-226ENST00000556825 FIP1L1Q6UN15 594 aaKnown RBP14.27□□□□□ -0.12
SHMT2-226ENST00000556825 DEPDC4Q8N2C3 294 aa14.27□□□□□ -0.12
SHMT2-226ENST00000556825 ANKRD53Q8N9V6 530 aa14.27□□□□□ -0.12
SHMT2-226ENST00000556825 PDPRQ8NCN5 879 aa14.27□□□□□ -0.12
SHMT2-226ENST00000556825 ZC3H15Q8WU90 426 aaKnown RBP14.27□□□□□ -0.12
SHMT2-226ENST00000556825 SLCO2A1Q92959 643 aa14.27□□□□□ -0.12
SHMT2-226ENST00000556825 ACDQ96AP0 544 aa14.27□□□□□ -0.12
SHMT2-226ENST00000556825 CFAP36Q96G28 342 aa14.27□□□□□ -0.12
SHMT2-226ENST00000556825 C1orf74Q96LT6 269 aa14.27□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms