RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 WDR5BQ86VZ2 330 aa16.88■□□□□ 0.29
CCDC88C-209ENST00000554872 PPM1KQ8N3J5 372 aa16.88■□□□□ 0.29
CCDC88C-209ENST00000554872 CAMKK1Q8N5S9 505 aa16.88■□□□□ 0.29
CCDC88C-209ENST00000554872 KCTD13Q8WZ19 329 aa16.88■□□□□ 0.29
CCDC88C-209ENST00000554872 RUBCNQ92622 972 aa16.88■□□□□ 0.29
CCDC88C-209ENST00000554872 ACDQ96AP0 544 aa16.88■□□□□ 0.29
CCDC88C-209ENST00000554872 FAM81BQ96LP2 452 aa16.88■□□□□ 0.29
CCDC88C-209ENST00000554872 HESX1Q9UBX0 185 aa16.88■□□□□ 0.29
CCDC88C-209ENST00000554872 GTPBP10A4D1E9 387 aaKnown RBP16.87■□□□□ 0.29
CCDC88C-209ENST00000554872 CHRM1P11229 460 aaPredicted RBP16.87■□□□□ 0.29
CCDC88C-209ENST00000554872 RALAP11233 206 aa16.87■□□□□ 0.29
CCDC88C-209ENST00000554872 ADH5P11766 374 aa16.87■□□□□ 0.29
CCDC88C-209ENST00000554872 RARGP13631 454 aa16.87■□□□□ 0.29
CCDC88C-209ENST00000554872 CNGA2Q16280 664 aa16.87■□□□□ 0.29
CCDC88C-209ENST00000554872 GOLGA7BQ2TAP0 167 aa16.87■□□□□ 0.29
CCDC88C-209ENST00000554872 HSF5Q4G112 596 aaPredicted RBP16.87■□□□□ 0.29
CCDC88C-209ENST00000554872 CT47A1Q5JQC4 288 aaPredicted RBP16.87■□□□□ 0.29
CCDC88C-209ENST00000554872 PKN3Q6P5Z2 889 aa16.87■□□□□ 0.29
CCDC88C-209ENST00000554872 Q6ZNB5 142 aa16.87■□□□□ 0.29
CCDC88C-209ENST00000554872 ENOSF1Q7L5Y1 443 aa16.87■□□□□ 0.29
CCDC88C-209ENST00000554872 BHLHA9Q7RTU4 235 aa16.87■□□□□ 0.29
CCDC88C-209ENST00000554872 BBS7Q8IWZ6 715 aa16.87■□□□□ 0.29
CCDC88C-209ENST00000554872 ETFBKMTQ8IXQ9 262 aa16.87■□□□□ 0.29
CCDC88C-209ENST00000554872 TTC16Q8NEE8 873 aa16.87■□□□□ 0.29
CCDC88C-209ENST00000554872 CNOT6LQ96LI5 555 aaKnown RBP16.87■□□□□ 0.29
CCDC88C-209ENST00000554872 SPHK2Q9NRA0 654 aa16.87■□□□□ 0.29
CCDC88C-209ENST00000554872 C2orf42Q9NWW7 574 aa16.87■□□□□ 0.29
CCDC88C-209ENST00000554872 MARK1Q9P0L2 795 aa16.87■□□□□ 0.29
CCDC88C-209ENST00000554872 NAGPAQ9UK23 515 aa16.87■□□□□ 0.29
CCDC88C-209ENST00000554872 LSM7Q9UK45 103 aaKnown RBP16.87■□□□□ 0.29
CCDC88C-209ENST00000554872 SMG5Q9UPR3 1016 aaKnown RBP16.87■□□□□ 0.29
CCDC88C-209ENST00000554872 TBX18O95935 607 aa16.86■□□□□ 0.29
CCDC88C-209ENST00000554872 ERCC5P28715 1186 aaPredicted RBP16.86■□□□□ 0.29
CCDC88C-209ENST00000554872 GAD2Q05329 585 aa16.86■□□□□ 0.29
CCDC88C-209ENST00000554872 PDE4CQ08493 712 aa16.86■□□□□ 0.29
CCDC88C-209ENST00000554872 LRMPQ12912 555 aa16.86■□□□□ 0.29
CCDC88C-209ENST00000554872 PREPLQ4J6C6 727 aaPredicted RBP16.86■□□□□ 0.29
CCDC88C-209ENST00000554872 LY6G5CQ5SRR4 150 aa16.86■□□□□ 0.29
CCDC88C-209ENST00000554872 TMEM270Q6UE05 265 aa16.86■□□□□ 0.29
CCDC88C-209ENST00000554872 IRF2BP1Q8IU81 584 aa16.86■□□□□ 0.29
CCDC88C-209ENST00000554872 PHTF2Q8N3S3 785 aa16.86■□□□□ 0.29
CCDC88C-209ENST00000554872 PNKPQ96T60 521 aa16.86■□□□□ 0.29
CCDC88C-209ENST00000554872 INTS2Q9H0H0 1204 aaKnown RBP16.86■□□□□ 0.29
CCDC88C-209ENST00000554872 CNGB3Q9NQW8 809 aa16.86■□□□□ 0.29
CCDC88C-209ENST00000554872 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.86■□□□□ 0.29
CCDC88C-209ENST00000554872 ZNF510Q9Y2H8 683 aa16.86■□□□□ 0.29
CCDC88C-209ENST00000554872 K7EQS6 105 aa16.85■□□□□ 0.29
CCDC88C-209ENST00000554872 ZBED1O96006 694 aa16.85■□□□□ 0.29
CCDC88C-209ENST00000554872 CD19P15391 556 aa16.85■□□□□ 0.29
CCDC88C-209ENST00000554872 GRIA2P42262 883 aa16.85■□□□□ 0.29
CCDC88C-209ENST00000554872 TKTL1P51854 596 aa16.85■□□□□ 0.29
CCDC88C-209ENST00000554872 MRPS21P82921 87 aaKnown RBP16.85■□□□□ 0.29
CCDC88C-209ENST00000554872 COG7P83436 770 aa16.85■□□□□ 0.29
CCDC88C-209ENST00000554872 C10orf120Q5SQS8 335 aa16.85■□□□□ 0.29
CCDC88C-209ENST00000554872 ARHGEF19Q8IW93 802 aa16.85■□□□□ 0.29
CCDC88C-209ENST00000554872 RBBP8NLQ8NC74 664 aaPredicted RBP16.85■□□□□ 0.29
CCDC88C-209ENST00000554872 KCNV2Q8TDN2 545 aa16.85■□□□□ 0.29
CCDC88C-209ENST00000554872 USP33Q8TEY7 942 aa16.85■□□□□ 0.29
CCDC88C-209ENST00000554872 SLC35F5Q8WV83 523 aa16.85■□□□□ 0.29
CCDC88C-209ENST00000554872 TFAP2BQ92481 460 aa16.85■□□□□ 0.29
CCDC88C-209ENST00000554872 KAT5Q92993 513 aa16.85■□□□□ 0.29
CCDC88C-209ENST00000554872 WBP2Q969T9 261 aa16.85■□□□□ 0.29
CCDC88C-209ENST00000554872 KREMEN1Q96MU8 473 aa16.85■□□□□ 0.29
CCDC88C-209ENST00000554872 NUP62CLQ9H1M0 184 aa16.85■□□□□ 0.29
CCDC88C-209ENST00000554872 THAP9Q9H5L6 903 aa16.85■□□□□ 0.29
CCDC88C-209ENST00000554872 LMBRD1Q9NUN5 540 aa16.85■□□□□ 0.29
CCDC88C-209ENST00000554872 DACH1Q9UI36 760 aa16.85■□□□□ 0.29
CCDC88C-209ENST00000554872 PCDHB4Q9Y5E5 795 aa16.85■□□□□ 0.29
CCDC88C-209ENST00000554872 RNF225M0QZC1 329 aaPredicted RBP16.84■□□□□ 0.29
CCDC88C-209ENST00000554872 TULP2O00295 520 aa16.84■□□□□ 0.29
CCDC88C-209ENST00000554872 CACNG3O60359 315 aa16.84■□□□□ 0.29
CCDC88C-209ENST00000554872 STC2O76061 302 aa16.84■□□□□ 0.29
CCDC88C-209ENST00000554872 TNFRSF4P43489 277 aa16.84■□□□□ 0.29
CCDC88C-209ENST00000554872 FNTBP49356 437 aa16.84■□□□□ 0.29
CCDC88C-209ENST00000554872 YWHAGP61981 247 aaKnown RBP eCLIP16.84■□□□□ 0.29
CCDC88C-209ENST00000554872 DMWDQ09019 674 aa16.84■□□□□ 0.29
CCDC88C-209ENST00000554872 GPR161Q8N6U8 529 aaKnown RBP16.84■□□□□ 0.29
CCDC88C-209ENST00000554872 RPLP0P6Q8NHW5 317 aa16.84■□□□□ 0.29
CCDC88C-209ENST00000554872 HSFY1Q96LI6 401 aa16.84■□□□□ 0.29
CCDC88C-209ENST00000554872 ZSWIM1Q9BR11 485 aa16.84■□□□□ 0.29
CCDC88C-209ENST00000554872 DCLK3Q9C098 648 aa16.84■□□□□ 0.29
CCDC88C-209ENST00000554872 LRRC4Q9HBW1 653 aa16.84■□□□□ 0.29
CCDC88C-209ENST00000554872 OLA1Q9NTK5 396 aaKnown RBP16.84■□□□□ 0.29
CCDC88C-209ENST00000554872 EBF1Q9UH73 591 aa16.84■□□□□ 0.29
CCDC88C-209ENST00000554872 SLC8A2Q9UPR5 921 aa16.84■□□□□ 0.29
CCDC88C-209ENST00000554872 DMXL1Q9Y485 3027 aa16.84■□□□□ 0.29
CCDC88C-209ENST00000554872 LRP3O75074 770 aa16.83■□□□□ 0.28
CCDC88C-209ENST00000554872 KAT7O95251 611 aa16.83■□□□□ 0.28
CCDC88C-209ENST00000554872 APODP05090 189 aa16.83■□□□□ 0.28
CCDC88C-209ENST00000554872 RPL34P49207 117 aaKnown RBP16.83■□□□□ 0.28
CCDC88C-209ENST00000554872 ADIGQ0VDE8 80 aa16.83■□□□□ 0.28
CCDC88C-209ENST00000554872 DPCR1Q3MIW9 517 aa16.83■□□□□ 0.28
CCDC88C-209ENST00000554872 BTBD8Q5XKL5 378 aa16.83■□□□□ 0.28
CCDC88C-209ENST00000554872 LAIR1Q6GTX8 287 aa16.83■□□□□ 0.28
CCDC88C-209ENST00000554872 TRIM65Q6PJ69 517 aa16.83■□□□□ 0.28
CCDC88C-209ENST00000554872 RBM43Q6ZSC3 357 aaKnown RBP16.83■□□□□ 0.28
CCDC88C-209ENST00000554872 RRAGAQ7L523 313 aa16.83■□□□□ 0.28
CCDC88C-209ENST00000554872 C12orf40Q86WS4 652 aa16.83■□□□□ 0.28
CCDC88C-209ENST00000554872 FAM114A1Q8IWE2 563 aa16.83■□□□□ 0.28
CCDC88C-209ENST00000554872 IRGQQ8WZA9 623 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms