RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 MXI1P50539 228 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 AMPD2Q01433 879 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 TAF10Q12962 218 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 ORC1Q13415 861 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 RUNX3Q13761 415 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 PPP2R5DQ14738 602 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 PON2Q15165 354 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 PDGFRLQ15198 375 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 ZNF528Q3MIS6 628 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 TRIM68Q6AZZ1 485 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 ASCL5Q7RTU5 278 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 CACNA2D4Q7Z3S7 1137 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 ZNF687Q8N1G0 1237 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 WDR24Q96S15 920 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 KCNK16Q96T55 309 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 FAM83CQ9BQN1 747 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 IER2Q9BTL4 223 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 LSM14BQ9BX40 385 aaKnown RBP13.12□□□□□ -0.31
SHMT2-214ENST00000554604 NIF3L1Q9GZT8 377 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 CHRDQ9H2X0 955 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 SEMA4AQ9H3S1 761 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 HAUS4Q9H6D7 363 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 NHEJ1Q9H9Q4 299 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-214ENST00000554604 CYP3A43Q9HB55 503 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 LZTFL1Q9NQ48 299 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 PLCB1Q9NQ66 1216 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 KRT82Q9NSB4 513 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 FAM207AQ9NSI2 230 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-214ENST00000554604 TMEM30AQ9NV96 361 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 GCNT4Q9P109 453 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 FRYLO94915 3013 aa13.11□□□□□ -0.31
SHMT2-214ENST00000554604 OTOGLQ3ZCN5 2332 aa13.11□□□□□ -0.31
SHMT2-214ENST00000554604 ZNF840PA6NDX5 716 aa13.11□□□□□ -0.31
SHMT2-214ENST00000554604 IPO7O95373 1038 aaKnown RBP13.11□□□□□ -0.31
SHMT2-214ENST00000554604 LCA5LO95447 670 aa13.11□□□□□ -0.31
SHMT2-214ENST00000554604 CHRNB1P11230 501 aa13.11□□□□□ -0.31
SHMT2-214ENST00000554604 CCDC130P13994 396 aa13.11□□□□□ -0.31
SHMT2-214ENST00000554604 CD58P19256 250 aa13.11□□□□□ -0.31
SHMT2-214ENST00000554604 IFNAR2P48551 515 aa13.11□□□□□ -0.31
SHMT2-214ENST00000554604 MAPK8IP2Q13387 824 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-214ENST00000554604 TUBB2AQ13885 445 aa13.11□□□□□ -0.31
SHMT2-214ENST00000554604 DCAF17Q5H9S7 520 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-214ENST00000554604 WDR44Q5JSH3 913 aa13.11□□□□□ -0.31
SHMT2-214ENST00000554604 DGKKQ5KSL6 1271 aa13.11□□□□□ -0.31
SHMT2-214ENST00000554604 TXNDC11Q6PKC3 985 aa13.11□□□□□ -0.31
SHMT2-214ENST00000554604 MTERF4Q7Z6M4 381 aaKnown RBP13.11□□□□□ -0.31
SHMT2-214ENST00000554604 MAML2Q8IZL2 1156 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-214ENST00000554604 FUKQ8N0W3 1084 aa13.11□□□□□ -0.31
SHMT2-214ENST00000554604 CRYBG2Q8N1P7 616 aa13.11□□□□□ -0.31
SHMT2-214ENST00000554604 CPA6Q8N4T0 437 aa13.11□□□□□ -0.31
SHMT2-214ENST00000554604 FBXL13Q8NEE6 735 aa13.11□□□□□ -0.31
SHMT2-214ENST00000554604 PDZD8Q8NEN9 1154 aa13.11□□□□□ -0.31
SHMT2-214ENST00000554604 SLC2A14Q8TDB8 520 aa13.11□□□□□ -0.31
SHMT2-214ENST00000554604 SH3RF2Q8TEC5 729 aa13.11□□□□□ -0.31
SHMT2-214ENST00000554604 ATRIPQ8WXE1 791 aa13.11□□□□□ -0.31
SHMT2-214ENST00000554604 ANKRD7Q92527 254 aa13.11□□□□□ -0.31
SHMT2-214ENST00000554604 ATP2A3Q93084 1043 aa13.11□□□□□ -0.31
SHMT2-214ENST00000554604 FBXO32Q969P5 355 aa13.11□□□□□ -0.31
SHMT2-214ENST00000554604 TUBB2BQ9BVA1 445 aa13.11□□□□□ -0.31
SHMT2-214ENST00000554604 NT5C1AQ9BXI3 368 aa13.11□□□□□ -0.31
SHMT2-214ENST00000554604 FAM49BQ9NUQ9 324 aa13.11□□□□□ -0.31
SHMT2-214ENST00000554604 DUS2Q9NX74 493 aaKnown RBP13.11□□□□□ -0.31
SHMT2-214ENST00000554604 HMGXB4Q9UGU5 601 aa13.11□□□□□ -0.31
SHMT2-214ENST00000554604 ARHGAP26Q9UNA1 814 aa13.11□□□□□ -0.31
SHMT2-214ENST00000554604 SSU72P8A0A1W2PR75 194 aa13.1□□□□□ -0.31
SHMT2-214ENST00000554604 LRRC53A6NM62 1247 aa13.1□□□□□ -0.31
SHMT2-214ENST00000554604 URI1O94763 535 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-214ENST00000554604 LMNAP02545 664 aaKnown RBP13.1□□□□□ -0.31
SHMT2-214ENST00000554604 ARSAP15289 507 aa13.1□□□□□ -0.31
SHMT2-214ENST00000554604 ADORA2BP29275 332 aa13.1□□□□□ -0.31
SHMT2-214ENST00000554604 CCR3P51677 355 aa13.1□□□□□ -0.31
SHMT2-214ENST00000554604 INCA1Q0VD86 236 aa13.1□□□□□ -0.31
SHMT2-214ENST00000554604 USP4Q13107 963 aa13.1□□□□□ -0.31
SHMT2-214ENST00000554604 NR1H3Q13133 447 aa13.1□□□□□ -0.31
SHMT2-214ENST00000554604 ZNF77Q15935 545 aa13.1□□□□□ -0.31
SHMT2-214ENST00000554604 PAQR9Q6ZVX9 377 aa13.1□□□□□ -0.31
SHMT2-214ENST00000554604 RRAGAQ7L523 313 aa13.1□□□□□ -0.31
SHMT2-214ENST00000554604 C12orf29Q8N999 325 aa13.1□□□□□ -0.31
SHMT2-214ENST00000554604 SCAMP5Q8TAC9 235 aa13.1□□□□□ -0.31
SHMT2-214ENST00000554604 RIN3Q8TB24 985 aa13.1□□□□□ -0.31
SHMT2-214ENST00000554604 OSCP1Q8WVF1 389 aa13.1□□□□□ -0.31
SHMT2-214ENST00000554604 SLC35C1Q96A29 364 aa13.1□□□□□ -0.31
SHMT2-214ENST00000554604 EXOC4Q96A65 974 aa13.1□□□□□ -0.31
SHMT2-214ENST00000554604 CCDC42Q96M95 316 aa13.1□□□□□ -0.31
SHMT2-214ENST00000554604 GANQ9H2C0 597 aa13.1□□□□□ -0.31
SHMT2-214ENST00000554604 APOBEC3GQ9HC16 384 aaKnown RBP13.1□□□□□ -0.31
SHMT2-214ENST00000554604 HPS4Q9NQG7 708 aa13.1□□□□□ -0.31
SHMT2-214ENST00000554604 RBM12Q9NTZ6 932 aaKnown RBP13.1□□□□□ -0.31
SHMT2-214ENST00000554604 RAB20Q9NX57 234 aa13.1□□□□□ -0.31
SHMT2-214ENST00000554604 ARHGAP20Q9P2F6 1191 aa13.1□□□□□ -0.31
SHMT2-214ENST00000554604 MYO6Q9UM54 1294 aa13.1□□□□□ -0.31
SHMT2-214ENST00000554604 WNT6Q9Y6F9 365 aa13.1□□□□□ -0.31
SHMT2-214ENST00000554604 SPAG17Q6Q759 2223 aa13.1□□□□□ -0.31
SHMT2-214ENST00000554604 RALGAPA1Q6GYQ0 2036 aa13.1□□□□□ -0.31
SHMT2-214ENST00000554604 SDK1Q7Z5N4 2213 aa13.09□□□□□ -0.31
SHMT2-214ENST00000554604 GPR179Q6PRD1 2367 aa13.09□□□□□ -0.31
SHMT2-214ENST00000554604 A0A0U1RQJ8 604 aa13.09□□□□□ -0.31
SHMT2-214ENST00000554604 OTOL1A6NHN0 477 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-214ENST00000554604 FAM200BP0CF97 657 aa13.09□□□□□ -0.31
SHMT2-214ENST00000554604 CXCL12P48061 93 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms