RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 TFR2Q9UP52 801 aa15.17■□□□□ 0.02
SHMT2-210ENST00000553950 COG5Q9UP83 839 aa15.17■□□□□ 0.02
SHMT2-210ENST00000553950 CAPN6Q9Y6Q1 641 aa15.17■□□□□ 0.02
SHMT2-210ENST00000553950 GRID2IPA4D2P6 1211 aa15.16■□□□□ 0.02
SHMT2-210ENST00000553950 SOBPA7XYQ1 873 aa15.16■□□□□ 0.02
SHMT2-210ENST00000553950 MIF4GDA9UHW6 222 aaKnown RBP15.16■□□□□ 0.02
SHMT2-210ENST00000553950 PER2O15055 1255 aa15.16■□□□□ 0.02
SHMT2-210ENST00000553950 SPOPO43791 374 aa15.16■□□□□ 0.02
SHMT2-210ENST00000553950 BUB1BO60566 1050 aaPredicted RBP15.16■□□□□ 0.02
SHMT2-210ENST00000553950 MOCS3O95396 460 aa15.16■□□□□ 0.02
SHMT2-210ENST00000553950 ZDHHC11BP0C7U3 371 aa15.16■□□□□ 0.02
SHMT2-210ENST00000553950 SPATA31D3P0C874 917 aa15.16■□□□□ 0.02
SHMT2-210ENST00000553950 NCAM1P13591 858 aa15.16■□□□□ 0.02
SHMT2-210ENST00000553950 HMGA1P17096 107 aaKnown RBP15.16■□□□□ 0.02
SHMT2-210ENST00000553950 HOXB8P17481 243 aaPredicted RBP15.16■□□□□ 0.02
SHMT2-210ENST00000553950 GBP1P32455 592 aa15.16■□□□□ 0.02
SHMT2-210ENST00000553950 FLT3P36888 993 aa15.16■□□□□ 0.02
SHMT2-210ENST00000553950 KPNA1P52294 538 aaPredicted RBP15.16■□□□□ 0.02
SHMT2-210ENST00000553950 RNASE9P60153 205 aaKnown RBP15.16■□□□□ 0.02
SHMT2-210ENST00000553950 USP46P62068 366 aa15.16■□□□□ 0.02
SHMT2-210ENST00000553950 RPL7AP62424 266 aaKnown RBP15.16■□□□□ 0.02
SHMT2-210ENST00000553950 NNTQ13423 1086 aa15.16■□□□□ 0.02
SHMT2-210ENST00000553950 MESDQ14696 234 aa15.16■□□□□ 0.02
SHMT2-210ENST00000553950 HADHQ16836 314 aaKnown RBP15.16■□□□□ 0.02
SHMT2-210ENST00000553950 SLC25A52Q3SY17 297 aa15.16■□□□□ 0.02
SHMT2-210ENST00000553950 DCAF6Q58WW2 860 aa15.16■□□□□ 0.02
SHMT2-210ENST00000553950 TCEAL5Q5H9L2 206 aa15.16■□□□□ 0.02
SHMT2-210ENST00000553950 LLGL2Q6P1M3 1020 aa15.16■□□□□ 0.02
SHMT2-210ENST00000553950 MSANTD2Q6P1R3 559 aa15.16■□□□□ 0.02
SHMT2-210ENST00000553950 KLHDC10Q6PID8 442 aa15.16■□□□□ 0.02
SHMT2-210ENST00000553950 SPATA31D4Q6ZUB0 917 aa15.16■□□□□ 0.02
SHMT2-210ENST00000553950 PDZD4Q76G19 769 aaPredicted RBP15.16■□□□□ 0.02
SHMT2-210ENST00000553950 SND1Q7KZF4 910 aaKnown RBP eCLIP15.16■□□□□ 0.02
SHMT2-210ENST00000553950 JOSD2Q8TAC2 188 aa15.16■□□□□ 0.02
SHMT2-210ENST00000553950 GPR152Q8TDT2 470 aa15.16■□□□□ 0.02
SHMT2-210ENST00000553950 RXFP2Q8WXD0 754 aa15.16■□□□□ 0.02
SHMT2-210ENST00000553950 MRPS31Q92665 395 aaKnown RBP15.16■□□□□ 0.02
SHMT2-210ENST00000553950 SERPINB11Q96P15 392 aa15.16■□□□□ 0.02
SHMT2-210ENST00000553950 DDX23Q9BUQ8 820 aaKnown RBP15.16■□□□□ 0.02
SHMT2-210ENST00000553950 PRKD2Q9BZL6 878 aa15.16■□□□□ 0.02
SHMT2-210ENST00000553950 TTYH1Q9H313 450 aaPredicted RBP15.16■□□□□ 0.02
SHMT2-210ENST00000553950 SMOC2Q9H3U7 446 aa15.16■□□□□ 0.02
SHMT2-210ENST00000553950 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.16■□□□□ 0.02
SHMT2-210ENST00000553950 DUSP10Q9Y6W6 482 aa15.16■□□□□ 0.02
SHMT2-210ENST00000553950 LAMA3Q16787 3333 aa15.15■□□□□ 0.02
SHMT2-210ENST00000553950 A0A0U1RQJ8 604 aa15.15■□□□□ 0.02
SHMT2-210ENST00000553950 A0A1W2PQH9 124 aa15.15■□□□□ 0.02
SHMT2-210ENST00000553950 RFXAPO00287 272 aa15.15■□□□□ 0.02
SHMT2-210ENST00000553950 ZNF197O14709 1029 aa15.15■□□□□ 0.02
SHMT2-210ENST00000553950 CCL16O15467 120 aa15.15■□□□□ 0.02
SHMT2-210ENST00000553950 ZNF500O60304 480 aaPredicted RBP15.15■□□□□ 0.02
SHMT2-210ENST00000553950 PALMO75781 387 aa15.15■□□□□ 0.02
SHMT2-210ENST00000553950 GRAP2O75791 330 aa15.15■□□□□ 0.02
SHMT2-210ENST00000553950 PTPN2P17706 415 aa15.15■□□□□ 0.02
SHMT2-210ENST00000553950 RDXP35241 583 aaKnown RBP15.15■□□□□ 0.02
SHMT2-210ENST00000553950 PCK1P35558 622 aa15.15■□□□□ 0.02
SHMT2-210ENST00000553950 SULT1E1P49888 294 aa15.15■□□□□ 0.02
SHMT2-210ENST00000553950 EPHA5P54756 1037 aa15.15■□□□□ 0.02
SHMT2-210ENST00000553950 AIF1P55008 147 aa15.15■□□□□ 0.02
SHMT2-210ENST00000553950 GNG11P61952 73 aa15.15■□□□□ 0.02
SHMT2-210ENST00000553950 MTMR3Q13615 1198 aa15.15■□□□□ 0.02
SHMT2-210ENST00000553950 KCNC3Q14003 757 aa15.15■□□□□ 0.02
SHMT2-210ENST00000553950 ARHGAP15Q53QZ3 475 aa15.15■□□□□ 0.02
SHMT2-210ENST00000553950 ZNF569Q5MCW4 686 aa15.15■□□□□ 0.02
SHMT2-210ENST00000553950 NYAP1Q6ZVC0 841 aa15.15■□□□□ 0.02
SHMT2-210ENST00000553950 PEX26Q7Z412 305 aa15.15■□□□□ 0.02
SHMT2-210ENST00000553950 PHLDB2Q86SQ0 1253 aa15.15■□□□□ 0.02
SHMT2-210ENST00000553950 DEFB106AQ8N104 65 aa15.15■□□□□ 0.02
SHMT2-210ENST00000553950 EMC1Q8N766 993 aa15.15■□□□□ 0.02
SHMT2-210ENST00000553950 LRRC57Q8N9N7 239 aa15.15■□□□□ 0.02
SHMT2-210ENST00000553950 ATRIPQ8WXE1 791 aa15.15■□□□□ 0.02
SHMT2-210ENST00000553950 PGAP3Q96FM1 320 aaPredicted RBP15.15■□□□□ 0.02
SHMT2-210ENST00000553950 NACA2Q9H009 215 aa15.15■□□□□ 0.02
SHMT2-210ENST00000553950 FAM204AQ9H8W3 233 aa15.15■□□□□ 0.02
SHMT2-210ENST00000553950 PIDD1Q9HB75 910 aa15.15■□□□□ 0.02
SHMT2-210ENST00000553950 SALL4Q9UJQ4 1053 aa15.15■□□□□ 0.02
SHMT2-210ENST00000553950 AMFRQ9UKV5 643 aa15.15■□□□□ 0.02
SHMT2-210ENST00000553950 JRKLQ9Y4A0 524 aa15.15■□□□□ 0.02
SHMT2-210ENST00000553950 DENND4AQ7Z401 1863 aa15.14■□□□□ 0.01
SHMT2-210ENST00000553950 CHD7Q9P2D1 2997 aa15.14■□□□□ 0.01
SHMT2-210ENST00000553950 CCDC66A2RUB6 948 aa15.14■□□□□ 0.01
SHMT2-210ENST00000553950 PSTPIP1O43586 416 aa15.14■□□□□ 0.01
SHMT2-210ENST00000553950 TLR5O60602 858 aa15.14■□□□□ 0.01
SHMT2-210ENST00000553950 RARGP13631 454 aa15.14■□□□□ 0.01
SHMT2-210ENST00000553950 ETF1P62495 437 aaKnown RBP15.14■□□□□ 0.01
SHMT2-210ENST00000553950 HYAL1Q12794 435 aa15.14■□□□□ 0.01
SHMT2-210ENST00000553950 HECTD3Q5T447 861 aa15.14■□□□□ 0.01
SHMT2-210ENST00000553950 POLNQ7Z5Q5 900 aa15.14■□□□□ 0.01
SHMT2-210ENST00000553950 SLFN11Q7Z7L1 901 aa15.14■□□□□ 0.01
SHMT2-210ENST00000553950 SCD5Q86SK9 330 aa15.14■□□□□ 0.01
SHMT2-210ENST00000553950 TMC8Q8IU68 726 aa15.14■□□□□ 0.01
SHMT2-210ENST00000553950 UBL4BQ8N7F7 174 aa15.14■□□□□ 0.01
SHMT2-210ENST00000553950 SMG7Q92540 1137 aaKnown RBP15.14■□□□□ 0.01
SHMT2-210ENST00000553950 NT5C3BQ969T7 300 aa15.14■□□□□ 0.01
SHMT2-210ENST00000553950 C16orf45Q96MC5 204 aaPredicted RBP15.14■□□□□ 0.01
SHMT2-210ENST00000553950 CFAP57Q96MR6 1250 aa15.14■□□□□ 0.01
SHMT2-210ENST00000553950 NPY6RQ99463 290 aa15.14■□□□□ 0.01
SHMT2-210ENST00000553950 CORO1BQ9BR76 489 aa15.14■□□□□ 0.01
SHMT2-210ENST00000553950 MTPAPQ9NVV4 582 aaKnown RBP eCLIP15.14■□□□□ 0.01
SHMT2-210ENST00000553950 CHORDC1Q9UHD1 332 aaPredicted RBP15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms