RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 HTRA3P83110 453 aa12.19□□□□□ -0.46
SHMT2-212ENST00000554467 SLC6A3Q01959 620 aa12.19□□□□□ -0.46
SHMT2-212ENST00000554467 SP3Q02447 781 aa12.19□□□□□ -0.46
SHMT2-212ENST00000554467 PCBP1Q15365 356 aaKnown RBP eCLIP12.19□□□□□ -0.46
SHMT2-212ENST00000554467 SV2CQ496J9 727 aa12.19□□□□□ -0.46
SHMT2-212ENST00000554467 XKR4Q5GH76 650 aa12.19□□□□□ -0.46
SHMT2-212ENST00000554467 B3GALNT2Q8NCR0 500 aa12.19□□□□□ -0.46
SHMT2-212ENST00000554467 ITFG2Q969R8 447 aa12.19□□□□□ -0.46
SHMT2-212ENST00000554467 MED10Q9BTT4 135 aa12.19□□□□□ -0.46
SHMT2-212ENST00000554467 SLC4A5Q9BY07 1137 aa12.19□□□□□ -0.46
SHMT2-212ENST00000554467 MLXIPLQ9NP71 852 aa12.19□□□□□ -0.46
SHMT2-212ENST00000554467 EIF4E1BA6NMX2 242 aaKnown RBP12.18□□□□□ -0.46
SHMT2-212ENST00000554467 PIAS1O75925 651 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 ITIH2P19823 946 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 SDC4P31431 198 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 VCPP55072 806 aaKnown RBP12.18□□□□□ -0.46
SHMT2-212ENST00000554467 ADIGQ0VDE8 80 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 FASTKD3Q14CZ7 662 aaKnown RBP12.18□□□□□ -0.46
SHMT2-212ENST00000554467 TBC1D25Q3MII6 688 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 RHBDF2Q6PJF5 856 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 POLNQ7Z5Q5 900 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 FAM71DQ8N9W8 422 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 SENP8Q96LD8 212 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 YIPF3Q9GZM5 350 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 ADAM7Q9H2U9 754 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 CTNNAL1Q9UBT7 734 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 HEY1Q9Y5J3 304 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 XPOTO43592 962 aaKnown RBP12.18□□□□□ -0.46
SHMT2-212ENST00000554467 DRD4P21917 467 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 KRT81Q14533 505 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 OASLQ15646 514 aaKnown RBP12.18□□□□□ -0.46
SHMT2-212ENST00000554467 TMEM110Q86TL2 294 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 UNC93AQ86WB7 457 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 UNC45BQ8IWX7 931 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 ALLCQ8N6M5 410 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 CCDC89Q8N998 374 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 ANKRD52Q8NB46 1076 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 MRRFQ96E11 262 aaKnown RBP12.18□□□□□ -0.46
SHMT2-212ENST00000554467 CAPNS2Q96L46 248 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 TRPV6Q9H1D0 765 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 HOMER3Q9NSC5 361 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 GDAP2Q9NXN4 497 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 PDCD11Q14690 1871 aaKnown RBP12.18□□□□□ -0.46
SHMT2-212ENST00000554467 THP07101 528 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 RARGP13631 454 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 YY1P25490 414 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 MAP3K7CLP57077 242 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 PPP2R2AP63151 447 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 BST2Q10589 180 aaKnown RBP12.18□□□□□ -0.46
SHMT2-212ENST00000554467 PIGZQ86VD9 579 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 CACNA2D3Q8IZS8 1091 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 TTC39CQ8N584 583 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 TRAIPQ9BWF2 469 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 IRAK4Q9NWZ3 460 aa12.18□□□□□ -0.46
SHMT2-212ENST00000554467 DDX43Q9NXZ2 648 aaKnown RBP12.18□□□□□ -0.46
SHMT2-212ENST00000554467 CACNA2D1P54289 1103 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 HDAC4P56524 1084 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 SPATA18Q8TC71 538 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 KCNK16Q96T55 309 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 ADAM2Q99965 735 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 GGT7Q9UJ14 662 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 SLC12A4Q9UP95 1085 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 NR2E3Q9Y5X4 410 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.17□□□□□ -0.46
SHMT2-212ENST00000554467 MYBPHLA2RUH7 354 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 BRCC3P46736 316 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 BCAT1P54687 386 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 COPS2P61201 443 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 DPYSL3Q14195 570 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 DSTYKQ6XUX3 929 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 CRYBG2Q8N1P7 616 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 PYROXD2Q8N2H3 581 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 SMC1BQ8NDV3 1235 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 CMASQ8NFW8 434 aaPredicted RBP12.17□□□□□ -0.46
SHMT2-212ENST00000554467 ADAM32Q8TC27 787 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 SNRNP25Q9BV90 132 aaKnown RBP12.17□□□□□ -0.46
SHMT2-212ENST00000554467 MAK16Q9BXY0 300 aaKnown RBP12.17□□□□□ -0.46
SHMT2-212ENST00000554467 UPF3AQ9H1J1 476 aaKnown RBP12.17□□□□□ -0.46
SHMT2-212ENST00000554467 TMEM30AQ9NV96 361 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 TBK1Q9UHD2 729 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 CORO1CQ9ULV4 474 aaPredicted RBP12.17□□□□□ -0.46
SHMT2-212ENST00000554467 A6NHS1 94 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 KPNA6O60684 536 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 DIAPH2O60879 1101 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 PTPN1P18031 435 aaKnown RBP12.17□□□□□ -0.46
SHMT2-212ENST00000554467 PNPLA4P41247 253 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 EIF3EP60228 445 aaKnown RBP12.17□□□□□ -0.46
SHMT2-212ENST00000554467 MGAT3Q09327 533 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 ITGA7Q13683 1181 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 LPIN1Q14693 890 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 SLMAPQ14BN4 828 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 STILQ15468 1287 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 SLC5A9Q2M3M2 681 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 ANKRD22Q5VYY1 191 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 PAQR9Q6ZVX9 377 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 BBS12Q6ZW61 710 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 FAM131BQ86XD5 332 aa12.17□□□□□ -0.46
SHMT2-212ENST00000554467 PRCCQ92733 491 aaPredicted RBP12.17□□□□□ -0.46
SHMT2-212ENST00000554467 RBM15Q96T37 977 aaKnown RBP eCLIP12.17□□□□□ -0.46
SHMT2-212ENST00000554467 CRTAC1Q9NQ79 661 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms